Wall clock time and date at job start Sat Apr 11 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.50696 * 109.47242 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99909 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00395 * 180.02562 * 4 3 2 7 7 C 1.47431 * 126.05110 * 359.69049 * 6 4 3 8 8 C 1.54487 * 107.15629 * 181.45094 * 7 6 4 9 9 C 1.56019 * 102.52458 * 23.21676 * 8 7 6 10 10 H 1.08996 * 112.90064 * 202.66471 * 9 8 7 11 11 C 1.53219 * 106.35374 * 78.05958 * 9 8 7 12 12 N 1.46528 * 110.20566 * 202.94329 * 11 9 8 13 13 C 1.34780 * 121.00781 * 235.62846 * 12 11 9 14 14 O 1.21273 * 120.00235 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99472 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.46758 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99912 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99886 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99925 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99962 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99942 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46813 * 59.99739 * 21 19 17 23 23 H 1.48497 * 109.46769 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46980 * 300.00083 * 21 19 17 25 25 C 1.47146 * 117.97785 * 55.59546 * 12 11 9 26 26 C 1.53044 * 107.68442 * 302.56401 * 25 12 11 27 27 C 1.46459 * 126.05632 * 180.02562 * 6 4 3 28 28 H 1.09003 * 108.34856 * 269.83418 * 27 6 4 29 29 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 33 33 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 34 34 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 36 36 H 1.08992 * 109.90491 * 300.98157 * 7 6 4 37 37 H 1.09008 * 109.89830 * 62.22105 * 7 6 4 38 38 H 1.09004 * 111.01818 * 264.88253 * 8 7 6 39 39 H 1.09001 * 110.79482 * 141.45519 * 8 7 6 40 40 H 1.09003 * 109.34591 * 323.16355 * 11 9 8 41 41 H 1.08992 * 109.34712 * 82.86384 * 11 9 8 42 42 H 1.08994 * 109.47206 * 299.99105 * 15 13 12 43 43 H 1.09001 * 109.47542 * 59.99871 * 15 13 12 44 44 H 0.96999 * 119.99719 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.80982 * 62.10813 * 25 12 11 46 46 H 1.08998 * 109.81729 * 182.95272 * 25 12 11 47 47 H 1.08992 * 109.15076 * 293.98450 * 26 25 12 48 48 H 1.09002 * 109.14721 * 174.82176 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2210 2.6097 -0.0002 7 6 3.6226 3.9571 -0.0056 8 6 4.7864 4.9724 -0.0402 9 6 5.9501 4.1326 -0.6523 10 1 6.9349 4.5283 -0.4042 11 6 5.6898 4.0701 -2.1609 12 7 6.3641 2.9067 -2.7431 13 6 7.2329 3.0466 -3.7639 14 8 7.4665 4.1479 -4.2148 15 6 7.9141 1.8344 -4.3450 16 16 9.0111 2.3460 -5.6908 17 6 9.6572 0.7787 -6.1713 18 1 9.3397 -0.1168 -5.6577 19 6 10.5742 0.6950 -7.2099 20 7 10.9615 1.7864 -7.8355 21 14 11.2586 -0.9667 -7.7199 22 1 10.1452 -1.8490 -8.1523 23 1 12.2123 -0.7854 -8.8437 24 1 11.9629 -1.5864 -6.5687 25 6 6.0644 1.5812 -2.1788 26 6 6.3975 1.6254 -0.6857 27 6 5.6774 2.7641 -0.0013 28 1 6.0191 2.8025 1.0331 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 2.9936 4.0803 -0.8872 37 1 3.0316 4.1042 0.8984 38 1 5.0404 5.3103 0.9646 39 1 4.5421 5.8195 -0.6812 40 1 4.6173 3.9926 -2.3394 41 1 6.0694 4.9773 -2.6307 42 1 8.4972 1.3384 -3.5691 43 1 7.1627 1.1455 -4.7312 44 1 11.6020 1.7278 -8.5616 45 1 5.0074 1.3521 -2.3150 46 1 6.6731 0.8234 -2.6720 47 1 7.4725 1.7566 -0.5630 48 1 6.0981 0.6842 -0.2246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738371762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:19 Heat of formation + Delta-G solvation = -95.836651 kcal Electronic energy + Delta-G solvation = -28180.552380 eV Core-core repulsion = 24360.354108 eV Total energy + Delta-G solvation = -3820.198271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.14538 -40.56845 -39.04439 -36.68588 -35.29330 -34.61116 -33.62785 -32.79808 -31.18228 -29.18011 -28.77021 -27.71080 -26.23732 -24.65827 -23.76454 -22.45975 -21.44958 -20.57817 -19.85691 -19.17683 -18.24502 -17.71527 -17.50908 -17.08572 -16.90014 -16.86565 -16.31318 -15.93801 -15.84870 -15.18828 -15.08559 -14.76705 -14.67439 -14.46824 -14.32617 -14.07568 -13.83260 -13.66974 -13.29967 -13.18997 -13.07404 -12.92886 -12.89260 -12.78983 -12.65413 -12.55283 -12.51473 -12.07668 -11.89421 -11.83623 -11.75952 -11.63686 -11.59423 -11.15490 -10.91711 -10.47357 -10.31927 -9.77762 -9.54233 -8.70370 -8.36933 -6.15680 1.21891 1.41967 1.42434 1.50218 1.53315 1.68027 2.00586 2.04715 2.24965 2.96824 3.19842 3.33601 3.47869 3.66143 3.74502 3.83276 3.95898 3.99730 4.03029 4.12078 4.17596 4.23347 4.25924 4.31780 4.36712 4.40884 4.54924 4.62790 4.70875 4.72331 4.76877 4.77743 4.84966 4.90371 4.92406 4.99454 5.11884 5.13887 5.19446 5.25073 5.29485 5.38738 5.41961 5.48119 5.54491 6.16912 6.20934 6.59120 7.03930 7.07510 7.23230 8.72120 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.002663 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.880007 B =10510.216211 C =11720.066834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.128 4.128 4 C 0.520 3.480 5 O -0.575 6.575 6 N -0.614 5.614 7 C 0.095 3.905 8 C -0.118 4.118 9 C -0.110 4.110 10 H 0.104 0.896 11 C 0.117 3.883 12 N -0.606 5.606 13 C 0.537 3.463 14 O -0.560 6.560 15 C -0.126 4.126 16 S -0.143 6.143 17 C -0.549 4.549 18 H 0.079 0.921 19 C 0.015 3.985 20 N -0.909 5.909 21 Si 0.998 3.002 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.263 1.263 25 C 0.120 3.880 26 C -0.143 4.143 27 C 0.145 3.855 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.272 0.728 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.429 2.943 22.852 32.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.168 4.168 4 C 0.311 3.689 5 O -0.455 6.455 6 N -0.348 5.348 7 C -0.027 4.027 8 C -0.156 4.156 9 C -0.130 4.130 10 H 0.122 0.878 11 C -0.005 4.005 12 N -0.339 5.339 13 C 0.325 3.675 14 O -0.439 6.439 15 C -0.277 4.277 16 S 0.084 5.916 17 C -0.697 4.697 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.546 5.546 21 Si 0.819 3.181 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.002 4.002 26 C -0.182 4.182 27 C 0.041 3.959 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.744 4.029 22.067 31.241 hybrid contribution 0.625 -2.141 -0.191 2.238 sum -21.118 1.888 21.876 30.465 Atomic orbital electron populations 1.21754 0.93861 1.02247 1.02663 1.21251 0.96585 0.95006 1.01927 1.21727 0.89069 0.99900 1.06071 1.21024 0.91284 0.81676 0.74919 1.90642 1.70913 1.32147 1.51793 1.48503 1.06570 1.06803 1.72898 1.22429 0.96685 0.79781 1.03786 1.22928 0.92173 0.97296 1.03169 1.22792 1.01310 0.95332 0.93533 0.87830 1.21706 0.97065 0.88530 0.93170 1.48064 1.43105 1.09452 1.33306 1.20007 0.78615 0.89461 0.79463 1.90661 1.63791 1.28213 1.61227 1.23367 1.02283 0.99721 1.02314 1.85464 1.52451 1.14528 1.39106 1.23147 1.30721 0.93342 1.22484 0.90267 1.26118 0.95639 1.02228 0.94991 1.70168 1.31650 1.30242 1.22512 0.85015 0.78198 0.76755 0.78103 1.18731 1.20069 1.18734 1.21670 1.01041 0.83245 0.94276 1.21800 1.00596 1.01150 0.94639 1.20920 0.81151 0.94285 0.99503 0.90713 0.91433 0.92004 0.92620 0.92663 0.93299 0.87451 0.86571 0.89971 0.88395 0.88289 0.88089 0.90186 0.90444 0.87972 0.88196 0.91879 0.91477 0.90047 0.91107 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.63 16 2 C -0.11 -1.49 5.22 30.60 0.16 -1.33 16 3 C -0.13 -1.35 4.92 29.85 0.15 -1.20 16 4 C 0.52 9.22 7.04 87.66 0.62 9.83 16 5 O -0.57 -14.88 13.25 -3.04 -0.04 -14.92 16 6 N -0.61 -8.80 3.06 -794.26 -2.43 -11.23 16 7 C 0.09 0.66 5.77 86.71 0.50 1.16 16 8 C -0.12 -0.87 6.29 32.15 0.20 -0.67 16 9 C -0.11 -1.71 3.86 -9.35 -0.04 -1.75 16 10 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 11 C 0.12 2.62 5.46 86.45 0.47 3.09 16 12 N -0.61 -17.79 2.93 -819.59 -2.40 -20.19 16 13 C 0.54 21.39 7.73 87.66 0.68 22.07 16 14 O -0.56 -26.64 15.29 -3.01 -0.05 -26.69 16 15 C -0.13 -5.42 4.51 71.24 0.32 -5.10 16 16 S -0.14 -8.19 20.57 -56.49 -1.16 -9.35 16 17 C -0.55 -32.32 9.50 67.95 0.65 -31.67 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 19 C 0.02 0.89 5.49 84.86 0.47 1.35 16 20 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 21 Si 1.00 44.57 29.55 68.60 2.03 46.60 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 C 0.12 3.12 6.18 86.27 0.53 3.65 16 26 C -0.14 -3.24 4.98 30.00 0.15 -3.09 16 27 C 0.15 2.50 2.80 44.72 0.13 2.63 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 33 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.44 7.73 -2.39 -0.02 0.42 16 37 H 0.10 0.24 8.14 -2.38 -0.02 0.23 16 38 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.10 0.58 7.98 -2.39 -0.02 0.56 16 40 H 0.08 1.51 6.77 -2.39 -0.02 1.50 16 41 H 0.08 2.05 6.99 -2.39 -0.02 2.04 16 42 H 0.10 4.10 7.78 -2.40 -0.02 4.08 16 43 H 0.10 4.04 7.89 -2.39 -0.02 4.02 16 44 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.07 1.73 7.28 -2.39 -0.02 1.71 16 46 H 0.08 2.24 5.99 -2.39 -0.01 2.23 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.10 2.49 5.76 -2.39 -0.01 2.47 16 Total: -1.00 -80.74 386.79 2.87 -77.88 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.94 Total: 15.92 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.70 Total: -1.68 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -4.55 Total: -87.75 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.09 Total: -41.61 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Total: -80.74 2.87 -77.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738371762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.960 kcal (2) G-P(sol) polarization free energy of solvation -80.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds