Wall clock time and date at job start Sat Apr 11 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.50696 * 109.47242 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99909 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00395 * 180.02562 * 4 3 2 7 7 C 1.47431 * 126.05110 * 359.69049 * 6 4 3 8 8 C 1.54487 * 107.15629 * 181.45094 * 7 6 4 9 9 C 1.56019 * 102.52458 * 23.21676 * 8 7 6 10 10 H 1.08996 * 112.90064 * 202.66471 * 9 8 7 11 11 C 1.53219 * 106.35374 * 78.05958 * 9 8 7 12 12 N 1.46528 * 110.20566 * 202.94329 * 11 9 8 13 13 C 1.34780 * 121.00781 * 235.62846 * 12 11 9 14 14 O 1.21273 * 120.00235 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99472 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.46758 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99912 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99886 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99925 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99962 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99942 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46813 * 59.99739 * 21 19 17 23 23 H 1.48497 * 109.46769 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46980 * 300.00083 * 21 19 17 25 25 C 1.47146 * 117.97785 * 55.59546 * 12 11 9 26 26 C 1.53044 * 107.68442 * 302.56401 * 25 12 11 27 27 C 1.46459 * 126.05632 * 180.02562 * 6 4 3 28 28 H 1.09003 * 108.34856 * 269.83418 * 27 6 4 29 29 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 33 33 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 34 34 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 36 36 H 1.08992 * 109.90491 * 300.98157 * 7 6 4 37 37 H 1.09008 * 109.89830 * 62.22105 * 7 6 4 38 38 H 1.09004 * 111.01818 * 264.88253 * 8 7 6 39 39 H 1.09001 * 110.79482 * 141.45519 * 8 7 6 40 40 H 1.09003 * 109.34591 * 323.16355 * 11 9 8 41 41 H 1.08992 * 109.34712 * 82.86384 * 11 9 8 42 42 H 1.08994 * 109.47206 * 299.99105 * 15 13 12 43 43 H 1.09001 * 109.47542 * 59.99871 * 15 13 12 44 44 H 0.96999 * 119.99719 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.80982 * 62.10813 * 25 12 11 46 46 H 1.08998 * 109.81729 * 182.95272 * 25 12 11 47 47 H 1.08992 * 109.15076 * 293.98450 * 26 25 12 48 48 H 1.09002 * 109.14721 * 174.82176 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2210 2.6097 -0.0002 7 6 3.6226 3.9571 -0.0056 8 6 4.7864 4.9724 -0.0402 9 6 5.9501 4.1326 -0.6523 10 1 6.9349 4.5283 -0.4042 11 6 5.6898 4.0701 -2.1609 12 7 6.3641 2.9067 -2.7431 13 6 7.2329 3.0466 -3.7639 14 8 7.4665 4.1479 -4.2148 15 6 7.9141 1.8344 -4.3450 16 16 9.0111 2.3460 -5.6908 17 6 9.6572 0.7787 -6.1713 18 1 9.3397 -0.1168 -5.6577 19 6 10.5742 0.6950 -7.2099 20 7 10.9615 1.7864 -7.8355 21 14 11.2586 -0.9667 -7.7199 22 1 10.1452 -1.8490 -8.1523 23 1 12.2123 -0.7854 -8.8437 24 1 11.9629 -1.5864 -6.5687 25 6 6.0644 1.5812 -2.1788 26 6 6.3975 1.6254 -0.6857 27 6 5.6774 2.7641 -0.0013 28 1 6.0191 2.8025 1.0331 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 2.9936 4.0803 -0.8872 37 1 3.0316 4.1042 0.8984 38 1 5.0404 5.3103 0.9646 39 1 4.5421 5.8195 -0.6812 40 1 4.6173 3.9926 -2.3394 41 1 6.0694 4.9773 -2.6307 42 1 8.4972 1.3384 -3.5691 43 1 7.1627 1.1455 -4.7312 44 1 11.6020 1.7278 -8.5616 45 1 5.0074 1.3521 -2.3150 46 1 6.6731 0.8234 -2.6720 47 1 7.4725 1.7566 -0.5630 48 1 6.0981 0.6842 -0.2246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738371762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:19 Heat of formation + Delta-G solvation = -73.481696 kcal Electronic energy + Delta-G solvation = -28179.582996 eV Core-core repulsion = 24360.354108 eV Total energy + Delta-G solvation = -3819.228888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30109 -39.33891 -38.09401 -35.54395 -34.69820 -32.81869 -32.40552 -31.80226 -29.83681 -28.26299 -28.14002 -25.57481 -25.10043 -23.90383 -22.93070 -21.89055 -20.47899 -19.60854 -18.51968 -17.59739 -17.06078 -16.96041 -16.53046 -16.04849 -15.82320 -15.29126 -14.99206 -14.78092 -14.26104 -14.17064 -14.12609 -13.85482 -13.71464 -13.49787 -13.20111 -12.90441 -12.67222 -12.59343 -12.38591 -12.23981 -12.14343 -12.02100 -11.84732 -11.59856 -11.52940 -11.22810 -11.08803 -11.02443 -11.01477 -10.96993 -10.83225 -10.72591 -9.78774 -9.67397 -9.32840 -9.03624 -8.94427 -8.45176 -8.20781 -6.47771 -6.19224 -3.89713 2.37444 2.64159 2.95770 3.07480 3.25758 3.28068 3.31284 3.62015 3.99613 4.12701 4.22898 4.41064 4.47383 4.53327 4.62655 4.70532 4.85333 4.89596 4.92473 5.00568 5.07991 5.12863 5.15787 5.16153 5.21344 5.25337 5.26664 5.36967 5.48598 5.52416 5.56967 5.62436 5.70101 5.75002 5.79942 5.80198 5.81338 5.89802 5.91700 5.98436 6.08309 6.16529 6.25209 6.67527 7.23875 7.59809 7.62315 7.93054 8.37674 8.58630 9.26025 10.88159 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.002663 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.880007 B =10510.216211 C =11720.066834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.136 4.136 4 C 0.529 3.471 5 O -0.532 6.532 6 N -0.614 5.614 7 C 0.100 3.900 8 C -0.129 4.129 9 C -0.112 4.112 10 H 0.106 0.894 11 C 0.121 3.879 12 N -0.620 5.620 13 C 0.537 3.463 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.119 3.881 26 C -0.150 4.150 27 C 0.147 3.853 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.431 3.105 20.961 29.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.176 4.176 4 C 0.318 3.682 5 O -0.409 6.409 6 N -0.350 5.350 7 C -0.023 4.023 8 C -0.168 4.168 9 C -0.132 4.132 10 H 0.124 0.876 11 C -0.002 4.002 12 N -0.355 5.355 13 C 0.325 3.675 14 O -0.394 6.394 15 C -0.300 4.300 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.004 4.004 26 C -0.188 4.188 27 C 0.044 3.956 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.695 4.170 20.127 28.467 hybrid contribution 0.091 -2.210 0.296 2.231 sum -19.604 1.960 20.423 28.377 Atomic orbital electron populations 1.21791 0.95480 1.02041 1.01705 1.21291 0.95261 0.94552 1.03683 1.21714 0.91532 1.00234 1.04143 1.20414 0.90023 0.82036 0.75681 1.90657 1.69912 1.30553 1.49758 1.48414 1.07065 1.05776 1.73695 1.22162 0.96550 0.81781 1.01820 1.22912 0.94081 0.97514 1.02247 1.22863 0.99757 0.94692 0.95928 0.87592 1.21420 0.96659 0.90735 0.91387 1.48092 1.44855 1.07575 1.35022 1.20317 0.77848 0.90806 0.78494 1.90677 1.61972 1.27223 1.59490 1.23546 1.03269 0.98672 1.04560 1.85354 1.50001 1.12657 1.35439 1.22824 1.30245 0.93292 1.21921 0.90997 1.24987 0.95569 0.97724 0.95274 1.70011 1.30940 1.27518 1.21889 0.86229 0.78739 0.82376 0.78199 1.19922 1.20819 1.19929 1.21601 1.01078 0.84516 0.93225 1.21895 1.00481 1.00416 0.96023 1.20958 0.80248 0.95070 0.99339 0.91651 0.92791 0.92659 0.92337 0.91246 0.91065 0.89061 0.89171 0.91101 0.91117 0.90119 0.89314 0.92030 0.88762 0.89259 0.89356 0.92160 0.91862 0.89149 0.90683 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.11 -0.81 5.22 -26.73 -0.14 -0.95 16 3 C -0.14 -0.90 4.92 -27.89 -0.14 -1.04 16 4 C 0.53 5.17 7.04 -10.99 -0.08 5.09 16 5 O -0.53 -6.97 13.25 5.55 0.07 -6.90 16 6 N -0.61 -5.24 3.06 -164.98 -0.50 -5.75 16 7 C 0.10 0.56 5.77 -2.75 -0.02 0.54 16 8 C -0.13 -0.73 6.29 -24.34 -0.15 -0.88 16 9 C -0.11 -1.00 3.86 -88.38 -0.34 -1.34 16 10 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 11 C 0.12 1.44 5.46 -3.91 -0.02 1.41 16 12 N -0.62 -9.22 2.93 -172.99 -0.51 -9.73 16 13 C 0.54 10.52 7.73 -10.98 -0.08 10.44 16 14 O -0.52 -11.95 15.29 5.56 0.09 -11.86 16 15 C -0.15 -3.17 4.51 36.01 0.16 -3.01 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 17 C -0.53 -15.48 9.50 30.94 0.29 -15.19 16 18 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 21 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.12 1.57 6.18 -3.67 -0.02 1.55 16 26 C -0.15 -1.74 4.98 -27.65 -0.14 -1.87 16 27 C 0.15 1.41 2.80 -68.39 -0.19 1.22 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.36 7.73 -51.93 -0.40 -0.05 16 37 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.43 7.98 -51.93 -0.41 0.02 16 40 H 0.06 0.66 6.77 -51.93 -0.35 0.31 16 41 H 0.09 1.27 6.99 -51.93 -0.36 0.91 16 42 H 0.09 1.77 7.78 -51.92 -0.40 1.37 16 43 H 0.09 1.77 7.89 -51.91 -0.41 1.36 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16 46 H 0.09 1.25 5.99 -51.93 -0.31 0.94 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.11 1.37 5.76 -51.93 -0.30 1.07 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -35.51 386.79 -10.07 -45.57 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.95 Total: -1.76 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.59 Total: -2.48 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.28 Total: -41.20 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.16 Total: -18.76 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.51 -10.07 -45.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738371762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.909 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds