Wall clock time and date at job start Sat Apr 11 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50695 * 120.00287 * 2 1 4 4 C 1.32994 * 119.99828 * 180.02562 * 2 1 3 5 5 C 1.47106 * 120.00221 * 352.13574 * 4 2 1 6 6 O 1.21612 * 119.99346 * 353.28989 * 5 4 2 7 7 N 1.34770 * 120.00185 * 173.29558 * 5 4 2 8 8 C 1.46924 * 120.62901 * 354.41236 * 7 5 4 9 9 C 1.53190 * 108.77718 * 233.60966 * 8 7 5 10 10 C 1.53038 * 109.31319 * 305.36777 * 9 8 7 11 11 C 1.53042 * 109.54014 * 61.36442 * 10 9 8 12 12 H 1.09007 * 109.49951 * 58.61535 * 11 10 9 13 13 N 1.46499 * 109.50021 * 178.68104 * 11 10 9 14 14 C 1.46498 * 119.99606 * 60.00211 * 13 11 10 15 15 C 1.34770 * 120.00113 * 239.99663 * 13 11 10 16 16 O 1.21284 * 120.00270 * 0.02562 * 15 13 11 17 17 C 1.50704 * 119.99975 * 179.97438 * 15 13 11 18 18 S 1.81000 * 109.47226 * 180.02562 * 17 15 13 19 19 C 1.76198 * 100.00129 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99718 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99826 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00318 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99693 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47158 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46846 * 120.00072 * 23 21 19 26 26 H 1.48496 * 109.47286 * 240.00356 * 23 21 19 27 27 C 1.46925 * 120.62992 * 174.41907 * 7 5 4 28 28 H 1.09005 * 109.47361 * 263.67769 * 1 2 3 29 29 H 1.09004 * 109.47206 * 23.67407 * 1 2 3 30 30 H 1.09000 * 109.47668 * 143.67511 * 1 2 3 31 31 H 1.08997 * 109.47261 * 240.00790 * 3 2 1 32 32 H 1.09008 * 109.47231 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47357 * 120.00203 * 3 2 1 34 34 H 1.08000 * 119.99978 * 172.12391 * 4 2 1 35 35 H 1.09002 * 109.58527 * 113.82688 * 8 7 5 36 36 H 1.08994 * 109.58947 * 353.40115 * 8 7 5 37 37 H 1.09001 * 109.49613 * 65.31929 * 9 8 7 38 38 H 1.09002 * 109.50182 * 185.41366 * 9 8 7 39 39 H 1.09001 * 109.46021 * 181.38190 * 10 9 8 40 40 H 1.08999 * 109.46191 * 301.34024 * 10 9 8 41 41 H 1.09003 * 109.47194 * 89.99917 * 14 13 11 42 42 H 1.09002 * 109.47126 * 209.99676 * 14 13 11 43 43 H 1.09001 * 109.47223 * 329.99449 * 14 13 11 44 44 H 1.08994 * 109.47348 * 300.00445 * 17 15 13 45 45 H 1.09003 * 109.46469 * 60.00866 * 17 15 13 46 46 H 0.96993 * 120.00257 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.58708 * 6.59938 * 27 7 5 48 48 H 1.09000 * 109.70307 * 246.24375 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4468 -2.4199 0.1732 6 8 0.2600 -2.4101 0.4387 7 7 2.0976 -3.5923 0.0383 8 6 3.4992 -3.6241 -0.4012 9 6 3.6164 -4.5600 -1.6082 10 6 3.0406 -5.9304 -1.2440 11 6 1.5593 -5.7849 -0.8876 12 1 1.0219 -5.3567 -1.7338 13 7 1.0013 -7.1016 -0.5696 14 6 1.5560 -7.8842 0.5377 15 6 -0.0225 -7.5928 -1.2955 16 8 -0.4815 -6.9450 -2.2124 17 6 -0.5962 -8.9475 -0.9687 18 16 -1.9471 -9.3227 -2.1133 19 6 -2.4187 -10.9131 -1.5192 20 1 -1.8987 -11.3523 -0.6806 21 6 -3.4591 -11.6010 -2.1283 22 7 -4.0931 -11.0655 -3.1500 23 14 -3.9586 -13.2874 -1.4989 24 1 -3.0957 -13.6625 -0.3499 25 1 -5.3771 -13.2521 -1.0612 26 1 -3.8003 -14.2879 -2.5847 27 6 1.4188 -4.8628 0.3276 28 1 -0.3634 -0.1132 1.0214 29 1 -0.3634 0.9412 -0.4127 30 1 -0.3634 -0.8279 -0.6087 31 1 2.8871 1.3628 -0.8900 32 1 1.5522 2.1336 0.0005 33 1 2.8872 1.3628 0.8900 34 1 3.2443 -1.1562 -0.1287 35 1 4.1279 -3.9927 0.4094 36 1 3.8161 -2.6206 -0.6848 37 1 3.0597 -4.1429 -2.4474 38 1 4.6652 -4.6679 -1.8846 39 1 3.1450 -6.6056 -2.0933 40 1 3.5816 -6.3361 -0.3891 41 1 1.0252 -7.6391 1.4576 42 1 1.4418 -8.9470 0.3244 43 1 2.6139 -7.6488 0.6548 44 1 0.1821 -9.7045 -1.0650 45 1 -0.9756 -8.9443 0.0532 46 1 -4.8199 -11.5464 -3.5759 47 1 0.3632 -4.6765 0.5249 48 1 1.8757 -5.3336 1.1982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737629056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:18 Heat of formation + Delta-G solvation = -75.584717 kcal Electronic energy + Delta-G solvation = -27392.420180 eV Core-core repulsion = 23573.100098 eV Total energy + Delta-G solvation = -3819.320081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66184 -40.73301 -38.73232 -36.50103 -36.27677 -34.60656 -33.63646 -32.24286 -30.27134 -28.90973 -28.64555 -27.80962 -27.65088 -26.25366 -24.21531 -22.54328 -20.99268 -20.39780 -19.62158 -18.96797 -18.46740 -18.11094 -17.17864 -16.96774 -16.89948 -16.45899 -16.22702 -15.91327 -15.48592 -15.31959 -14.86557 -14.79796 -14.72676 -14.51833 -14.46359 -14.03401 -13.92747 -13.78561 -13.56170 -13.30215 -13.23822 -13.21130 -13.15682 -12.92955 -12.79500 -12.61010 -12.49348 -12.37778 -11.98562 -11.84600 -11.74597 -11.69295 -11.17785 -10.96246 -10.62025 -10.29017 -10.18166 -9.91348 -9.43293 -8.70859 -8.36495 -6.15709 0.37767 1.21078 1.40449 1.41882 1.49995 1.55399 1.82938 2.24142 2.25264 2.27079 2.97614 3.23131 3.52752 3.55965 3.80715 3.83731 3.85511 3.96854 3.99858 4.15475 4.17076 4.20433 4.28675 4.42358 4.50643 4.54459 4.56282 4.65267 4.67583 4.70485 4.71510 4.82849 4.84608 4.90133 4.92960 5.01201 5.08267 5.14578 5.18345 5.27853 5.38090 5.39914 5.50256 5.57564 5.67893 6.17730 6.20312 6.42979 7.04341 7.08167 7.18118 8.73214 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002197 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.654231 B =12740.066672 C =13508.710483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.027 4.027 3 C -0.122 4.122 4 C -0.247 4.247 5 C 0.531 3.469 6 O -0.588 6.588 7 N -0.609 5.609 8 C 0.102 3.898 9 C -0.128 4.128 10 C -0.121 4.121 11 C 0.130 3.870 12 H 0.057 0.943 13 N -0.605 5.605 14 C 0.065 3.935 15 C 0.529 3.471 16 O -0.570 6.570 17 C -0.120 4.120 18 S -0.159 6.159 19 C -0.543 4.543 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.254 1.254 25 H -0.275 1.275 26 H -0.273 1.273 27 C 0.114 3.886 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.166 0.834 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.115 0.885 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.271 0.729 47 H 0.053 0.947 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.365 19.718 11.274 34.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.029 4.029 3 C -0.178 4.178 4 C -0.267 4.267 5 C 0.325 3.675 6 O -0.471 6.471 7 N -0.341 5.341 8 C -0.018 4.018 9 C -0.167 4.167 10 C -0.159 4.159 11 C 0.025 3.975 12 H 0.075 0.925 13 N -0.338 5.338 14 C -0.076 4.076 15 C 0.317 3.683 16 O -0.449 6.449 17 C -0.271 4.271 18 S 0.068 5.932 19 C -0.691 4.691 20 H 0.103 0.897 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.178 1.178 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.010 4.010 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.183 0.817 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.068 0.932 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 23.987 20.647 9.963 33.180 hybrid contribution -0.769 -1.912 0.838 2.224 sum 23.218 18.735 10.801 31.730 Atomic orbital electron populations 1.21108 0.92775 1.02004 1.02378 1.22911 0.95985 0.96243 0.87751 1.21072 1.00446 0.92009 1.04315 1.22509 1.01721 0.90036 1.12471 1.19345 0.86239 0.85585 0.76326 1.90778 1.17468 1.87900 1.50966 1.48059 1.14291 1.04683 1.67105 1.22180 0.79701 1.02579 0.97373 1.21927 1.03274 0.93767 0.97725 1.21879 0.92242 0.98841 1.02967 1.21359 0.96252 0.82362 0.97531 0.92466 1.47820 1.33496 1.18713 1.33790 1.22169 1.01091 0.96367 0.87974 1.20275 0.79427 0.87161 0.81424 1.90680 1.61018 1.61167 1.31986 1.23353 1.02215 0.96938 1.04560 1.85672 1.39555 1.24024 1.43954 1.23221 1.22137 1.03183 1.20547 0.89718 1.26190 0.95035 1.03443 0.94723 1.70201 1.22335 1.40039 1.22336 0.84861 0.78215 0.76024 0.78557 1.17790 1.20033 1.19803 1.21662 0.98203 0.83924 0.97214 0.91536 0.90562 0.92856 0.88846 0.90514 0.88895 0.81695 0.88245 0.87005 0.93240 0.86654 0.92143 0.88190 0.91327 0.90150 0.87381 0.86867 0.87527 0.91996 0.92853 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.41 71.23 0.60 -2.04 16 2 C -0.03 -0.42 6.10 -17.62 -0.11 -0.52 16 3 C -0.12 -0.85 10.06 71.23 0.72 -0.13 16 4 C -0.25 -3.96 8.86 23.43 0.21 -3.75 16 5 C 0.53 13.21 7.47 86.57 0.65 13.85 16 6 O -0.59 -20.35 12.74 -4.07 -0.05 -20.40 16 7 N -0.61 -12.24 2.97 -823.20 -2.45 -14.68 16 8 C 0.10 1.01 6.30 86.36 0.54 1.55 16 9 C -0.13 -1.50 6.08 30.67 0.19 -1.31 16 10 C -0.12 -1.98 5.12 30.62 0.16 -1.82 16 11 C 0.13 3.35 2.67 45.07 0.12 3.47 16 12 H 0.06 2.05 6.90 -2.38 -0.02 2.04 16 13 N -0.60 -17.15 2.76 -822.14 -2.27 -19.42 16 14 C 0.07 1.16 9.20 127.77 1.18 2.33 16 15 C 0.53 21.47 7.69 87.66 0.67 22.14 16 16 O -0.57 -29.10 15.19 -3.04 -0.05 -29.14 16 17 C -0.12 -5.00 4.71 71.24 0.34 -4.67 16 18 S -0.16 -9.22 20.57 -56.49 -1.16 -10.38 16 19 C -0.54 -31.69 9.50 67.95 0.65 -31.05 16 20 H 0.08 4.56 7.80 -2.91 -0.02 4.54 16 21 C 0.01 0.61 5.49 84.86 0.47 1.08 16 22 N -0.91 -57.38 13.22 21.65 0.29 -57.10 16 23 Si 1.00 44.33 29.55 68.60 2.03 46.35 16 24 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 C 0.11 2.71 5.80 86.36 0.50 3.21 16 28 H 0.07 1.54 7.98 -2.38 -0.02 1.52 16 29 H 0.08 1.21 7.93 -2.38 -0.02 1.19 16 30 H 0.05 1.51 6.27 -2.39 -0.01 1.49 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.47 7.86 -2.38 -0.02 0.45 16 33 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.17 1.28 6.11 -2.91 -0.02 1.26 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.11 0.62 5.46 -2.39 -0.01 0.60 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.02 6.72 -2.39 -0.02 1.01 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.43 6.44 -2.39 -0.02 1.41 16 43 H 0.11 1.12 6.45 -2.39 -0.02 1.10 16 44 H 0.11 4.18 7.40 -2.40 -0.02 4.16 16 45 H 0.11 4.08 8.11 -2.39 -0.02 4.06 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.05 1.74 7.00 -2.39 -0.02 1.73 16 48 H 0.10 1.72 7.51 -2.39 -0.02 1.70 16 Total: -1.00 -90.28 393.06 4.16 -86.13 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.95 Total: 16.30 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.87 Total: 2.35 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -4.43 Total: -91.20 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.10 Total: -49.55 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.16 Total: -10.38 kcal Total: -90.28 4.16 -86.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737629056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.543 kcal (2) G-P(sol) polarization free energy of solvation -90.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds