Wall clock time and date at job start Sat Apr 11 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47261 * 2 1 4 4 C 1.50697 * 120.00061 * 87.53398 * 3 2 1 5 5 C 1.32996 * 120.00144 * 267.53527 * 3 2 1 6 6 C 1.47099 * 119.99790 * 7.53895 * 5 3 2 7 7 O 1.21612 * 119.99888 * 6.27020 * 6 5 3 8 8 N 1.34774 * 120.00196 * 186.54225 * 6 5 3 9 9 C 1.46499 * 120.00324 * 180.02562 * 8 6 5 10 10 C 1.52997 * 110.88747 * 303.88181 * 9 8 6 11 11 C 1.55161 * 111.00348 * 180.02562 * 9 8 6 12 12 C 1.54319 * 102.94282 * 277.42765 * 11 9 8 13 13 N 1.47032 * 107.27170 * 337.80840 * 12 11 9 14 14 C 1.34775 * 125.64751 * 178.98761 * 13 12 11 15 15 O 1.21283 * 119.99879 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00245 * 359.97438 * 14 13 12 17 17 S 1.80995 * 109.47246 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00051 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00002 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00122 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99921 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46891 * 59.99942 * 22 20 18 24 24 H 1.48505 * 109.46872 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46993 * 299.99985 * 22 20 18 26 26 C 1.47426 * 108.69861 * 358.94082 * 13 12 11 27 27 H 1.08991 * 109.47366 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47299 * 300.00265 * 1 2 3 29 29 H 1.09002 * 109.46843 * 59.99743 * 1 2 3 30 30 H 1.08997 * 109.46873 * 239.99866 * 2 1 3 31 31 H 1.09002 * 109.46843 * 120.00257 * 2 1 3 32 32 H 1.08999 * 109.47425 * 270.00033 * 4 3 2 33 33 H 1.08997 * 109.47209 * 29.99775 * 4 3 2 34 34 H 1.09005 * 109.47269 * 150.00269 * 4 3 2 35 35 H 1.07999 * 119.99942 * 187.54648 * 5 3 2 36 36 H 0.97000 * 119.99924 * 0.02562 * 8 6 5 37 37 H 1.09005 * 109.47275 * 59.29666 * 10 9 8 38 38 H 1.08994 * 109.47182 * 179.29828 * 10 9 8 39 39 H 1.08997 * 109.47341 * 299.30151 * 10 9 8 40 40 H 1.08995 * 110.72287 * 35.79133 * 11 9 8 41 41 H 1.09006 * 110.71418 * 159.06552 * 11 9 8 42 42 H 1.08995 * 109.88414 * 97.22952 * 12 11 9 43 43 H 1.09001 * 109.88474 * 218.39728 * 12 11 9 44 44 H 1.09004 * 109.47214 * 300.00379 * 16 14 13 45 45 H 1.08999 * 109.47262 * 60.00032 * 16 14 13 46 46 H 0.97001 * 120.00149 * 180.02562 * 21 20 18 47 47 H 1.09004 * 110.36681 * 265.28467 * 26 13 12 48 48 H 1.09004 * 110.36182 * 142.97195 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2306 2.1499 1.3039 5 6 2.3008 2.0312 -1.1507 6 6 1.9527 1.3842 -2.4251 7 8 1.3186 0.3465 -2.4270 8 7 2.3414 1.9386 -3.5905 9 6 1.9943 1.2945 -4.8597 10 6 2.4999 -0.1490 -4.8952 11 6 2.5435 2.1054 -6.0632 12 6 1.4737 3.2000 -6.2596 13 7 0.2285 2.7075 -5.6523 14 6 -0.9382 3.3798 -5.5976 15 8 -1.9058 2.8734 -5.0701 16 6 -1.0407 4.7609 -6.1917 17 16 -2.7204 5.3942 -5.9604 18 6 -2.5598 6.9737 -6.7248 19 1 -1.6141 7.2735 -7.1516 20 6 -3.6488 7.8326 -6.7783 21 7 -4.8013 7.4675 -6.2577 22 14 -3.4788 9.5068 -7.5893 23 1 -3.0905 9.3306 -9.0117 24 1 -4.7759 10.2262 -7.5162 25 1 -2.4351 10.2942 -6.8851 26 6 0.4675 1.3559 -5.1142 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3105 2.6679 1.5741 33 1 2.4874 1.4343 2.0849 34 1 3.0374 2.8749 1.1958 35 1 2.7743 3.0018 -1.1494 36 1 2.8509 2.7639 -3.5889 37 1 2.0557 -0.7099 -4.0728 38 1 2.2190 -0.6093 -5.8424 39 1 3.5853 -0.1564 -4.7954 40 1 3.5092 2.5490 -5.8209 41 1 2.6187 1.4760 -6.9501 42 1 1.7888 4.1192 -5.7657 43 1 1.3205 3.3821 -7.3233 44 1 -0.3314 5.4235 -5.6956 45 1 -0.8123 4.7162 -7.2566 46 1 -5.5625 8.0676 -6.2955 47 1 0.1736 0.6001 -5.8427 48 1 -0.0786 1.2171 -4.1811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739713068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:48 Heat of formation + Delta-G solvation = -56.871782 kcal Electronic energy + Delta-G solvation = -27761.747426 eV Core-core repulsion = 23943.238799 eV Total energy + Delta-G solvation = -3818.508628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80431 -39.33979 -37.66596 -35.99225 -34.21445 -32.42510 -32.01588 -30.77282 -29.82353 -29.42116 -28.09831 -26.12476 -25.39664 -23.99399 -23.25446 -21.96542 -19.91174 -19.42526 -18.79002 -17.68942 -17.11468 -16.66070 -16.38112 -15.81216 -15.06131 -14.90359 -14.81352 -14.76895 -14.42028 -14.02169 -13.92836 -13.82882 -13.63521 -13.02926 -12.95765 -12.85146 -12.78413 -12.62326 -12.58714 -12.40152 -12.32903 -12.04210 -11.79586 -11.67980 -11.54532 -11.25481 -11.05892 -11.03966 -11.02674 -10.82214 -10.76495 -9.82400 -9.52699 -9.36748 -9.35590 -9.09514 -9.05521 -8.42654 -8.22297 -6.49428 -6.20782 -3.91571 1.18679 2.93218 2.98462 3.10954 3.16828 3.23202 3.25893 3.29190 3.63120 4.05399 4.20927 4.34643 4.52077 4.53503 4.62566 4.93004 4.95363 5.05221 5.13720 5.14001 5.19599 5.21828 5.27648 5.36900 5.42314 5.46256 5.51697 5.52309 5.54707 5.58963 5.61388 5.63472 5.72304 5.84730 5.91848 5.96021 6.01432 6.11222 6.13778 6.21808 6.31965 6.42296 6.45505 6.48790 7.39844 7.59274 7.70965 8.16248 8.35342 8.60455 9.23979 10.86587 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.002657 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.580073 B =10537.110622 C =11542.705938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C -0.024 4.024 4 C -0.128 4.128 5 C -0.236 4.236 6 C 0.550 3.450 7 O -0.528 6.528 8 N -0.714 5.714 9 C 0.163 3.837 10 C -0.154 4.154 11 C -0.132 4.132 12 C 0.100 3.900 13 N -0.625 5.625 14 C 0.547 3.453 15 O -0.513 6.513 16 C -0.145 4.145 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.105 3.895 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.400 0.600 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.269 0.731 47 H 0.072 0.928 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.156 -13.280 8.054 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 C -0.026 4.026 4 C -0.184 4.184 5 C -0.257 4.257 6 C 0.341 3.659 7 O -0.408 6.408 8 N -0.366 5.366 9 C 0.076 3.924 10 C -0.213 4.213 11 C -0.170 4.170 12 C -0.023 4.023 13 N -0.362 5.362 14 C 0.336 3.664 15 O -0.387 6.387 16 C -0.296 4.296 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.019 4.019 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.971 -14.662 8.855 26.310 hybrid contribution 1.582 2.390 -1.237 3.122 sum 21.552 -12.271 7.618 25.944 Atomic orbital electron populations 1.21531 0.93938 1.01730 1.01794 1.21047 0.97331 0.92358 1.03417 1.22581 0.89779 0.95798 0.94445 1.21020 1.02821 1.00195 0.94400 1.22327 1.09224 1.02148 0.91993 1.18499 0.79023 0.84314 0.84060 1.90689 1.39561 1.23338 1.87166 1.45814 1.57650 1.28160 1.04938 1.21358 0.94290 0.93617 0.83134 1.22051 1.01102 0.94229 1.03900 1.22991 0.98510 0.97489 0.98038 1.21994 0.84240 0.97162 0.98921 1.48472 1.10519 1.17394 1.59844 1.20012 0.80815 0.86669 0.78932 1.90720 1.35582 1.69034 1.43377 1.23496 1.07957 0.94999 1.03139 1.85434 1.03232 1.17651 1.77035 1.22815 1.00062 1.01787 1.43720 0.91031 1.24992 0.94465 0.98797 0.95312 1.70010 1.01130 1.36727 1.42386 0.86228 0.77596 0.82051 0.79637 1.19943 1.20797 1.19950 1.22525 0.94575 0.84475 1.00343 0.92720 0.93743 0.91559 0.87831 0.92395 0.90027 0.91177 0.91210 0.85852 0.76575 0.89505 0.91509 0.92278 0.89414 0.88795 0.91369 0.90963 0.89485 0.89379 0.92120 0.91003 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.45 37.16 0.35 -1.12 16 2 C -0.10 -1.03 5.32 -27.88 -0.15 -1.18 16 3 C -0.02 -0.22 5.36 -101.17 -0.54 -0.76 16 4 C -0.13 -0.86 10.05 36.00 0.36 -0.49 16 5 C -0.24 -2.25 9.63 -37.81 -0.36 -2.61 16 6 C 0.55 6.18 6.98 -12.67 -0.09 6.09 16 7 O -0.53 -7.09 8.53 5.27 0.04 -7.04 16 8 N -0.71 -6.65 5.18 -46.79 -0.24 -6.89 16 9 C 0.16 1.55 0.82 -129.67 -0.11 1.44 16 10 C -0.15 -1.33 8.52 37.16 0.32 -1.01 16 11 C -0.13 -0.95 5.97 -24.90 -0.15 -1.10 16 12 C 0.10 1.03 6.48 -3.06 -0.02 1.01 16 13 N -0.62 -9.35 3.33 -170.52 -0.57 -9.92 16 14 C 0.55 11.05 7.87 -10.99 -0.09 10.96 16 15 O -0.51 -12.59 16.12 5.55 0.09 -12.50 16 16 C -0.15 -3.05 5.35 36.00 0.19 -2.86 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 22 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 26 C 0.10 1.43 5.84 -2.53 -0.01 1.41 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.92 6.92 -51.93 -0.36 0.56 16 30 H 0.10 1.18 5.56 -51.93 -0.29 0.89 16 31 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.07 0.39 8.06 -51.93 -0.42 -0.03 16 35 H 0.12 0.92 8.04 -52.49 -0.42 0.50 16 36 H 0.40 2.83 8.49 -40.82 -0.35 2.49 16 37 H 0.09 0.94 5.99 -51.93 -0.31 0.63 16 38 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.44 8.09 -51.93 -0.42 0.02 16 41 H 0.09 0.57 8.04 -51.93 -0.42 0.15 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 45 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 48 H 0.09 1.51 6.77 -51.93 -0.35 1.16 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -36.10 399.94 -9.19 -45.29 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.94 Total: 1.44 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.10 Total: -3.29 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.08 Total: -42.47 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.13 Total: -19.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.10 -9.19 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739713068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.584 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds