Wall clock time and date at job start Sat Apr 11 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46814 * 2 1 4 4 C 1.53001 * 109.46936 * 119.99636 * 2 1 3 5 5 H 1.08999 * 109.46888 * 185.00786 * 4 2 1 6 6 C 1.53003 * 109.47014 * 305.00032 * 4 2 1 7 7 N 1.46499 * 109.46708 * 174.99880 * 6 4 2 8 8 C 1.34784 * 119.99893 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99649 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99774 * 179.72962 * 8 7 6 11 11 S 1.81008 * 109.46759 * 180.02562 * 10 8 7 12 12 C 1.76198 * 99.99946 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99996 * 359.97438 * 12 11 10 14 14 C 1.38798 * 120.00252 * 179.97438 * 12 11 10 15 15 N 1.31626 * 120.00327 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99735 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47351 * 90.00094 * 16 14 12 18 18 H 1.48496 * 109.47299 * 210.00069 * 16 14 12 19 19 H 1.48507 * 109.47281 * 330.00181 * 16 14 12 20 20 N 1.46491 * 109.46969 * 65.00637 * 4 2 1 21 21 C 1.34776 * 120.00153 * 84.99920 * 20 4 2 22 22 O 1.21612 * 120.00101 * 359.97438 * 21 20 4 23 23 C 1.47103 * 119.99813 * 179.97438 * 21 20 4 24 24 C 1.32618 * 124.62137 * 179.69763 * 23 21 20 25 25 C 1.51109 * 110.76186 * 179.84625 * 24 23 21 26 26 C 1.54584 * 104.89917 * 343.80651 * 25 24 23 27 27 C 1.51118 * 124.62384 * 0.02562 * 23 21 20 28 28 H 1.08997 * 109.47849 * 300.00273 * 1 2 3 29 29 H 1.09001 * 109.47047 * 60.00705 * 1 2 3 30 30 H 1.09005 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47615 * 240.00217 * 2 1 3 32 32 H 1.08997 * 109.47135 * 59.99290 * 3 2 1 33 33 H 1.09001 * 109.46806 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46737 * 299.99485 * 3 2 1 35 35 H 1.08998 * 109.46692 * 55.00382 * 6 4 2 36 36 H 1.08994 * 109.47584 * 295.00246 * 6 4 2 37 37 H 0.97005 * 120.00261 * 0.02562 * 7 6 4 38 38 H 1.09001 * 109.46809 * 299.99238 * 10 8 7 39 39 H 1.08993 * 109.47525 * 59.99679 * 10 8 7 40 40 H 0.97000 * 120.00223 * 180.02562 * 15 14 12 41 41 H 0.97006 * 119.99804 * 264.99213 * 20 4 2 42 42 H 1.08001 * 124.61474 * 0.02562 * 24 23 21 43 43 H 1.08994 * 110.52352 * 224.85272 * 25 24 23 44 44 H 1.09004 * 110.24672 * 102.61342 * 25 24 23 45 45 H 1.08995 * 110.98194 * 266.70604 * 26 25 24 46 46 H 1.09002 * 110.97826 * 142.91129 * 26 25 24 47 47 H 1.09005 * 110.36209 * 315.43884 * 27 23 21 48 48 H 1.08996 * 110.36536 * 77.64206 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1262 -0.6441 1.2953 6 6 1.4298 -0.0761 2.4953 7 7 1.8225 -0.8395 3.6824 8 6 1.3985 -0.4539 4.9023 9 8 0.6914 0.5247 5.0172 10 6 1.7975 -1.2428 6.1228 11 16 1.0757 -0.4796 7.5969 12 6 1.6850 -1.5731 8.8369 13 1 2.3070 -2.4112 8.5596 14 6 1.3654 -1.3573 10.1703 15 7 1.8209 -2.1739 11.0967 16 14 0.2889 0.0919 10.6500 17 1 -1.1368 -0.3235 10.6332 18 1 0.6548 0.5502 12.0142 19 1 0.4926 1.2011 9.6839 20 7 1.6525 -2.1327 1.1906 21 6 2.4223 -3.0157 0.5242 22 8 3.4385 -2.6406 -0.0287 23 6 2.0335 -4.4332 0.4658 24 6 2.7177 -5.3768 -0.1669 25 6 2.0389 -6.7190 -0.0221 26 6 1.0437 -6.5371 1.1467 27 6 0.7963 -5.0115 1.1127 28 1 -0.3635 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6765 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 0.3433 -0.0735 2.4080 36 1 1.7894 0.9488 2.5870 37 1 2.3878 -1.6225 3.5905 38 1 1.4338 -2.2660 6.0288 39 1 2.8837 -1.2499 6.2117 40 1 1.5973 -2.0233 12.0285 41 1 0.8418 -2.4319 1.6315 42 1 3.6365 -5.2091 -0.7092 43 1 2.7686 -7.4923 0.2179 44 1 1.5056 -6.9728 -0.9382 45 1 1.4933 -6.8389 2.0926 46 1 0.1204 -7.0863 0.9622 47 1 0.6807 -4.6234 2.1247 48 1 -0.0864 -4.7817 0.5160 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738310039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:08 Heat of formation + Delta-G solvation = -77.477216 kcal Electronic energy + Delta-G solvation = -27231.801852 eV Core-core repulsion = 23412.399705 eV Total energy + Delta-G solvation = -3819.402146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.66760 -39.39189 -38.36539 -37.19904 -34.19174 -33.56010 -32.45611 -30.28534 -29.71691 -28.83950 -27.58117 -27.38034 -25.63231 -24.14745 -22.58456 -21.23388 -20.56999 -19.68576 -19.24196 -17.90357 -17.51120 -16.78970 -16.56101 -16.14652 -15.93239 -15.27750 -15.09674 -15.01556 -14.67160 -14.56355 -14.09398 -13.72490 -13.51150 -13.39177 -13.23177 -13.16053 -12.90413 -12.80582 -12.36577 -12.35490 -12.18414 -12.06565 -11.79790 -11.67873 -11.57839 -11.54968 -11.30024 -11.28263 -11.02560 -10.81943 -10.62048 -10.18886 -9.87957 -9.61149 -9.44826 -9.23800 -9.05990 -9.00074 -8.52522 -6.93974 -6.30529 -4.02533 1.03686 2.70199 2.84030 2.93473 2.98982 3.28444 3.32292 3.48933 3.62799 4.08259 4.14838 4.29687 4.31504 4.53230 4.59440 4.64957 4.69992 4.73351 4.83178 4.86979 5.02451 5.08575 5.21224 5.23263 5.25433 5.30568 5.37308 5.38733 5.39988 5.47630 5.58168 5.59429 5.62146 5.68678 5.73580 5.77574 5.80882 5.90162 5.93497 5.98610 6.02888 6.15977 6.19823 6.44567 7.19116 7.53096 7.92427 7.92508 8.40065 8.42762 9.15564 10.78743 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010637 B = 0.002736 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.750660 B =10232.120219 C =12233.624353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 C -0.150 4.150 4 C 0.139 3.861 5 H 0.097 0.903 6 C 0.109 3.891 7 N -0.737 5.737 8 C 0.531 3.469 9 O -0.518 6.518 10 C -0.124 4.124 11 S -0.141 6.141 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 N -0.720 5.720 21 C 0.569 3.431 22 O -0.541 6.541 23 C -0.197 4.197 24 C -0.070 4.070 25 C -0.109 4.109 26 C -0.123 4.123 27 C -0.092 4.092 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.400 0.600 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.403 0.597 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 -4.960 -26.910 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 C -0.208 4.208 4 C 0.034 3.966 5 H 0.115 0.885 6 C -0.016 4.016 7 N -0.392 5.392 8 C 0.317 3.683 9 O -0.392 6.392 10 C -0.275 4.275 11 S 0.086 5.914 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 N -0.372 5.372 21 C 0.357 3.643 22 O -0.419 6.419 23 C -0.200 4.200 24 C -0.089 4.089 25 C -0.146 4.146 26 C -0.161 4.161 27 C -0.130 4.130 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.239 0.761 42 H 0.155 0.845 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.016 -3.078 -26.896 27.146 hybrid contribution 0.343 -1.204 0.466 1.335 sum -1.673 -4.281 -26.430 26.827 Atomic orbital electron populations 1.21945 0.94809 1.01893 1.02373 1.21426 0.96363 0.96613 0.97748 1.21884 1.01411 0.95094 1.02433 1.21308 1.01056 0.79985 0.94249 0.88509 1.21766 1.00687 0.96298 0.82824 1.45976 1.54859 1.32475 1.05933 1.20287 0.79443 0.84834 0.83731 1.90705 1.36115 1.26559 1.85859 1.23278 1.05144 1.02817 0.96271 1.84779 1.68584 1.40672 0.97396 1.22315 1.37573 1.14526 0.92518 0.89402 1.24713 0.95051 0.96294 0.95248 1.69937 1.43809 1.36753 1.01187 0.86735 0.81386 0.84084 0.79632 1.19211 1.19940 1.15910 1.45983 1.27789 1.08143 1.55244 1.17991 0.82925 0.85259 0.78082 1.90802 1.25481 1.80027 1.45605 1.21824 0.99945 0.93025 1.05243 1.24074 0.97260 0.94120 0.93468 1.21500 0.98275 0.95351 0.99428 1.22432 0.99502 0.95340 0.98825 1.21260 0.95437 0.95463 1.00790 0.91797 0.92456 0.92693 0.90277 0.91945 0.92272 0.92221 0.90375 0.89762 0.76595 0.88536 0.88482 0.91924 0.76134 0.84488 0.90063 0.89668 0.90503 0.90421 0.90589 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.60 37.16 0.32 -0.79 16 2 C -0.10 -0.82 2.87 -90.62 -0.26 -1.08 16 3 C -0.15 -1.14 8.95 37.16 0.33 -0.81 16 4 C 0.14 1.23 1.90 -67.93 -0.13 1.10 16 5 H 0.10 1.00 7.58 -51.93 -0.39 0.61 16 6 C 0.11 1.11 4.53 -4.04 -0.02 1.09 16 7 N -0.74 -8.88 5.39 -60.30 -0.32 -9.20 16 8 C 0.53 9.02 7.85 -10.98 -0.09 8.93 16 9 O -0.52 -10.69 15.86 5.56 0.09 -10.61 16 10 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 11 S -0.14 -3.51 18.55 -107.50 -1.99 -5.51 16 12 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 13 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 14 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 15 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 16 Si 0.86 21.62 27.74 -169.99 -4.71 16.91 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 20 N -0.72 -5.99 3.96 -54.99 -0.22 -6.21 16 21 C 0.57 5.85 7.76 -12.66 -0.10 5.76 16 22 O -0.54 -7.43 16.43 5.27 0.09 -7.35 16 23 C -0.20 -1.66 6.09 -102.72 -0.63 -2.29 16 24 C -0.07 -0.54 10.43 -36.01 -0.38 -0.91 16 25 C -0.11 -0.60 6.80 -26.85 -0.18 -0.78 16 26 C -0.12 -0.70 7.17 -25.07 -0.18 -0.88 16 27 C -0.09 -0.59 6.02 -26.85 -0.16 -0.75 16 28 H 0.06 0.49 6.23 -51.93 -0.32 0.16 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 7.75 -51.93 -0.40 -0.02 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.48 6.68 -51.93 -0.35 0.13 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.81 6.06 -51.93 -0.31 0.49 16 36 H 0.08 0.92 6.81 -51.93 -0.35 0.57 16 37 H 0.40 4.13 8.14 -40.82 -0.33 3.79 16 38 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 39 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.40 2.84 7.61 -40.82 -0.31 2.53 16 42 H 0.14 1.08 8.03 -52.49 -0.42 0.66 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.48 7.83 -51.93 -0.41 0.07 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -34.78 402.14 -9.10 -43.88 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.83 Total: 3.14 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.03 Total: -5.45 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.23 Total: -41.08 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.78 -9.10 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738310039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.596 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds