Wall clock time and date at job start Sat Apr 11 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47532 * 2 1 4 4 C 1.50698 * 109.47496 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99700 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00716 * 179.97438 * 4 3 2 7 7 C 1.47437 * 126.04929 * 359.97438 * 6 4 3 8 8 C 1.54503 * 107.14510 * 178.42543 * 7 6 4 9 9 C 1.56017 * 102.62131 * 337.16047 * 8 7 6 10 10 H 1.08998 * 112.90110 * 157.10981 * 9 8 7 11 11 C 1.53206 * 107.04745 * 281.49196 * 9 8 7 12 12 N 1.46524 * 110.20860 * 157.39653 * 11 9 8 13 13 C 1.34772 * 121.01175 * 124.37529 * 12 11 9 14 14 O 1.21285 * 120.00078 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99741 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.46877 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99986 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00029 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00191 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00178 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99984 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47209 * 89.99697 * 21 19 17 23 23 H 1.48498 * 109.47064 * 210.00040 * 21 19 17 24 24 H 1.48498 * 109.46793 * 329.99850 * 21 19 17 25 25 C 1.47144 * 117.97809 * 304.39691 * 12 11 9 26 26 C 1.51623 * 107.88678 * 57.00699 * 25 12 11 27 27 C 1.46464 * 126.06038 * 179.97438 * 6 4 3 28 28 H 1.08999 * 107.74808 * 90.42743 * 27 6 4 29 29 H 1.09000 * 109.46749 * 59.99720 * 1 2 3 30 30 H 1.08998 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47155 * 300.00345 * 1 2 3 32 32 H 1.09001 * 109.47155 * 239.99655 * 2 1 3 33 33 H 1.09000 * 109.46749 * 120.00279 * 2 1 3 34 34 H 1.09001 * 109.47182 * 59.99671 * 3 2 1 35 35 H 1.09000 * 109.47331 * 299.99923 * 3 2 1 36 36 H 1.08994 * 109.90286 * 59.04350 * 7 6 4 37 37 H 1.08995 * 110.05279 * 297.88931 * 7 6 4 38 38 H 1.09001 * 110.77432 * 218.88291 * 8 7 6 39 39 H 1.09000 * 110.78317 * 95.44925 * 8 7 6 40 40 H 1.09007 * 109.34632 * 277.62206 * 11 9 8 41 41 H 1.08995 * 109.35177 * 37.31523 * 11 9 8 42 42 H 1.09002 * 109.47366 * 300.00107 * 15 13 12 43 43 H 1.08993 * 109.47101 * 60.00577 * 15 13 12 44 44 H 0.96996 * 120.00014 * 180.02562 * 20 19 17 45 45 H 1.08991 * 109.81911 * 176.98474 * 25 12 11 46 46 H 1.09000 * 109.81806 * 297.89565 * 25 12 11 47 47 H 1.09005 * 109.46814 * 185.19295 * 26 25 12 48 48 H 1.08999 * 108.02836 * 66.50222 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2211 2.6095 -0.0013 7 6 3.6227 3.9570 -0.0019 8 6 4.7867 4.9722 0.0380 9 6 5.9507 4.1324 0.6495 10 1 6.9354 4.5280 0.4006 11 6 5.7100 4.0648 2.1610 12 7 6.3982 2.9040 2.7318 13 6 7.2790 3.0464 3.7419 14 8 7.5120 4.1480 4.1925 15 6 7.9735 1.8365 4.3121 16 16 9.0847 2.3512 5.6449 17 6 9.7447 0.7864 6.1144 18 1 9.4260 -0.1097 5.6026 19 6 10.6750 0.7053 7.1413 20 7 11.1684 -0.4636 7.4917 21 14 11.2269 2.2552 8.0261 22 1 10.3360 2.5061 9.1874 23 1 12.6232 2.0833 8.5014 24 1 11.1600 3.4083 7.0929 25 6 6.0989 1.5781 2.1682 26 6 6.3981 1.6252 0.6826 27 6 5.6776 2.7640 -0.0014 28 1 6.0071 2.8061 -1.0395 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 2.9904 4.0826 0.8769 37 1 3.0333 4.1037 -0.9070 38 1 4.5406 5.8174 0.6808 39 1 5.0399 5.3101 -0.9669 40 1 6.0881 4.9744 2.6279 41 1 4.6406 3.9782 2.3529 42 1 7.2305 1.1432 4.7063 43 1 8.5493 1.3450 3.5280 44 1 11.8183 -0.5203 8.2096 45 1 6.7189 0.8228 2.6510 46 1 5.0451 1.3426 2.3172 47 1 6.0983 0.6840 0.2216 48 1 7.4731 1.7565 0.5590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738371763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:23 Heat of formation + Delta-G solvation = -73.436024 kcal Electronic energy + Delta-G solvation = -28206.601926 eV Core-core repulsion = 24387.375019 eV Total energy + Delta-G solvation = -3819.226907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34708 -39.42887 -38.14960 -35.66703 -34.71404 -32.86932 -32.42002 -31.87213 -29.96326 -28.36958 -28.18201 -25.66703 -25.23129 -23.94150 -22.95016 -21.90942 -20.54854 -19.67458 -18.57095 -17.61210 -17.11224 -17.00088 -16.63266 -16.07895 -15.87226 -15.36587 -15.05458 -14.93599 -14.32444 -14.17109 -14.14377 -13.93886 -13.67236 -13.55145 -13.23465 -13.04614 -12.77387 -12.70586 -12.41320 -12.34352 -12.20418 -12.07313 -11.92564 -11.65481 -11.53772 -11.26433 -11.24766 -11.10280 -11.03711 -10.99410 -10.85557 -10.55458 -9.84386 -9.69608 -9.45310 -8.98877 -8.97195 -8.54384 -8.47259 -6.90102 -6.26868 -3.98552 2.35673 2.61512 2.72616 2.94216 3.20806 3.34319 3.51530 3.60237 3.96080 4.09150 4.34483 4.36926 4.43898 4.52138 4.60270 4.65335 4.68788 4.82908 4.86272 4.95123 4.99594 5.06679 5.11575 5.12035 5.16280 5.20106 5.23870 5.27430 5.35874 5.44748 5.51792 5.54482 5.69170 5.70114 5.73913 5.76927 5.79850 5.80734 5.82000 5.97591 6.02979 6.05618 6.21282 6.58617 7.21361 7.49387 7.91172 7.96272 8.44149 8.45299 9.19213 10.82416 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016875 B = 0.002657 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.868546 B =10535.724736 C =11534.942909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.136 4.136 4 C 0.529 3.471 5 O -0.531 6.531 6 N -0.615 5.615 7 C 0.100 3.900 8 C -0.128 4.128 9 C -0.113 4.113 10 H 0.105 0.895 11 C 0.122 3.878 12 N -0.618 5.618 13 C 0.536 3.464 14 O -0.521 6.521 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.118 3.882 26 C -0.150 4.150 27 C 0.148 3.852 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.215 8.247 -20.617 30.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.176 4.176 4 C 0.318 3.682 5 O -0.408 6.408 6 N -0.351 5.351 7 C -0.023 4.023 8 C -0.167 4.167 9 C -0.133 4.133 10 H 0.123 0.877 11 C -0.002 4.002 12 N -0.353 5.353 13 C 0.324 3.676 14 O -0.396 6.396 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.005 4.005 26 C -0.189 4.189 27 C 0.045 3.955 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.082 0.918 47 H 0.127 0.873 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.471 9.115 -19.815 29.913 hybrid contribution 0.018 -0.769 -0.093 0.775 sum -20.453 8.346 -19.908 29.737 Atomic orbital electron populations 1.21790 0.95473 1.02062 1.01690 1.21291 0.95270 0.94529 1.03716 1.21713 0.91506 1.00259 1.04128 1.20422 0.90037 0.82029 0.75679 1.90662 1.69908 1.30530 1.49691 1.48431 1.07069 1.05768 1.73782 1.22158 0.96537 0.81786 1.01864 1.22898 0.94026 0.97498 1.02231 1.22846 0.99801 0.94788 0.95846 0.87664 1.21407 0.96549 0.90645 0.91551 1.48059 1.43735 1.07817 1.35704 1.20284 0.78077 0.90678 0.78570 1.90677 1.62647 1.27098 1.59206 1.23302 1.02260 0.98656 1.02917 1.84746 1.50984 1.15170 1.40784 1.22313 1.29378 0.91863 1.23199 0.89389 1.24717 0.94574 0.96451 0.95594 1.69941 1.29163 1.23562 1.29050 0.86731 0.78777 0.84527 0.81784 1.19233 1.19961 1.15932 1.21366 1.01403 0.84356 0.93378 1.21631 1.00632 1.00583 0.96018 1.20971 0.80255 0.94947 0.99341 0.91572 0.92798 0.92314 0.92671 0.91225 0.91043 0.89068 0.89182 0.91154 0.91079 0.89322 0.90072 0.88756 0.91970 0.88614 0.88497 0.91957 0.88946 0.91810 0.87258 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.11 -0.80 5.22 -26.73 -0.14 -0.94 16 3 C -0.14 -0.88 4.92 -27.89 -0.14 -1.02 16 4 C 0.53 5.05 7.12 -10.99 -0.08 4.98 16 5 O -0.53 -6.88 13.28 5.55 0.07 -6.80 16 6 N -0.62 -5.06 3.09 -164.96 -0.51 -5.57 16 7 C 0.10 0.52 5.80 -2.74 -0.02 0.51 16 8 C -0.13 -0.67 6.31 -24.33 -0.15 -0.82 16 9 C -0.11 -0.95 3.81 -88.39 -0.34 -1.28 16 10 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 11 C 0.12 1.36 5.49 -3.92 -0.02 1.34 16 12 N -0.62 -8.75 2.94 -173.85 -0.51 -9.26 16 13 C 0.54 9.96 7.73 -10.99 -0.08 9.88 16 14 O -0.52 -11.36 15.29 5.55 0.08 -11.27 16 15 C -0.12 -2.45 4.51 36.01 0.16 -2.29 16 16 S -0.14 -3.70 18.55 -107.50 -1.99 -5.70 16 17 C -0.52 -15.21 10.04 30.94 0.31 -14.89 16 18 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.88 13.97 55.49 0.78 -26.11 16 21 Si 0.86 22.02 27.74 -169.99 -4.72 17.30 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 25 C 0.12 1.50 6.20 -4.39 -0.03 1.47 16 26 C -0.15 -1.69 4.85 -28.37 -0.14 -1.83 16 27 C 0.15 1.37 2.81 -68.39 -0.19 1.17 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.20 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.33 7.80 -51.93 -0.41 -0.08 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.39 7.99 -51.93 -0.42 -0.02 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 41 H 0.06 0.63 6.90 -51.93 -0.36 0.27 16 42 H 0.10 1.85 7.90 -51.91 -0.41 1.44 16 43 H 0.10 1.85 7.78 -51.92 -0.40 1.45 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.09 1.23 5.99 -51.93 -0.31 0.92 16 46 H 0.06 0.82 7.37 -51.93 -0.38 0.44 16 47 H 0.11 1.37 5.76 -51.93 -0.30 1.07 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -35.18 384.50 -9.58 -44.75 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.99 Total: -1.67 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.58 Total: -1.47 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.25 Total: -40.94 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.16 Total: -18.08 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.30 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.18 -9.58 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738371763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.682 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds