Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47530 * 2 1 4 4 C 1.50704 * 109.47229 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99860 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99760 * 180.02562 * 4 3 2 7 7 C 1.48155 * 126.40956 * 0.02562 * 6 4 3 8 8 C 1.55288 * 107.04568 * 184.92630 * 7 6 4 9 9 C 1.53747 * 101.83912 * 22.47742 * 8 7 6 10 10 H 1.09004 * 111.30186 * 79.84500 * 9 8 7 11 11 C 1.52244 * 114.73864 * 207.24081 * 9 8 7 12 12 N 1.47726 * 106.35820 * 169.58304 * 11 9 8 13 13 C 1.34773 * 119.68056 * 127.94269 * 12 11 9 14 14 O 1.21281 * 120.00492 * 359.97438 * 13 12 11 15 15 C 1.50707 * 119.99647 * 179.97438 * 13 12 11 16 16 S 1.81005 * 109.46765 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99709 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99887 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00302 * 179.97438 * 17 16 15 20 20 N 1.31640 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00492 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47103 * 59.99942 * 21 19 17 23 23 H 1.48507 * 109.47500 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46976 * 300.00128 * 21 19 17 25 25 C 1.46591 * 120.63414 * 307.95680 * 12 11 9 26 26 C 1.53963 * 110.57407 * 47.80786 * 25 12 11 27 27 C 1.45469 * 126.40186 * 180.02562 * 6 4 3 28 28 H 1.09004 * 108.77027 * 265.97404 * 27 6 4 29 29 H 1.08996 * 109.46937 * 59.99344 * 1 2 3 30 30 H 1.08990 * 109.47494 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46615 * 300.00143 * 1 2 3 32 32 H 1.09005 * 109.46615 * 239.99857 * 2 1 3 33 33 H 1.09005 * 109.46933 * 120.00533 * 2 1 3 34 34 H 1.09003 * 109.46793 * 60.00111 * 3 2 1 35 35 H 1.08994 * 109.47046 * 300.00431 * 3 2 1 36 36 H 1.08998 * 109.91737 * 65.57257 * 7 6 4 37 37 H 1.09008 * 109.91782 * 304.27637 * 7 6 4 38 38 H 1.09003 * 110.95131 * 264.34225 * 8 7 6 39 39 H 1.08996 * 110.95917 * 140.61727 * 8 7 6 40 40 H 1.08996 * 110.06900 * 288.78746 * 11 9 8 41 41 H 1.08994 * 110.07254 * 50.37299 * 11 9 8 42 42 H 1.08995 * 109.47163 * 299.99603 * 15 13 12 43 43 H 1.08999 * 109.46818 * 59.99861 * 15 13 12 44 44 H 0.96997 * 120.00000 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.25975 * 168.08961 * 25 12 11 46 46 H 1.09001 * 109.25803 * 287.56992 * 25 12 11 47 47 H 1.09000 * 109.87516 * 68.40685 * 26 25 12 48 48 H 1.08996 * 109.87859 * 189.40979 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1535 0.3920 0.0006 6 7 4.2210 2.6095 0.0013 7 6 3.6281 3.9673 0.0020 8 6 4.8015 4.9765 -0.1250 9 6 5.8988 4.1062 -0.7595 10 1 5.7487 4.0009 -1.8340 11 6 7.3220 4.5439 -0.4422 12 7 8.2061 3.4592 -0.9156 13 6 9.2391 3.7483 -1.7315 14 8 9.4390 4.8945 -2.0741 15 6 10.1459 2.6474 -2.2183 16 16 11.4259 3.3490 -3.2885 17 6 12.3154 1.8852 -3.7018 18 1 11.9992 0.9314 -3.3058 19 6 13.4215 1.9577 -4.5369 20 7 13.8059 3.1201 -5.0207 21 14 14.3641 0.4058 -4.9756 22 1 13.4564 -0.5465 -5.6644 23 1 15.4949 0.7507 -5.8743 24 1 14.8906 -0.2205 -3.7363 25 6 7.9705 2.0713 -0.5067 26 6 6.4872 1.6991 -0.6850 27 6 5.6666 2.7717 0.0014 28 1 6.0071 2.8823 1.0310 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.0911 4.1375 0.9351 37 1 2.9506 4.0771 -0.8449 38 1 5.1105 5.3403 0.8550 39 1 4.5338 5.8053 -0.7802 40 1 7.5539 5.4709 -0.9664 41 1 7.4405 4.6807 0.6326 42 1 10.6139 2.1579 -1.3643 43 1 9.5625 1.9181 -2.7803 44 1 14.5788 3.1708 -5.6046 45 1 8.5834 1.4078 -1.1167 46 1 8.2465 1.9535 0.5412 47 1 6.2388 1.6643 -1.7458 48 1 6.2905 0.7301 -0.2264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738371765.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = -97.502769 kcal Electronic energy + Delta-G solvation = -27550.058431 eV Core-core repulsion = 23729.787912 eV Total energy + Delta-G solvation = -3820.270520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98716 -40.68003 -39.12603 -36.86651 -35.30238 -34.60201 -33.61987 -32.82506 -31.21196 -29.38397 -28.87468 -27.68231 -25.75626 -24.38712 -23.74096 -22.41667 -21.62157 -20.69931 -20.02262 -19.42585 -18.17739 -17.67454 -17.34996 -16.98820 -16.89724 -16.86006 -16.58687 -15.89658 -15.72553 -15.44355 -15.15381 -14.67197 -14.57902 -14.49148 -14.29105 -14.22169 -13.85558 -13.59229 -13.45014 -13.18736 -13.07248 -12.90951 -12.88601 -12.80689 -12.68891 -12.55061 -12.37472 -12.22416 -11.99759 -11.78353 -11.74381 -11.61831 -11.47898 -11.14747 -10.90255 -10.65576 -10.30026 -9.79104 -9.63836 -8.69166 -8.36220 -6.14676 1.22876 1.42264 1.43075 1.50841 1.53538 1.64055 1.97248 2.02083 2.25620 2.97517 3.16925 3.26392 3.51277 3.67089 3.71312 3.77578 3.88963 3.97476 4.02880 4.10686 4.20202 4.21802 4.27469 4.35724 4.40719 4.41656 4.53336 4.60860 4.67378 4.71917 4.72701 4.75757 4.81992 4.83507 4.86173 4.94764 5.08758 5.16101 5.23741 5.25161 5.27898 5.39039 5.39623 5.47286 5.51454 6.16575 6.18638 6.54998 7.04721 7.07878 7.18337 8.72708 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.002297 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.622055 B =12186.939874 C =13449.573428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.127 4.127 4 C 0.518 3.482 5 O -0.582 6.582 6 N -0.617 5.617 7 C 0.100 3.900 8 C -0.114 4.114 9 C -0.112 4.112 10 H 0.073 0.927 11 C 0.124 3.876 12 N -0.609 5.609 13 C 0.534 3.466 14 O -0.561 6.561 15 C -0.128 4.128 16 S -0.146 6.146 17 C -0.548 4.548 18 H 0.081 0.919 19 C 0.014 3.986 20 N -0.909 5.909 21 Si 0.998 3.002 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.262 1.262 25 C 0.109 3.891 26 C -0.123 4.123 27 C 0.132 3.868 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.272 0.728 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.051 0.949 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.389 -0.593 15.445 33.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.166 4.166 4 C 0.309 3.691 5 O -0.462 6.462 6 N -0.350 5.350 7 C -0.021 4.021 8 C -0.153 4.153 9 C -0.132 4.132 10 H 0.091 0.909 11 C 0.002 3.998 12 N -0.343 5.343 13 C 0.322 3.678 14 O -0.439 6.439 15 C -0.279 4.279 16 S 0.081 5.919 17 C -0.696 4.696 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.819 3.181 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.014 4.014 26 C -0.161 4.161 27 C 0.027 3.973 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.070 0.930 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -28.744 0.563 14.871 32.368 hybrid contribution 0.873 -2.130 -0.318 2.324 sum -27.871 -1.567 14.553 31.481 Atomic orbital electron populations 1.21750 0.93629 1.02313 1.02759 1.21263 0.96759 0.94977 1.01863 1.21728 0.88687 0.99974 1.06237 1.21155 0.91535 0.81622 0.74821 1.90672 1.71378 1.32190 1.51948 1.48466 1.06599 1.07033 1.72918 1.22698 0.96490 0.78878 1.04042 1.22565 0.92613 0.97129 1.02950 1.22559 0.94705 0.95888 1.00082 0.90877 1.21676 0.87186 0.90219 1.00677 1.48279 1.28543 1.09336 1.48122 1.20087 0.81085 0.88941 0.77732 1.90667 1.72363 1.22962 1.57918 1.23417 1.00016 1.00764 1.03689 1.85495 1.31027 1.15343 1.59997 1.23156 1.16563 0.94322 1.35579 0.90137 1.26120 0.97352 1.00945 0.94654 1.70173 1.26085 1.26451 1.31867 0.85019 0.77428 0.77062 0.78582 1.18805 1.20182 1.18645 1.21908 0.96554 0.80895 1.02019 1.21826 0.93473 1.00121 1.00723 1.21388 0.81455 0.95071 0.99355 0.90225 0.91822 0.92557 0.91427 0.93338 0.92798 0.86475 0.87157 0.88286 0.89445 0.88341 0.88040 0.89855 0.88629 0.87521 0.88008 0.91930 0.89440 0.89209 0.93011 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.11 -1.47 5.22 30.59 0.16 -1.31 16 3 C -0.13 -1.31 4.95 29.85 0.15 -1.16 16 4 C 0.52 9.60 7.77 87.66 0.68 10.29 16 5 O -0.58 -15.94 14.09 -3.04 -0.04 -15.98 16 6 N -0.62 -9.34 3.28 -789.76 -2.59 -11.93 16 7 C 0.10 0.70 6.61 86.85 0.57 1.28 16 8 C -0.11 -0.93 6.54 31.63 0.21 -0.72 16 9 C -0.11 -1.85 2.85 -9.98 -0.03 -1.88 16 10 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 11 C 0.12 2.64 5.96 85.89 0.51 3.15 16 12 N -0.61 -16.85 3.00 -818.01 -2.45 -19.30 16 13 C 0.53 20.60 7.69 87.66 0.67 21.27 16 14 O -0.56 -26.18 15.22 -3.03 -0.05 -26.23 16 15 C -0.13 -5.34 4.49 71.24 0.32 -5.02 16 16 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 17 C -0.55 -31.96 9.50 67.95 0.65 -31.31 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.82 5.49 84.85 0.47 1.29 16 20 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 21 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 25 C 0.11 2.49 6.22 86.69 0.54 3.03 16 26 C -0.12 -2.74 5.16 30.42 0.16 -2.59 16 27 C 0.13 2.33 2.49 45.50 0.11 2.44 16 28 H 0.08 1.31 7.94 -2.38 -0.02 1.29 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.05 0.84 8.10 -2.38 -0.02 0.82 16 33 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 34 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.10 0.54 8.12 -2.39 -0.02 0.52 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 2.13 6.99 -2.39 -0.02 2.11 16 41 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 42 H 0.11 4.06 7.99 -2.40 -0.02 4.04 16 43 H 0.10 3.97 7.54 -2.40 -0.02 3.95 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.09 2.12 5.84 -2.39 -0.01 2.10 16 46 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 48 H 0.09 2.23 6.47 -2.39 -0.02 2.22 16 Total: -1.00 -82.20 391.94 2.83 -79.37 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.93 Total: 14.99 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.88 Total: -1.73 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -4.76 Total: -87.34 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.09 Total: -42.21 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -82.20 2.83 -79.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738371765.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.136 kcal (2) G-P(sol) polarization free energy of solvation -82.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds