Wall clock time and date at job start Sat Apr 11 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47261 * 2 1 4 4 C 1.50697 * 120.00061 * 87.53398 * 3 2 1 5 5 C 1.32996 * 120.00144 * 267.53527 * 3 2 1 6 6 C 1.47099 * 119.99790 * 7.53895 * 5 3 2 7 7 O 1.21612 * 119.99888 * 6.27020 * 6 5 3 8 8 N 1.34774 * 120.00196 * 186.54225 * 6 5 3 9 9 C 1.46499 * 120.00324 * 180.02562 * 8 6 5 10 10 C 1.52997 * 110.88747 * 303.88181 * 9 8 6 11 11 C 1.55161 * 111.00348 * 180.02562 * 9 8 6 12 12 C 1.54319 * 102.94282 * 277.42765 * 11 9 8 13 13 N 1.47032 * 107.27170 * 337.80840 * 12 11 9 14 14 C 1.34775 * 125.64751 * 178.98761 * 13 12 11 15 15 O 1.21283 * 119.99879 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00245 * 359.97438 * 14 13 12 17 17 S 1.80995 * 109.47246 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00051 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00002 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00122 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99921 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46891 * 59.99942 * 22 20 18 24 24 H 1.48505 * 109.46872 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46993 * 299.99985 * 22 20 18 26 26 C 1.47426 * 108.69861 * 358.94082 * 13 12 11 27 27 H 1.08991 * 109.47366 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47299 * 300.00265 * 1 2 3 29 29 H 1.09002 * 109.46843 * 59.99743 * 1 2 3 30 30 H 1.08997 * 109.46873 * 239.99866 * 2 1 3 31 31 H 1.09002 * 109.46843 * 120.00257 * 2 1 3 32 32 H 1.08999 * 109.47425 * 270.00033 * 4 3 2 33 33 H 1.08997 * 109.47209 * 29.99775 * 4 3 2 34 34 H 1.09005 * 109.47269 * 150.00269 * 4 3 2 35 35 H 1.07999 * 119.99942 * 187.54648 * 5 3 2 36 36 H 0.97000 * 119.99924 * 0.02562 * 8 6 5 37 37 H 1.09005 * 109.47275 * 59.29666 * 10 9 8 38 38 H 1.08994 * 109.47182 * 179.29828 * 10 9 8 39 39 H 1.08997 * 109.47341 * 299.30151 * 10 9 8 40 40 H 1.08995 * 110.72287 * 35.79133 * 11 9 8 41 41 H 1.09006 * 110.71418 * 159.06552 * 11 9 8 42 42 H 1.08995 * 109.88414 * 97.22952 * 12 11 9 43 43 H 1.09001 * 109.88474 * 218.39728 * 12 11 9 44 44 H 1.09004 * 109.47214 * 300.00379 * 16 14 13 45 45 H 1.08999 * 109.47262 * 60.00032 * 16 14 13 46 46 H 0.97001 * 120.00149 * 180.02562 * 21 20 18 47 47 H 1.09004 * 110.36681 * 265.28467 * 26 13 12 48 48 H 1.09004 * 110.36182 * 142.97195 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2306 2.1499 1.3039 5 6 2.3008 2.0312 -1.1507 6 6 1.9527 1.3842 -2.4251 7 8 1.3186 0.3465 -2.4270 8 7 2.3414 1.9386 -3.5905 9 6 1.9943 1.2945 -4.8597 10 6 2.4999 -0.1490 -4.8952 11 6 2.5435 2.1054 -6.0632 12 6 1.4737 3.2000 -6.2596 13 7 0.2285 2.7075 -5.6523 14 6 -0.9382 3.3798 -5.5976 15 8 -1.9058 2.8734 -5.0701 16 6 -1.0407 4.7609 -6.1917 17 16 -2.7204 5.3942 -5.9604 18 6 -2.5598 6.9737 -6.7248 19 1 -1.6141 7.2735 -7.1516 20 6 -3.6488 7.8326 -6.7783 21 7 -4.8013 7.4675 -6.2577 22 14 -3.4788 9.5068 -7.5893 23 1 -3.0905 9.3306 -9.0117 24 1 -4.7759 10.2262 -7.5162 25 1 -2.4351 10.2942 -6.8851 26 6 0.4675 1.3559 -5.1142 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3105 2.6679 1.5741 33 1 2.4874 1.4343 2.0849 34 1 3.0374 2.8749 1.1958 35 1 2.7743 3.0018 -1.1494 36 1 2.8509 2.7639 -3.5889 37 1 2.0557 -0.7099 -4.0728 38 1 2.2190 -0.6093 -5.8424 39 1 3.5853 -0.1564 -4.7954 40 1 3.5092 2.5490 -5.8209 41 1 2.6187 1.4760 -6.9501 42 1 1.7888 4.1192 -5.7657 43 1 1.3205 3.3821 -7.3233 44 1 -0.3314 5.4235 -5.6956 45 1 -0.8123 4.7162 -7.2566 46 1 -5.5625 8.0676 -6.2955 47 1 0.1736 0.6001 -5.8427 48 1 -0.0786 1.2171 -4.1811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739713068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:47 Heat of formation + Delta-G solvation = -81.496897 kcal Electronic energy + Delta-G solvation = -27762.815251 eV Core-core repulsion = 23943.238799 eV Total energy + Delta-G solvation = -3819.576453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75185 -40.52091 -38.86131 -36.82441 -35.24587 -34.59825 -32.98531 -31.62762 -30.94328 -30.63703 -28.73312 -27.78429 -27.02391 -24.84535 -24.21226 -22.76254 -20.94558 -20.60355 -19.84360 -19.36507 -18.08561 -17.88451 -17.55397 -16.97358 -16.89102 -16.21005 -16.00036 -15.75228 -15.67143 -15.37017 -15.06405 -14.63610 -14.52731 -14.37993 -14.02218 -13.90806 -13.73652 -13.66817 -13.42138 -13.34878 -13.18971 -13.17662 -13.08850 -12.86748 -12.83242 -12.64828 -12.42607 -12.37296 -11.99511 -11.83378 -11.77004 -11.65160 -11.13722 -11.02811 -10.35390 -10.29712 -10.15650 -9.93135 -9.62600 -8.70813 -8.35305 -6.15152 0.43967 1.21886 1.43763 1.44020 1.52882 1.54498 2.05566 2.23827 2.26402 2.36176 2.98663 3.16783 3.34739 3.52558 3.80137 3.84287 3.87989 3.90755 4.17501 4.23257 4.27799 4.33955 4.40418 4.45608 4.51446 4.56339 4.64572 4.68796 4.69718 4.73037 4.80620 4.82709 4.85245 4.96580 4.99315 5.07048 5.08630 5.23275 5.30076 5.34953 5.39532 5.39895 5.53557 5.67519 5.71094 6.18387 6.36104 6.67297 7.05116 7.08324 7.37542 8.73899 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.002657 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.580073 B =10537.110622 C =11542.705938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 C -0.028 4.028 4 C -0.125 4.125 5 C -0.247 4.247 6 C 0.538 3.462 7 O -0.558 6.558 8 N -0.707 5.707 9 C 0.170 3.830 10 C -0.148 4.148 11 C -0.114 4.114 12 C 0.086 3.914 13 N -0.613 5.613 14 C 0.542 3.458 15 O -0.573 6.573 16 C -0.115 4.115 17 S -0.157 6.157 18 C -0.545 4.545 19 H 0.085 0.915 20 C 0.012 3.988 21 N -0.913 5.913 22 Si 1.001 2.999 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.260 1.260 26 C 0.100 3.900 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.413 0.587 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.271 0.729 47 H 0.074 0.926 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.179 -11.890 7.123 29.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.140 4.140 3 C -0.030 4.030 4 C -0.181 4.181 5 C -0.268 4.268 6 C 0.329 3.671 7 O -0.439 6.439 8 N -0.359 5.359 9 C 0.082 3.918 10 C -0.206 4.206 11 C -0.151 4.151 12 C -0.036 4.036 13 N -0.347 5.347 14 C 0.330 3.670 15 O -0.452 6.452 16 C -0.266 4.266 17 S 0.070 5.930 18 C -0.693 4.693 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.184 1.184 26 C -0.024 4.024 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.164 0.836 36 H 0.250 0.750 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 24.085 -13.272 7.904 28.613 hybrid contribution 0.385 1.813 -0.921 2.070 sum 24.470 -11.459 6.983 27.908 Atomic orbital electron populations 1.21464 0.95242 1.01413 1.00447 1.20981 0.96108 0.93401 1.03511 1.22828 0.89082 0.95407 0.95682 1.21056 1.03285 1.00588 0.93217 1.22529 1.09872 1.03094 0.91294 1.18948 0.78757 0.84177 0.85225 1.90694 1.40772 1.24742 1.87693 1.45774 1.57201 1.28525 1.04414 1.21345 0.91067 0.95050 0.84308 1.21986 1.02052 0.93062 1.03503 1.23038 0.98638 0.96195 0.97276 1.22461 0.82691 0.98927 0.99496 1.48409 1.10477 1.17490 1.58371 1.19897 0.81723 0.86613 0.78748 1.90696 1.38116 1.70180 1.46204 1.23265 1.03080 0.95546 1.04674 1.85696 1.10114 1.19291 1.77858 1.23150 1.00837 1.01579 1.43687 0.89714 1.26181 0.93821 1.03534 0.95714 1.70192 1.02209 1.38549 1.43964 0.84969 0.77934 0.75990 0.78876 1.18524 1.20472 1.18431 1.22657 0.97654 0.83712 0.98359 0.92607 0.92674 0.95101 0.89606 0.90363 0.90197 0.89852 0.89634 0.83554 0.75002 0.92285 0.90203 0.90195 0.85768 0.86723 0.89909 0.89591 0.87428 0.87323 0.91979 0.90748 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.45 71.98 0.68 -2.35 16 2 C -0.10 -2.06 5.32 29.85 0.16 -1.90 16 3 C -0.03 -0.49 5.36 -17.62 -0.09 -0.59 16 4 C -0.13 -1.45 10.05 71.24 0.72 -0.73 16 5 C -0.25 -4.51 9.63 23.43 0.23 -4.29 16 6 C 0.54 12.12 6.98 86.57 0.60 12.73 16 7 O -0.56 -15.90 8.53 -4.07 -0.03 -15.93 16 8 N -0.71 -12.07 5.18 -420.21 -2.18 -14.25 16 9 C 0.17 2.90 0.82 4.99 0.00 2.90 16 10 C -0.15 -2.28 8.52 71.98 0.61 -1.66 16 11 C -0.11 -1.12 5.97 31.78 0.19 -0.93 16 12 C 0.09 1.47 6.48 86.73 0.56 2.03 16 13 N -0.61 -17.93 3.33 -811.79 -2.70 -20.63 16 14 C 0.54 22.31 7.87 87.66 0.69 23.00 16 15 O -0.57 -29.85 16.12 -3.04 -0.05 -29.90 16 16 C -0.11 -4.77 5.35 71.23 0.38 -4.39 16 17 S -0.16 -9.00 20.57 -56.49 -1.16 -10.17 16 18 C -0.54 -31.40 9.50 67.95 0.65 -30.75 16 19 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 20 C 0.01 0.69 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.87 13.22 21.65 0.29 -56.59 16 22 Si 1.00 43.56 29.55 68.60 2.03 45.58 16 23 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 C 0.10 2.76 5.84 86.85 0.51 3.26 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.03 0.93 6.92 -2.39 -0.02 0.92 16 30 H 0.09 2.06 5.56 -2.39 -0.01 2.04 16 31 H 0.08 1.21 8.07 -2.39 -0.02 1.20 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.08 0.75 8.06 -2.39 -0.02 0.73 16 34 H 0.08 0.73 8.06 -2.38 -0.02 0.71 16 35 H 0.15 1.88 8.04 -2.91 -0.02 1.86 16 36 H 0.41 4.67 8.49 -92.71 -0.79 3.89 16 37 H 0.06 1.29 5.99 -2.38 -0.01 1.27 16 38 H 0.08 1.01 8.13 -2.39 -0.02 0.99 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.12 0.47 8.09 -2.39 -0.02 0.45 16 41 H 0.11 0.78 8.04 -2.38 -0.02 0.76 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 45 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 46 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 47 H 0.07 1.99 8.03 -2.39 -0.02 1.97 16 48 H 0.05 1.69 6.77 -2.38 -0.02 1.67 16 Total: -1.00 -85.60 399.94 2.71 -82.89 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.17 Total: 21.50 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.35 Total: -2.51 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -4.59 Total: -91.46 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.08 Total: -45.83 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.17 kcal Total: -85.60 2.71 -82.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739713068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.392 kcal (2) G-P(sol) polarization free energy of solvation -85.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds