Wall clock time and date at job start Sat Apr 11 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47154 * 2 1 4 4 C 1.50704 * 109.47043 * 119.99697 * 2 1 3 5 5 O 1.21281 * 120.00239 * 341.23366 * 4 2 1 6 6 N 1.34776 * 119.99906 * 161.23191 * 4 2 1 7 7 C 1.46853 * 120.38298 * 355.71662 * 6 4 2 8 8 C 1.53347 * 108.81134 * 236.88053 * 7 6 4 9 9 C 1.53186 * 108.77051 * 308.68577 * 8 7 6 10 10 C 1.52835 * 117.65555 * 269.97286 * 9 8 7 11 11 C 1.52813 * 117.71180 * 201.11522 * 9 8 7 12 12 H 1.09004 * 117.52448 * 215.08958 * 11 9 8 13 13 N 1.46500 * 117.50505 * 0.13864 * 11 9 8 14 14 C 1.34781 * 119.99835 * 204.97556 * 13 11 9 15 15 O 1.21278 * 120.00072 * 359.97438 * 14 13 11 16 16 C 1.50699 * 119.99428 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.46699 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99948 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00056 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00340 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00317 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99698 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46908 * 90.00011 * 22 20 18 24 24 H 1.48502 * 109.47054 * 330.00372 * 22 20 18 25 25 H 1.48494 * 109.47336 * 209.99793 * 22 20 18 26 26 C 1.53186 * 115.07452 * 55.44557 * 9 8 7 27 27 C 1.46838 * 120.38406 * 175.69611 * 6 4 2 28 28 H 1.08999 * 109.47002 * 300.00020 * 1 2 3 29 29 H 1.08995 * 109.46695 * 60.00441 * 1 2 3 30 30 H 1.09004 * 109.46765 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47744 * 239.99933 * 2 1 3 32 32 H 1.08998 * 109.46590 * 62.61322 * 3 2 1 33 33 H 1.09002 * 109.46993 * 182.61104 * 3 2 1 34 34 H 1.08994 * 109.46671 * 302.61272 * 3 2 1 35 35 H 1.09001 * 109.57793 * 117.08583 * 7 6 4 36 36 H 1.09001 * 109.57957 * 356.68296 * 7 6 4 37 37 H 1.08999 * 109.58643 * 188.89865 * 8 7 6 38 38 H 1.09003 * 109.70720 * 68.54134 * 8 7 6 39 39 H 1.09010 * 117.50217 * 144.81708 * 10 9 8 40 40 H 1.08996 * 117.53513 * 359.75079 * 10 9 8 41 41 H 0.97001 * 119.99637 * 24.97502 * 13 11 9 42 42 H 1.09002 * 109.47166 * 60.00463 * 16 14 13 43 43 H 1.08993 * 109.47543 * 300.00020 * 16 14 13 44 44 H 0.97002 * 120.00157 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58379 * 64.34511 * 26 9 8 46 46 H 1.08996 * 109.58419 * 184.76894 * 26 9 8 47 47 H 1.08998 * 109.57928 * 242.92526 * 27 6 4 48 48 H 1.09005 * 109.57884 * 3.18423 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2969 -0.8693 2.1817 6 7 3.2989 -1.1691 1.2740 7 6 4.1674 -1.0652 0.0944 8 6 4.6667 -2.4667 -0.2770 9 6 5.2600 -3.1256 0.9721 10 6 6.7494 -2.9176 1.2444 11 6 6.2404 -4.2801 0.7689 12 1 6.2204 -5.0918 1.4962 13 7 6.5463 -4.6734 -0.6087 14 6 6.9624 -5.9274 -0.8749 15 8 7.0840 -6.7301 0.0261 16 6 7.2765 -6.3321 -2.2922 17 16 7.8060 -8.0627 -2.3221 18 6 8.0989 -8.2632 -4.0480 19 1 7.9387 -7.4352 -4.7227 20 6 8.5356 -9.4852 -4.5405 21 7 8.7549 -9.6348 -5.8297 22 14 8.8120 -10.9175 -3.3736 23 1 7.5564 -11.6996 -3.2438 24 1 9.2128 -10.3998 -2.0407 25 1 9.8865 -11.7917 -3.9087 26 6 4.3191 -3.1940 2.1790 27 6 3.8265 -1.7781 2.5015 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8935 -0.5138 -0.8899 32 1 1.7154 1.9426 0.9125 33 1 3.1291 1.4429 -0.0468 34 1 1.6390 1.9696 -0.8656 35 1 5.0180 -0.4229 0.3225 36 1 3.6033 -0.6456 -0.7387 37 1 5.4331 -2.3891 -1.0482 38 1 3.8355 -3.0670 -0.6470 39 1 7.0639 -2.8328 2.2847 40 1 7.3123 -2.3141 0.5325 41 1 6.4494 -4.0313 -1.3293 42 1 8.0756 -5.7013 -2.6815 43 1 6.3863 -6.2134 -2.9097 44 1 9.0605 -10.4888 -6.1738 45 1 3.4676 -3.8322 1.9428 46 1 4.8549 -3.5990 3.0375 47 1 4.6559 -1.1799 2.8788 48 1 3.0388 -1.8256 3.2535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737358564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:58 Heat of formation + Delta-G solvation = -82.114854 kcal Electronic energy + Delta-G solvation = -27061.089806 eV Core-core repulsion = 23241.486557 eV Total energy + Delta-G solvation = -3819.603249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65078 -40.79447 -39.40955 -36.76102 -35.56660 -34.67415 -34.22487 -32.20727 -31.19123 -30.03081 -28.03629 -27.85078 -25.66938 -24.67383 -23.45974 -23.03204 -21.63211 -20.59517 -19.92052 -19.19208 -18.39942 -17.97210 -17.26862 -17.03649 -16.94675 -16.46031 -16.42134 -16.02063 -15.45218 -15.12906 -15.09061 -14.98410 -14.86483 -14.79469 -14.27587 -14.07246 -13.84004 -13.62308 -13.35372 -13.28030 -13.14526 -13.05401 -13.00770 -12.88596 -12.76787 -12.65240 -12.21699 -12.09933 -11.98732 -11.88670 -11.83968 -11.62060 -11.17268 -11.11709 -10.83774 -10.66219 -10.53171 -9.90075 -9.46935 -8.99423 -8.51527 -6.22114 0.98054 1.31193 1.46250 1.49134 1.54690 1.60282 2.01046 2.15202 2.25029 2.71079 2.81523 2.86853 3.43677 3.60524 3.67218 3.78311 3.82288 3.90725 3.94537 4.06808 4.09651 4.23977 4.27497 4.32215 4.46085 4.49547 4.57301 4.58899 4.71399 4.75839 4.79044 4.85474 4.87681 4.90585 4.94751 4.97171 5.00178 5.06327 5.23550 5.26393 5.30481 5.31629 5.49571 5.56629 5.70955 6.11818 6.40027 6.43867 6.93924 7.16271 7.18070 8.60623 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.002005 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.188451 B =13959.723173 C =14588.288201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C -0.138 4.138 4 C 0.510 3.490 5 O -0.591 6.591 6 N -0.608 5.608 7 C 0.108 3.892 8 C -0.101 4.101 9 C -0.117 4.117 10 C -0.156 4.156 11 C 0.066 3.934 12 H 0.111 0.889 13 N -0.681 5.681 14 C 0.538 3.462 15 O -0.563 6.563 16 C -0.110 4.110 17 S -0.178 6.178 18 C -0.527 4.527 19 H 0.065 0.935 20 C 0.045 3.955 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.264 1.264 24 H -0.237 1.237 25 H -0.259 1.259 26 C -0.092 4.092 27 C 0.116 3.884 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.416 0.584 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.277 0.723 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.566 26.780 12.299 31.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.196 4.196 4 C 0.300 3.700 5 O -0.472 6.472 6 N -0.340 5.340 7 C -0.014 4.014 8 C -0.139 4.139 9 C -0.119 4.119 10 C -0.195 4.195 11 C -0.040 4.040 12 H 0.129 0.871 13 N -0.333 5.333 14 C 0.324 3.676 15 O -0.441 6.441 16 C -0.261 4.261 17 S 0.048 5.952 18 C -0.674 4.674 19 H 0.083 0.917 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.161 1.161 25 H -0.184 1.184 26 C -0.131 4.131 27 C -0.006 4.006 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.255 0.745 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.673 25.267 14.113 30.846 hybrid contribution -0.058 -0.086 -1.238 1.242 sum -10.731 25.181 12.875 30.249 Atomic orbital electron populations 1.21648 0.93142 1.01825 1.02636 1.21416 0.97846 0.98441 0.95789 1.21767 1.02174 0.92452 1.03162 1.21378 0.81053 0.77885 0.89721 1.90661 1.56660 1.59631 1.40254 1.48189 1.12255 1.59147 1.14368 1.22028 0.95007 0.96858 0.87488 1.21558 1.01172 0.95940 0.95244 1.21924 0.91570 1.00481 0.97929 1.23708 0.94710 0.97200 1.03854 1.21719 1.04792 0.92895 0.84635 0.87108 1.45077 1.67362 1.11652 1.09222 1.19970 0.75790 0.82262 0.89547 1.90689 1.53119 1.52235 1.48088 1.23257 1.06374 0.99388 0.97072 1.84778 1.87609 1.12492 1.10317 1.22451 1.51860 1.01620 0.91513 0.91719 1.25548 0.93433 1.00639 0.96402 1.70008 1.45077 1.26728 1.13566 0.85886 0.79580 0.80001 0.81022 1.18845 1.16113 1.18377 1.21463 0.98162 0.96677 0.96776 1.21513 0.99084 0.93218 0.86808 0.93393 0.89594 0.93765 0.86530 0.93497 0.90687 0.89366 0.88819 0.87143 0.88419 0.91668 0.86983 0.86518 0.74522 0.86488 0.86716 0.91386 0.92857 0.89550 0.89429 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.65 71.98 0.62 -1.11 16 2 C -0.11 -1.22 2.40 -11.54 -0.03 -1.24 16 3 C -0.14 -0.94 9.00 71.98 0.65 -0.29 16 4 C 0.51 9.05 6.86 87.66 0.60 9.65 16 5 O -0.59 -16.07 15.41 -3.03 -0.05 -16.12 16 6 N -0.61 -8.01 2.92 -818.71 -2.39 -10.40 16 7 C 0.11 0.70 5.69 86.43 0.49 1.19 16 8 C -0.10 -0.90 5.37 30.77 0.17 -0.73 16 9 C -0.12 -1.48 1.94 -52.17 -0.10 -1.58 16 10 C -0.16 -1.78 9.86 30.55 0.30 -1.48 16 11 C 0.07 1.24 6.14 44.94 0.28 1.52 16 12 H 0.11 2.76 7.40 -2.39 -0.02 2.74 16 13 N -0.68 -14.44 5.35 -442.78 -2.37 -16.81 16 14 C 0.54 17.57 7.85 87.66 0.69 18.26 16 15 O -0.56 -23.56 15.43 -3.02 -0.05 -23.61 16 16 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 17 S -0.18 -8.85 18.55 -56.49 -1.05 -9.90 16 18 C -0.53 -30.11 10.04 67.96 0.68 -29.42 16 19 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 20 C 0.05 2.63 5.50 84.86 0.47 3.09 16 21 N -0.92 -55.11 13.97 21.65 0.30 -54.81 16 22 Si 0.91 44.67 27.74 68.60 1.90 46.57 16 23 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 26 C -0.09 -1.32 5.83 30.77 0.18 -1.14 16 27 C 0.12 1.63 6.44 86.43 0.56 2.19 16 28 H 0.05 0.78 7.91 -2.39 -0.02 0.76 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.68 8.14 -2.38 -0.02 0.67 16 31 H 0.12 0.72 6.46 -2.39 -0.02 0.70 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.31 7.25 -2.39 -0.02 0.29 16 34 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.11 0.30 5.11 -2.39 -0.01 0.29 16 37 H 0.10 0.50 6.75 -2.39 -0.02 0.49 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.42 5.89 7.12 -92.71 -0.66 5.23 16 42 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 44 H 0.28 15.42 8.31 -92.71 -0.77 14.64 16 45 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 1.36 6.96 -2.38 -0.02 1.34 16 Total: -1.00 -80.36 395.12 2.56 -77.80 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.26 Total: 11.86 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.99 Total: -4.58 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -4.46 Total: -82.03 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.09 Total: -39.73 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -80.36 2.56 -77.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737358564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.317 kcal (2) G-P(sol) polarization free energy of solvation -80.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds