Wall clock time and date at job start Sat Apr 11 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47532 * 2 1 4 4 C 1.50698 * 109.47496 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99700 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00716 * 179.97438 * 4 3 2 7 7 C 1.47437 * 126.04929 * 359.97438 * 6 4 3 8 8 C 1.54503 * 107.14510 * 178.42543 * 7 6 4 9 9 C 1.56017 * 102.62131 * 337.16047 * 8 7 6 10 10 H 1.08998 * 112.90110 * 157.10981 * 9 8 7 11 11 C 1.53206 * 107.04745 * 281.49196 * 9 8 7 12 12 N 1.46524 * 110.20860 * 157.39653 * 11 9 8 13 13 C 1.34772 * 121.01175 * 124.37529 * 12 11 9 14 14 O 1.21285 * 120.00078 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99741 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.46877 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99986 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00029 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00191 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00178 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99984 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47209 * 89.99697 * 21 19 17 23 23 H 1.48498 * 109.47064 * 210.00040 * 21 19 17 24 24 H 1.48498 * 109.46793 * 329.99850 * 21 19 17 25 25 C 1.47144 * 117.97809 * 304.39691 * 12 11 9 26 26 C 1.51623 * 107.88678 * 57.00699 * 25 12 11 27 27 C 1.46464 * 126.06038 * 179.97438 * 6 4 3 28 28 H 1.08999 * 107.74808 * 90.42743 * 27 6 4 29 29 H 1.09000 * 109.46749 * 59.99720 * 1 2 3 30 30 H 1.08998 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47155 * 300.00345 * 1 2 3 32 32 H 1.09001 * 109.47155 * 239.99655 * 2 1 3 33 33 H 1.09000 * 109.46749 * 120.00279 * 2 1 3 34 34 H 1.09001 * 109.47182 * 59.99671 * 3 2 1 35 35 H 1.09000 * 109.47331 * 299.99923 * 3 2 1 36 36 H 1.08994 * 109.90286 * 59.04350 * 7 6 4 37 37 H 1.08995 * 110.05279 * 297.88931 * 7 6 4 38 38 H 1.09001 * 110.77432 * 218.88291 * 8 7 6 39 39 H 1.09000 * 110.78317 * 95.44925 * 8 7 6 40 40 H 1.09007 * 109.34632 * 277.62206 * 11 9 8 41 41 H 1.08995 * 109.35177 * 37.31523 * 11 9 8 42 42 H 1.09002 * 109.47366 * 300.00107 * 15 13 12 43 43 H 1.08993 * 109.47101 * 60.00577 * 15 13 12 44 44 H 0.96996 * 120.00014 * 180.02562 * 20 19 17 45 45 H 1.08991 * 109.81911 * 176.98474 * 25 12 11 46 46 H 1.09000 * 109.81806 * 297.89565 * 25 12 11 47 47 H 1.09005 * 109.46814 * 185.19295 * 26 25 12 48 48 H 1.08999 * 108.02836 * 66.50222 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2211 2.6095 -0.0013 7 6 3.6227 3.9570 -0.0019 8 6 4.7867 4.9722 0.0380 9 6 5.9507 4.1324 0.6495 10 1 6.9354 4.5280 0.4006 11 6 5.7100 4.0648 2.1610 12 7 6.3982 2.9040 2.7318 13 6 7.2790 3.0464 3.7419 14 8 7.5120 4.1480 4.1925 15 6 7.9735 1.8365 4.3121 16 16 9.0847 2.3512 5.6449 17 6 9.7447 0.7864 6.1144 18 1 9.4260 -0.1097 5.6026 19 6 10.6750 0.7053 7.1413 20 7 11.1684 -0.4636 7.4917 21 14 11.2269 2.2552 8.0261 22 1 10.3360 2.5061 9.1874 23 1 12.6232 2.0833 8.5014 24 1 11.1600 3.4083 7.0929 25 6 6.0989 1.5781 2.1682 26 6 6.3981 1.6252 0.6826 27 6 5.6776 2.7640 -0.0014 28 1 6.0071 2.8061 -1.0395 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 2.9904 4.0826 0.8769 37 1 3.0333 4.1037 -0.9070 38 1 4.5406 5.8174 0.6808 39 1 5.0399 5.3101 -0.9669 40 1 6.0881 4.9744 2.6279 41 1 4.6406 3.9782 2.3529 42 1 7.2305 1.1432 4.7063 43 1 8.5493 1.3450 3.5280 44 1 11.8183 -0.5203 8.2096 45 1 6.7189 0.8228 2.6510 46 1 5.0451 1.3426 2.3172 47 1 6.0983 0.6840 0.2216 48 1 7.4731 1.7565 0.5590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738371763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:22 Heat of formation + Delta-G solvation = -95.688822 kcal Electronic energy + Delta-G solvation = -28207.566880 eV Core-core repulsion = 24387.375019 eV Total energy + Delta-G solvation = -3820.191861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16537 -40.60683 -39.05721 -36.75154 -35.29885 -34.69944 -33.64874 -32.83709 -31.25172 -29.24145 -28.78413 -27.89592 -26.29063 -24.65182 -23.76252 -22.46120 -21.49780 -20.60136 -19.89559 -19.18928 -18.30186 -17.72328 -17.53218 -17.21768 -17.00308 -16.88913 -16.32757 -15.90474 -15.80886 -15.22196 -15.12192 -14.93978 -14.77618 -14.60229 -14.38166 -14.10364 -13.85008 -13.73644 -13.38972 -13.28460 -13.11957 -13.03215 -12.94212 -12.79342 -12.68845 -12.55486 -12.49841 -12.07257 -11.91425 -11.85561 -11.83215 -11.64596 -11.59892 -11.19353 -10.97500 -10.57798 -10.47255 -9.80532 -9.55209 -9.03704 -8.53700 -6.25656 0.93498 1.30085 1.42969 1.45073 1.51948 1.67833 1.99532 2.01134 2.23319 2.63753 2.84168 3.31166 3.42220 3.58755 3.71520 3.82394 3.94193 3.99741 4.02534 4.10515 4.11884 4.22687 4.25862 4.30695 4.33846 4.39430 4.54769 4.62403 4.70714 4.71892 4.75881 4.77309 4.85406 4.89953 4.92530 4.99499 5.11390 5.13567 5.19695 5.24924 5.29072 5.40386 5.46933 5.53219 5.68222 6.08616 6.16547 6.58760 6.90643 7.01080 7.23160 8.59007 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016875 B = 0.002657 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.868546 B =10535.724736 C =11534.942909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.128 4.128 4 C 0.520 3.480 5 O -0.576 6.576 6 N -0.614 5.614 7 C 0.094 3.906 8 C -0.116 4.116 9 C -0.109 4.109 10 H 0.104 0.896 11 C 0.118 3.882 12 N -0.604 5.604 13 C 0.539 3.461 14 O -0.557 6.557 15 C -0.109 4.109 16 S -0.166 6.166 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.045 3.955 20 N -0.917 5.917 21 Si 0.917 3.083 22 H -0.261 1.261 23 H -0.257 1.257 24 H -0.236 1.236 25 C 0.120 3.880 26 C -0.144 4.144 27 C 0.146 3.854 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.278 0.722 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.097 0.903 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.278 10.776 -22.098 33.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.167 4.167 4 C 0.310 3.690 5 O -0.456 6.456 6 N -0.348 5.348 7 C -0.028 4.028 8 C -0.154 4.154 9 C -0.129 4.129 10 H 0.122 0.878 11 C -0.004 4.004 12 N -0.337 5.337 13 C 0.326 3.674 14 O -0.435 6.435 15 C -0.260 4.260 16 S 0.060 5.940 17 C -0.679 4.679 18 H 0.077 0.923 19 C -0.161 4.161 20 N -0.555 5.555 21 Si 0.739 3.261 22 H -0.186 1.186 23 H -0.181 1.181 24 H -0.159 1.159 25 C -0.003 4.003 26 C -0.183 4.183 27 C 0.042 3.958 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.115 0.885 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.574 11.656 -21.337 33.177 hybrid contribution 0.557 -1.648 0.238 1.755 sum -22.018 10.008 -21.099 32.095 Atomic orbital electron populations 1.21753 0.93835 1.02237 1.02685 1.21251 0.96611 0.95064 1.01891 1.21723 0.89070 0.99839 1.06092 1.21031 0.91294 0.81698 0.74929 1.90649 1.70932 1.32202 1.51799 1.48518 1.06619 1.06795 1.72912 1.22435 0.96741 0.79760 1.03818 1.22916 0.92088 0.97281 1.03158 1.22782 1.01377 0.95186 0.93576 0.87788 1.21696 0.96895 0.88558 0.93259 1.48036 1.42103 1.09528 1.34066 1.19883 0.78794 0.89249 0.79479 1.90662 1.64277 1.27813 1.60781 1.23275 1.01531 0.99947 1.01217 1.84577 1.52562 1.13435 1.43406 1.22445 1.29693 0.92563 1.23199 0.92346 1.25608 0.94600 0.99541 0.96320 1.70022 1.29960 1.25588 1.29927 0.85832 0.79200 0.80546 0.80571 1.18555 1.18138 1.15945 1.21400 1.01237 0.83274 0.94352 1.21533 1.00758 1.01247 0.94749 1.20938 0.81094 0.94287 0.99482 0.90750 0.91413 0.92665 0.91959 0.92725 0.93346 0.87377 0.86575 0.89938 0.88473 0.87928 0.88328 0.90021 0.90221 0.87817 0.87575 0.91283 0.90045 0.91537 0.88515 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.63 16 2 C -0.11 -1.51 5.22 30.59 0.16 -1.35 16 3 C -0.13 -1.32 4.92 29.85 0.15 -1.17 16 4 C 0.52 9.10 7.12 87.66 0.62 9.72 16 5 O -0.58 -14.97 13.28 -3.05 -0.04 -15.01 16 6 N -0.61 -8.46 3.09 -794.21 -2.46 -10.92 16 7 C 0.09 0.57 5.80 86.71 0.50 1.08 16 8 C -0.12 -0.73 6.31 32.15 0.20 -0.52 16 9 C -0.11 -1.56 3.81 -9.35 -0.04 -1.59 16 10 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 11 C 0.12 2.41 5.49 86.44 0.47 2.88 16 12 N -0.60 -16.62 2.94 -822.33 -2.41 -19.03 16 13 C 0.54 19.91 7.73 87.66 0.68 20.59 16 14 O -0.56 -24.18 15.29 -3.04 -0.05 -24.23 16 15 C -0.11 -4.46 4.51 71.24 0.32 -4.14 16 16 S -0.17 -8.68 18.55 -56.49 -1.05 -9.73 16 17 C -0.53 -31.86 10.04 67.95 0.68 -31.18 16 18 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 19 C 0.04 2.68 5.50 84.86 0.47 3.14 16 20 N -0.92 -56.90 13.97 21.65 0.30 -56.60 16 21 Si 0.92 45.61 27.74 68.60 1.90 47.51 16 22 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 25 C 0.12 3.01 6.20 85.80 0.53 3.55 16 26 C -0.14 -3.20 4.85 29.53 0.14 -3.05 16 27 C 0.15 2.40 2.81 44.72 0.13 2.53 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.89 8.10 -2.39 -0.02 0.88 16 33 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 0.36 7.80 -2.39 -0.02 0.34 16 37 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.10 0.44 7.99 -2.39 -0.02 0.42 16 39 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.08 1.95 7.00 -2.38 -0.02 1.93 16 41 H 0.08 1.38 6.90 -2.39 -0.02 1.36 16 42 H 0.10 4.07 7.90 -2.39 -0.02 4.05 16 43 H 0.11 4.13 7.78 -2.40 -0.02 4.11 16 44 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 45 H 0.08 2.21 5.99 -2.39 -0.01 2.20 16 46 H 0.07 1.68 7.37 -2.39 -0.02 1.66 16 47 H 0.10 2.48 5.76 -2.38 -0.01 2.46 16 48 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -78.55 384.50 2.84 -75.71 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.90 Total: 12.44 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.74 Total: -0.15 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -4.57 Total: -86.56 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.09 Total: -39.23 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Total: -78.55 2.84 -75.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738371763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.974 kcal (2) G-P(sol) polarization free energy of solvation -78.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds