Wall clock time and date at job start Sat Apr 11 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 109.46653 * 2 1 4 4 C 1.50694 * 119.99959 * 274.99865 * 3 2 1 5 5 C 1.32990 * 120.00077 * 95.00679 * 3 2 1 6 6 C 1.47106 * 120.00206 * 172.08767 * 5 3 2 7 7 O 1.21611 * 119.99477 * 0.80508 * 6 5 3 8 8 N 1.34777 * 120.00006 * 180.80417 * 6 5 3 9 9 C 1.47064 * 136.05541 * 355.09332 * 8 6 5 10 10 C 1.53497 * 87.98680 * 207.15722 * 9 8 6 11 11 C 1.47056 * 136.05810 * 175.14627 * 8 6 5 12 12 H 1.09001 * 113.46727 * 267.68075 * 11 8 6 13 13 C 1.52999 * 113.46975 * 38.05962 * 11 8 6 14 14 N 1.46498 * 109.47544 * 184.54179 * 13 11 8 15 15 C 1.46502 * 119.99797 * 274.23287 * 14 13 11 16 16 C 1.34774 * 119.99988 * 94.23340 * 14 13 11 17 17 O 1.21277 * 119.99909 * 354.35864 * 16 14 13 18 18 C 1.50695 * 119.99905 * 174.36219 * 16 14 13 19 19 S 1.81003 * 109.47145 * 179.97438 * 18 16 14 20 20 C 1.76203 * 100.00087 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99877 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00009 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99867 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99897 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47079 * 89.99841 * 24 22 20 26 26 H 1.48502 * 109.46848 * 209.99754 * 24 22 20 27 27 H 1.48495 * 109.47323 * 329.99620 * 24 22 20 28 28 H 1.08998 * 109.46876 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46619 * 299.99595 * 1 2 3 30 30 H 1.08992 * 109.47181 * 59.99648 * 1 2 3 31 31 H 1.09001 * 109.46619 * 240.00405 * 2 1 3 32 32 H 1.08997 * 109.47136 * 119.99895 * 2 1 3 33 33 H 1.09007 * 109.47719 * 264.16200 * 4 3 2 34 34 H 1.09004 * 109.47322 * 24.16359 * 4 3 2 35 35 H 1.08998 * 109.47415 * 144.15970 * 4 3 2 36 36 H 1.08004 * 120.00013 * 352.09060 * 5 3 2 37 37 H 1.09006 * 113.47289 * 321.93686 * 9 8 6 38 38 H 1.09001 * 113.46812 * 92.32130 * 9 8 6 39 39 H 1.08998 * 114.20776 * 220.35315 * 10 9 8 40 40 H 1.08998 * 114.20775 * 87.51265 * 10 9 8 41 41 H 1.09004 * 109.46734 * 64.54363 * 13 11 8 42 42 H 1.08996 * 109.47625 * 304.54476 * 13 11 8 43 43 H 1.09000 * 109.47649 * 269.99856 * 15 14 13 44 44 H 1.09001 * 109.47323 * 30.00232 * 15 14 13 45 45 H 1.09009 * 109.46845 * 149.99996 * 15 14 13 46 46 H 1.08998 * 109.47580 * 299.99990 * 18 16 14 47 47 H 1.09004 * 109.47459 * 60.00214 * 18 16 14 48 48 H 0.97003 * 120.00096 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1762 2.1692 -1.3001 5 6 2.3487 2.0143 1.1473 6 6 3.0006 3.3330 1.1381 7 8 3.2370 3.8870 0.0816 8 7 3.3359 3.9271 2.3005 9 6 3.1468 3.6389 3.7301 10 6 3.2222 5.1500 3.9893 11 6 4.0510 5.1493 2.6972 12 1 5.1168 4.9938 2.8643 13 6 3.7633 6.3459 1.7882 14 7 4.5978 7.4795 2.1942 15 6 4.1447 8.3785 3.2585 16 6 5.7823 7.6953 1.5886 17 8 6.2049 6.8956 0.7807 18 6 6.5817 8.9303 1.9154 19 16 8.1113 8.9325 0.9477 20 6 8.8281 10.4400 1.5118 21 1 8.3121 11.0422 2.2450 22 6 10.0554 10.8542 1.0132 23 7 10.6841 10.1206 0.1193 24 14 10.8150 12.4528 1.6107 25 1 11.6675 12.1830 2.7962 26 1 11.6440 13.0418 0.5286 27 1 9.7373 13.4044 1.9823 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 3.2056 2.0941 -1.6507 34 1 1.5066 1.7373 -2.0440 35 1 1.9204 3.2175 -1.1462 36 1 2.1270 1.5281 2.0859 37 1 2.1729 3.2070 3.9608 38 1 3.9712 3.0800 4.1730 39 1 3.7857 5.4228 4.8815 40 1 2.2657 5.6659 3.9063 41 1 2.7118 6.6207 1.8713 42 1 3.9889 6.0803 0.7555 43 1 3.5671 9.1942 2.8238 44 1 3.5207 7.8252 3.9604 45 1 5.0093 8.7849 3.7834 46 1 5.9963 9.8170 1.6723 47 1 6.8245 8.9353 2.9780 48 1 11.5420 10.4098 -0.2290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739775542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:06 Heat of formation + Delta-G solvation = -15.730443 kcal Electronic energy + Delta-G solvation = -26947.892006 eV Core-core repulsion = 23131.167401 eV Total energy + Delta-G solvation = -3816.724605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82865 -39.26532 -38.39052 -36.17817 -35.18512 -32.40381 -31.44044 -30.69563 -29.99508 -28.12940 -27.51779 -26.29289 -25.44960 -24.49981 -23.30107 -22.48667 -19.74712 -19.19316 -18.35983 -17.62946 -17.31599 -16.60012 -16.26863 -15.92843 -15.39207 -15.14941 -14.78723 -14.78240 -14.57342 -14.36442 -13.90179 -13.65030 -13.36616 -13.18451 -13.09001 -12.90966 -12.72716 -12.71244 -12.52230 -12.41024 -12.23650 -12.06069 -11.89415 -11.78306 -11.72201 -11.56425 -11.28627 -11.04665 -10.99915 -10.81256 -10.70619 -9.78115 -9.56918 -9.37595 -9.28290 -9.04223 -8.85167 -8.43432 -8.18502 -6.46875 -6.18830 -3.89285 1.16513 2.54360 3.05424 3.09806 3.21044 3.23770 3.29426 3.33279 3.67718 4.02515 4.19702 4.22777 4.48034 4.64077 4.70872 4.80381 4.84271 4.87682 4.93026 5.05820 5.11031 5.15052 5.15984 5.17604 5.18660 5.35323 5.40111 5.41929 5.47265 5.48826 5.54362 5.56445 5.66321 5.68247 5.70750 5.78271 5.92358 5.94425 5.97967 6.15043 6.17152 6.30521 6.37258 6.68545 7.57745 7.62074 7.63369 8.13847 8.37672 8.62052 9.26142 10.88560 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021284 B = 0.002072 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.243853 B =13508.189492 C =14380.977141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.026 4.026 4 C -0.129 4.129 5 C -0.228 4.228 6 C 0.571 3.429 7 O -0.527 6.527 8 N -0.642 5.642 9 C 0.102 3.898 10 C -0.154 4.154 11 C 0.123 3.877 12 H 0.097 0.903 13 C 0.114 3.886 14 N -0.623 5.623 15 C 0.080 3.920 16 C 0.530 3.470 17 O -0.508 6.508 18 C -0.149 4.149 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.237 -16.950 9.443 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.028 4.028 4 C -0.185 4.185 5 C -0.249 4.249 6 C 0.365 3.635 7 O -0.406 6.406 8 N -0.378 5.378 9 C -0.021 4.021 10 C -0.192 4.192 11 C 0.018 3.982 12 H 0.115 0.885 13 C -0.010 4.010 14 N -0.360 5.360 15 C -0.063 4.063 16 C 0.317 3.683 17 O -0.381 6.381 18 C -0.299 4.299 19 S 0.164 5.836 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.384 -17.964 7.335 29.623 hybrid contribution 0.057 1.843 1.616 2.452 sum -22.326 -16.121 8.951 28.956 Atomic orbital electron populations 1.21720 0.94196 1.02035 1.02456 1.20779 0.96682 0.92625 1.03386 1.22590 0.89919 0.94727 0.95569 1.21230 1.02489 1.01698 0.93119 1.22239 1.07615 0.96354 0.98704 1.18144 0.78944 0.84887 0.81572 1.90807 1.55029 1.65613 1.29110 1.49636 1.57210 1.25620 1.05372 1.22917 1.02020 0.97155 0.80016 1.23578 1.01330 0.96066 0.98188 1.23113 0.97658 0.85001 0.92383 0.88516 1.21551 0.94030 0.84554 1.00840 1.47803 1.20388 1.28949 1.38861 1.21787 1.00810 0.93698 0.90017 1.20404 0.80278 0.87258 0.80326 1.90732 1.67933 1.46240 1.33232 1.23554 1.03402 0.97470 1.05509 1.85452 1.12808 1.31044 1.54248 1.22861 1.07964 1.08112 1.29363 0.90954 1.24994 0.96005 0.97899 0.94716 1.70023 1.15256 1.37507 1.27459 0.86171 0.79016 0.81904 0.78420 1.20297 1.20767 1.19705 0.92111 0.92456 0.92241 0.90208 0.90756 0.90205 0.92689 0.88651 0.86072 0.90398 0.89749 0.89041 0.88636 0.90737 0.87935 0.92761 0.91379 0.90648 0.89242 0.89290 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.90 37.16 0.37 -0.42 16 2 C -0.10 -0.62 6.08 -27.88 -0.17 -0.79 16 3 C -0.03 -0.24 5.36 -101.17 -0.54 -0.79 16 4 C -0.13 -1.37 8.51 36.00 0.31 -1.07 16 5 C -0.23 -2.28 9.44 -37.80 -0.36 -2.63 16 6 C 0.57 7.61 7.86 -12.66 -0.10 7.51 16 7 O -0.53 -8.96 12.52 5.27 0.07 -8.89 16 8 N -0.64 -7.32 3.57 -178.87 -0.64 -7.96 16 9 C 0.10 0.71 8.33 -8.52 -0.07 0.64 16 10 C -0.15 -1.08 7.11 -26.22 -0.19 -1.27 16 11 C 0.12 1.45 4.29 -72.41 -0.31 1.14 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 13 C 0.11 1.59 5.14 -4.04 -0.02 1.57 16 14 N -0.62 -9.14 2.87 -181.57 -0.52 -9.66 16 15 C 0.08 0.82 10.22 59.85 0.61 1.43 16 16 C 0.53 10.53 7.67 -10.99 -0.08 10.44 16 17 O -0.51 -12.38 15.43 5.56 0.09 -12.29 16 18 C -0.15 -3.09 4.84 36.00 0.17 -2.92 16 19 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 20 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.52 13.22 55.49 0.73 -25.78 16 24 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.41 8.04 -51.93 -0.42 -0.01 16 33 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.10 1.23 6.00 -51.93 -0.31 0.92 16 36 H 0.12 0.91 7.99 -52.48 -0.42 0.49 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.59 7.94 -51.93 -0.41 0.17 16 41 H 0.07 0.87 7.85 -51.93 -0.41 0.47 16 42 H 0.10 1.88 6.26 -51.93 -0.33 1.56 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.49 7.14 -51.93 -0.37 0.12 16 45 H 0.07 0.77 6.48 -51.92 -0.34 0.43 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 47 H 0.09 1.67 7.23 -51.91 -0.38 1.30 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -37.41 407.45 -9.54 -46.95 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.99 Total: -0.88 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.18 Total: -0.25 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.43 Total: -43.40 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.15 Total: -21.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.41 -9.54 -46.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739775542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.217 kcal (2) G-P(sol) polarization free energy of solvation -37.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds