Wall clock time and date at job start Sat Apr 11 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47154 * 2 1 4 4 C 1.50704 * 109.47043 * 119.99697 * 2 1 3 5 5 O 1.21281 * 120.00239 * 341.23366 * 4 2 1 6 6 N 1.34776 * 119.99906 * 161.23191 * 4 2 1 7 7 C 1.46853 * 120.38298 * 355.71662 * 6 4 2 8 8 C 1.53347 * 108.81134 * 236.88053 * 7 6 4 9 9 C 1.53186 * 108.77051 * 308.68577 * 8 7 6 10 10 C 1.52835 * 117.65555 * 269.97286 * 9 8 7 11 11 C 1.52813 * 117.71180 * 201.11522 * 9 8 7 12 12 H 1.09004 * 117.52448 * 215.08958 * 11 9 8 13 13 N 1.46500 * 117.50505 * 0.13864 * 11 9 8 14 14 C 1.34781 * 119.99835 * 204.97556 * 13 11 9 15 15 O 1.21278 * 120.00072 * 359.97438 * 14 13 11 16 16 C 1.50699 * 119.99428 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.46699 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99948 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00056 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00340 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00317 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99698 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46908 * 90.00011 * 22 20 18 24 24 H 1.48502 * 109.47054 * 330.00372 * 22 20 18 25 25 H 1.48494 * 109.47336 * 209.99793 * 22 20 18 26 26 C 1.53186 * 115.07452 * 55.44557 * 9 8 7 27 27 C 1.46838 * 120.38406 * 175.69611 * 6 4 2 28 28 H 1.08999 * 109.47002 * 300.00020 * 1 2 3 29 29 H 1.08995 * 109.46695 * 60.00441 * 1 2 3 30 30 H 1.09004 * 109.46765 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47744 * 239.99933 * 2 1 3 32 32 H 1.08998 * 109.46590 * 62.61322 * 3 2 1 33 33 H 1.09002 * 109.46993 * 182.61104 * 3 2 1 34 34 H 1.08994 * 109.46671 * 302.61272 * 3 2 1 35 35 H 1.09001 * 109.57793 * 117.08583 * 7 6 4 36 36 H 1.09001 * 109.57957 * 356.68296 * 7 6 4 37 37 H 1.08999 * 109.58643 * 188.89865 * 8 7 6 38 38 H 1.09003 * 109.70720 * 68.54134 * 8 7 6 39 39 H 1.09010 * 117.50217 * 144.81708 * 10 9 8 40 40 H 1.08996 * 117.53513 * 359.75079 * 10 9 8 41 41 H 0.97001 * 119.99637 * 24.97502 * 13 11 9 42 42 H 1.09002 * 109.47166 * 60.00463 * 16 14 13 43 43 H 1.08993 * 109.47543 * 300.00020 * 16 14 13 44 44 H 0.97002 * 120.00157 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58379 * 64.34511 * 26 9 8 46 46 H 1.08996 * 109.58419 * 184.76894 * 26 9 8 47 47 H 1.08998 * 109.57928 * 242.92526 * 27 6 4 48 48 H 1.09005 * 109.57884 * 3.18423 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2969 -0.8693 2.1817 6 7 3.2989 -1.1691 1.2740 7 6 4.1674 -1.0652 0.0944 8 6 4.6667 -2.4667 -0.2770 9 6 5.2600 -3.1256 0.9721 10 6 6.7494 -2.9176 1.2444 11 6 6.2404 -4.2801 0.7689 12 1 6.2204 -5.0918 1.4962 13 7 6.5463 -4.6734 -0.6087 14 6 6.9624 -5.9274 -0.8749 15 8 7.0840 -6.7301 0.0261 16 6 7.2765 -6.3321 -2.2922 17 16 7.8060 -8.0627 -2.3221 18 6 8.0989 -8.2632 -4.0480 19 1 7.9387 -7.4352 -4.7227 20 6 8.5356 -9.4852 -4.5405 21 7 8.7549 -9.6348 -5.8297 22 14 8.8120 -10.9175 -3.3736 23 1 7.5564 -11.6996 -3.2438 24 1 9.2128 -10.3998 -2.0407 25 1 9.8865 -11.7917 -3.9087 26 6 4.3191 -3.1940 2.1790 27 6 3.8265 -1.7781 2.5015 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8935 -0.5138 -0.8899 32 1 1.7154 1.9426 0.9125 33 1 3.1291 1.4429 -0.0468 34 1 1.6390 1.9696 -0.8656 35 1 5.0180 -0.4229 0.3225 36 1 3.6033 -0.6456 -0.7387 37 1 5.4331 -2.3891 -1.0482 38 1 3.8355 -3.0670 -0.6470 39 1 7.0639 -2.8328 2.2847 40 1 7.3123 -2.3141 0.5325 41 1 6.4494 -4.0313 -1.3293 42 1 8.0756 -5.7013 -2.6815 43 1 6.3863 -6.2134 -2.9097 44 1 9.0605 -10.4888 -6.1738 45 1 3.4676 -3.8322 1.9428 46 1 4.8549 -3.5990 3.0375 47 1 4.6559 -1.1799 2.8788 48 1 3.0388 -1.8256 3.2535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737358564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:58 Heat of formation + Delta-G solvation = -58.560516 kcal Electronic energy + Delta-G solvation = -27060.068413 eV Core-core repulsion = 23241.486557 eV Total energy + Delta-G solvation = -3818.581857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96712 -39.78595 -38.41725 -35.97911 -35.01191 -33.15774 -32.46818 -31.62922 -30.23470 -28.90348 -27.59589 -25.65061 -25.06252 -24.14090 -22.79404 -22.18193 -20.47889 -19.97597 -18.61604 -18.04702 -17.58264 -16.69097 -16.33372 -16.17399 -15.84568 -15.09420 -15.02774 -14.93690 -14.59910 -14.46913 -14.30654 -13.98208 -13.72182 -13.60794 -13.25375 -13.04998 -12.82428 -12.73889 -12.68151 -12.55127 -12.37179 -12.34062 -11.98383 -11.67072 -11.59241 -11.48409 -11.29941 -11.05901 -11.04842 -11.01106 -10.67592 -10.22445 -9.98537 -9.88388 -9.60890 -9.12908 -9.03163 -8.65585 -8.54241 -6.95682 -6.31898 -4.04078 2.26867 2.57448 2.67332 2.78618 3.20344 3.31249 3.48149 3.54242 3.58428 3.98592 4.21156 4.27656 4.30348 4.39339 4.44275 4.53653 4.57482 4.62373 4.68373 4.76870 4.83570 5.02944 5.06258 5.07206 5.13717 5.16556 5.18489 5.23375 5.29229 5.36200 5.39635 5.45485 5.47438 5.50522 5.61120 5.68940 5.69737 5.79449 5.80627 5.84658 5.86382 5.94852 6.13817 6.47816 6.99992 7.49924 7.81910 7.91024 8.38183 8.39877 9.14183 10.77231 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.002005 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.188451 B =13959.723173 C =14588.288201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C -0.142 4.142 4 C 0.519 3.481 5 O -0.542 6.542 6 N -0.609 5.609 7 C 0.109 3.891 8 C -0.099 4.099 9 C -0.135 4.135 10 C -0.183 4.183 11 C 0.101 3.899 12 H 0.137 0.863 13 N -0.708 5.708 14 C 0.535 3.465 15 O -0.516 6.516 16 C -0.124 4.124 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.235 1.235 25 H -0.274 1.274 26 C -0.095 4.095 27 C 0.115 3.885 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.399 0.601 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 24.437 12.508 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 C -0.200 4.200 4 C 0.307 3.693 5 O -0.418 6.418 6 N -0.343 5.343 7 C -0.014 4.014 8 C -0.138 4.138 9 C -0.137 4.137 10 C -0.221 4.221 11 C -0.006 4.006 12 H 0.155 0.845 13 N -0.360 5.360 14 C 0.321 3.679 15 O -0.390 6.390 16 C -0.275 4.275 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.159 1.159 25 H -0.199 1.199 26 C -0.133 4.133 27 C -0.008 4.008 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.234 0.766 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.280 22.862 14.351 29.255 hybrid contribution 0.197 0.486 -1.338 1.437 sum -11.083 23.348 13.013 28.936 Atomic orbital electron populations 1.21643 0.92392 1.02752 1.02433 1.21349 0.98422 0.97466 0.96617 1.21768 1.01294 0.93839 1.03093 1.20750 0.80957 0.78174 0.89392 1.90684 1.55263 1.57576 1.38308 1.48056 1.12389 1.60138 1.13706 1.21799 0.94494 0.97213 0.87870 1.21484 1.01002 0.95628 0.95641 1.21921 0.91327 1.02921 0.97521 1.23622 0.95117 1.00492 1.02894 1.21659 1.00787 0.92035 0.86082 0.84498 1.45408 1.69539 1.13289 1.07770 1.20310 0.75566 0.81019 0.90972 1.90698 1.50505 1.50525 1.47253 1.23276 1.05153 1.03944 0.95113 1.84819 1.86998 1.06501 1.13055 1.22307 1.52508 1.02249 0.89900 0.89368 1.24716 0.93486 0.98134 0.94991 1.69934 1.43940 1.25685 1.12047 0.86735 0.79244 0.82840 0.83026 1.19190 1.15932 1.19913 1.21499 0.98719 0.96857 0.96213 1.21557 0.99253 0.93079 0.86876 0.91577 0.91880 0.92244 0.88755 0.91975 0.92067 0.91175 0.90888 0.89212 0.90486 0.90526 0.88003 0.88388 0.76580 0.88381 0.88430 0.91910 0.90821 0.90168 0.91323 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 8.65 37.16 0.32 -0.59 16 2 C -0.12 -0.74 2.40 -91.77 -0.22 -0.96 16 3 C -0.14 -0.68 9.00 37.16 0.33 -0.35 16 4 C 0.52 4.83 6.86 -10.98 -0.08 4.75 16 5 O -0.54 -7.11 15.41 5.56 0.09 -7.03 16 6 N -0.61 -4.62 2.92 -172.71 -0.50 -5.12 16 7 C 0.11 0.57 5.69 -3.67 -0.02 0.55 16 8 C -0.10 -0.62 5.37 -26.46 -0.14 -0.76 16 9 C -0.14 -1.02 1.94 -154.50 -0.30 -1.32 16 10 C -0.18 -1.37 9.86 -26.80 -0.26 -1.63 16 11 C 0.10 1.05 6.14 -68.01 -0.42 0.63 16 12 H 0.14 1.70 7.40 -51.93 -0.38 1.32 16 13 N -0.71 -8.35 5.35 -53.88 -0.29 -8.63 16 14 C 0.53 9.07 7.85 -10.98 -0.09 8.99 16 15 O -0.52 -10.80 15.43 5.56 0.09 -10.71 16 16 C -0.12 -2.31 6.16 36.00 0.22 -2.09 16 17 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 18 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 19 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 20 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.27 13.97 55.49 0.78 -25.49 16 22 Si 0.86 21.59 27.74 -169.99 -4.72 16.87 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 26 C -0.09 -0.72 5.83 -26.46 -0.15 -0.88 16 27 C 0.11 0.87 6.44 -3.68 -0.02 0.85 16 28 H 0.07 0.52 7.91 -51.93 -0.41 0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.46 6.46 -51.93 -0.34 0.12 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.25 7.25 -51.93 -0.38 -0.13 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.34 5.11 -51.93 -0.27 0.07 16 37 H 0.08 0.39 6.75 -51.93 -0.35 0.04 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.40 3.56 7.12 -40.82 -0.29 3.27 16 42 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.85 6.96 -51.93 -0.36 0.49 16 LS Contribution 395.12 15.07 5.95 5.95 Total: -1.00 -35.46 395.12 -9.06 -44.52 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.85 Total: -0.23 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.61 Total: -4.65 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.02 Total: -39.25 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.72 Total: 16.87 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.46 -9.06 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737358564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.045 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds