Wall clock time and date at job start Sat Apr 11 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46998 * 2 1 4 4 C 1.52998 * 109.47520 * 120.00842 * 2 1 3 5 5 C 1.50695 * 109.47529 * 64.99257 * 4 2 1 6 6 O 1.21289 * 119.99893 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00338 * 180.02562 * 5 4 2 8 8 C 1.47801 * 135.00777 * 0.02562 * 7 5 4 9 9 C 1.54657 * 85.79062 * 153.82694 * 8 7 5 10 10 H 1.08998 * 114.44287 * 140.42620 * 9 8 7 11 11 C 1.53011 * 110.83524 * 270.22876 * 9 8 7 12 12 C 1.53103 * 109.44564 * 143.88760 * 11 9 8 13 13 N 1.46612 * 108.00835 * 301.02274 * 12 11 9 14 14 C 1.34784 * 119.89366 * 237.30713 * 13 12 11 15 15 O 1.21274 * 119.99897 * 179.73077 * 14 13 12 16 16 C 1.50695 * 119.99635 * 0.02562 * 14 13 12 17 17 S 1.81006 * 109.46975 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00155 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99670 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00050 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47184 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47541 * 119.99901 * 22 20 18 25 25 H 1.48497 * 109.47123 * 239.99909 * 22 20 18 26 26 C 1.45676 * 120.21690 * 57.58813 * 13 12 11 27 27 C 1.46811 * 135.01326 * 180.02562 * 7 5 4 28 28 H 1.09001 * 111.55957 * 94.46490 * 27 7 5 29 29 H 1.09004 * 109.47357 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46497 * 299.99310 * 1 2 3 31 31 H 1.09000 * 109.47267 * 59.99461 * 1 2 3 32 32 H 1.09007 * 109.46497 * 240.00690 * 2 1 3 33 33 H 1.09004 * 109.46971 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47552 * 300.00365 * 3 2 1 35 35 H 1.08998 * 109.47101 * 60.00906 * 3 2 1 36 36 H 1.09000 * 109.46844 * 304.99653 * 4 2 1 37 37 H 1.08998 * 109.47266 * 185.00196 * 4 2 1 38 38 H 1.09002 * 113.82642 * 39.61039 * 8 7 5 39 39 H 1.09004 * 113.82427 * 268.03770 * 8 7 5 40 40 H 1.08998 * 109.47535 * 23.89703 * 11 9 8 41 41 H 1.09003 * 109.48069 * 263.88301 * 11 9 8 42 42 H 1.09011 * 109.75098 * 181.39839 * 12 11 9 43 43 H 1.08993 * 109.79516 * 60.68006 * 12 11 9 44 44 H 1.09005 * 109.47403 * 300.00056 * 16 14 13 45 45 H 1.09002 * 109.47422 * 60.00295 * 16 14 13 46 46 H 0.97005 * 120.00072 * 180.02562 * 21 20 18 47 47 H 1.08998 * 108.71658 * 81.48416 * 26 13 12 48 48 H 1.09007 * 108.71542 * 199.50481 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6414 -2.1734 1.1887 6 8 1.0116 -2.5904 0.2397 7 7 1.9846 -3.0087 2.1892 8 6 2.7233 -2.8677 3.4616 9 6 1.8915 -4.0780 3.9467 10 1 2.4480 -4.7946 4.5507 11 6 0.5873 -3.6154 4.5996 12 6 -0.5303 -4.6066 4.2638 13 7 -0.6628 -4.6631 2.8048 14 6 -1.8468 -4.3800 2.2263 15 8 -1.9573 -4.4214 1.0193 16 6 -3.0316 -4.0057 3.0791 17 16 -4.4626 -3.6875 2.0174 18 6 -5.6667 -3.2851 3.2392 19 1 -5.3974 -3.2907 4.2851 20 6 -6.9612 -2.9610 2.8576 21 7 -7.2892 -2.9537 1.5829 22 14 -8.2375 -2.5337 4.1528 23 1 -7.6204 -2.6137 5.5012 24 1 -8.7387 -1.1557 3.9184 25 1 -9.3682 -3.4927 4.0688 26 6 0.4795 -5.0301 1.9786 27 6 1.7797 -4.4357 2.4669 28 1 2.6272 -5.0344 2.1331 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.6056 -0.2620 2.1369 37 1 3.1264 -0.6444 1.2950 38 1 2.5073 -1.9425 3.9960 39 1 3.7904 -3.0728 3.3763 40 1 0.3224 -2.6277 4.2224 41 1 0.7187 -3.5684 5.6806 42 1 -1.4676 -4.2686 4.7061 43 1 -0.2761 -5.5939 4.6492 44 1 -3.2609 -4.8239 3.7618 45 1 -2.7976 -3.1088 3.6526 46 1 -8.1938 -2.7268 1.3161 47 1 0.5692 -6.1163 1.9683 48 1 0.2989 -4.6871 0.9598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739691367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:40 Heat of formation + Delta-G solvation = -40.694997 kcal Electronic energy + Delta-G solvation = -28597.714121 eV Core-core repulsion = 24779.906971 eV Total energy + Delta-G solvation = -3817.807150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38791 -39.23109 -38.36139 -35.53790 -35.30932 -32.39928 -32.04411 -31.01984 -29.33546 -27.56105 -27.40277 -27.00826 -25.45150 -24.00378 -23.18505 -21.22778 -20.12247 -19.53597 -18.06319 -17.72961 -17.04369 -16.62222 -16.47187 -16.03471 -15.42012 -15.17842 -14.78196 -14.72303 -14.32044 -14.01390 -13.94689 -13.87920 -13.60150 -13.41512 -13.00383 -12.69122 -12.66078 -12.37377 -12.31440 -12.19832 -11.96649 -11.90848 -11.63654 -11.41708 -11.16420 -11.05661 -11.05168 -10.97553 -10.89282 -10.75832 -10.72880 -10.68395 -9.76321 -9.47664 -9.25988 -9.04447 -8.82529 -8.38672 -8.15844 -6.45294 -6.18191 -3.88250 2.59456 2.68441 2.99081 3.17905 3.23162 3.28343 3.32828 3.64493 3.90767 4.19731 4.23036 4.39657 4.63860 4.69686 4.74256 4.82609 4.93479 5.00463 5.02323 5.07105 5.14090 5.16676 5.19754 5.25333 5.33912 5.39882 5.43657 5.52103 5.53221 5.58791 5.61954 5.71206 5.73281 5.82521 5.90564 5.91627 5.93963 6.05641 6.14260 6.14346 6.18818 6.34886 6.65227 6.78390 7.60444 7.62292 7.65143 8.20948 8.38265 8.69494 9.26804 10.89228 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.003411 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.576428 B = 8207.894814 C = 9545.358772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C -0.146 4.146 4 C -0.128 4.128 5 C 0.533 3.467 6 O -0.515 6.515 7 N -0.643 5.643 8 C 0.101 3.899 9 C -0.115 4.115 10 H 0.100 0.900 11 C -0.118 4.118 12 C 0.108 3.892 13 N -0.613 5.613 14 C 0.531 3.469 15 O -0.505 6.505 16 C -0.148 4.148 17 S -0.059 6.059 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.105 3.895 27 C 0.133 3.867 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.267 0.733 47 H 0.066 0.934 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.603 1.663 8.064 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 C -0.204 4.204 4 C -0.168 4.168 5 C 0.323 3.677 6 O -0.389 6.389 7 N -0.381 5.381 8 C -0.022 4.022 9 C -0.134 4.134 10 H 0.118 0.882 11 C -0.156 4.156 12 C -0.016 4.016 13 N -0.349 5.349 14 C 0.318 3.682 15 O -0.378 6.378 16 C -0.299 4.299 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.019 4.019 27 C 0.029 3.971 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 24.881 1.562 5.399 25.508 hybrid contribution -0.459 0.381 2.386 2.460 sum 24.422 1.943 7.785 25.706 Atomic orbital electron populations 1.21967 0.93948 1.04151 1.01149 1.20880 0.97182 0.95061 0.96804 1.21855 1.00393 0.96002 1.02114 1.21705 1.02090 0.91912 1.01093 1.20424 0.79142 0.87723 0.80449 1.90765 1.38656 1.77580 1.31949 1.49989 1.56206 1.10273 1.21665 1.23507 0.96478 0.99264 0.82999 1.22954 0.97342 0.97769 0.95370 0.88218 1.21759 0.93357 1.00035 1.00462 1.21594 0.99827 0.99296 0.80887 1.47551 1.09936 1.71043 1.06375 1.20323 0.83120 0.76027 0.88690 1.90723 1.82940 1.49706 1.14412 1.23537 0.99112 1.03770 1.03453 1.85484 0.98844 1.89492 1.09450 1.22901 0.97095 1.54023 0.94253 0.90983 1.24984 0.97689 0.94917 0.95985 1.70035 1.19831 1.45503 1.14838 0.86133 0.80530 0.78176 0.80741 1.19640 1.20588 1.20581 1.20798 0.84313 0.98551 0.98214 1.22198 0.98134 0.83515 0.93228 0.88961 0.90211 0.93381 0.92832 0.90589 0.93003 0.92291 0.92677 0.89310 0.89540 0.89889 0.89675 0.91016 0.90068 0.88845 0.91207 0.89414 0.89578 0.92268 0.91613 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.93 37.16 0.33 -1.90 16 2 C -0.08 -0.93 2.57 -90.62 -0.23 -1.16 16 3 C -0.15 -1.30 9.19 37.15 0.34 -0.95 16 4 C -0.13 -1.31 4.95 -27.89 -0.14 -1.45 16 5 C 0.53 7.22 7.71 -10.99 -0.08 7.14 16 6 O -0.51 -9.44 13.11 5.55 0.07 -9.36 16 7 N -0.64 -6.85 3.35 -173.86 -0.58 -7.43 16 8 C 0.10 0.62 7.97 -3.01 -0.02 0.59 16 9 C -0.12 -0.77 4.39 -89.98 -0.40 -1.16 16 10 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 11 C -0.12 -0.95 5.66 -26.67 -0.15 -1.10 16 12 C 0.11 1.14 6.30 -3.93 -0.02 1.12 16 13 N -0.61 -9.22 2.98 -175.35 -0.52 -9.74 16 14 C 0.53 10.85 7.69 -10.98 -0.08 10.77 16 15 O -0.50 -12.62 15.25 5.56 0.08 -12.54 16 16 C -0.15 -3.14 4.47 36.00 0.16 -2.98 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.60 13.22 55.49 0.73 -25.86 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.11 1.44 6.05 -5.46 -0.03 1.41 16 27 C 0.13 1.30 4.22 -69.46 -0.29 1.01 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.47 5.95 -51.93 -0.31 1.16 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.96 7.96 -51.92 -0.41 0.55 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.44 7.97 -51.93 -0.41 0.02 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 1.05 5.79 -51.92 -0.30 0.75 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.70 7.84 -51.91 -0.41 1.29 16 45 H 0.09 1.70 7.73 -51.92 -0.40 1.30 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.11 2.04 5.53 -51.93 -0.29 1.75 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -38.05 392.88 -9.93 -47.97 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.97 Total: 0.13 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.43 Total: -1.81 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.37 Total: -43.03 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.16 Total: -21.90 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.05 -9.93 -47.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739691367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.278 kcal (2) G-P(sol) polarization free energy of solvation -38.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds