Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47105 * 2 1 4 4 C 1.50698 * 119.99992 * 87.82039 * 3 2 1 5 5 C 1.32994 * 119.99608 * 267.82897 * 3 2 1 6 6 C 1.47094 * 120.00419 * 7.69505 * 5 3 2 7 7 O 1.21615 * 120.00084 * 6.00671 * 6 5 3 8 8 N 1.34773 * 120.00145 * 186.00492 * 6 5 3 9 9 C 1.47074 * 136.05836 * 355.06974 * 8 6 5 10 10 C 1.53499 * 87.98420 * 207.08712 * 9 8 6 11 11 C 1.47069 * 136.05934 * 175.02007 * 8 6 5 12 12 H 1.08999 * 113.46920 * 267.75170 * 11 8 6 13 13 C 1.52998 * 113.46580 * 38.13526 * 11 8 6 14 14 N 1.46506 * 109.46966 * 185.66503 * 13 11 8 15 15 C 1.46502 * 119.99447 * 274.79535 * 14 13 11 16 16 C 1.34772 * 120.00250 * 94.79856 * 14 13 11 17 17 O 1.21276 * 120.00261 * 354.92524 * 16 14 13 18 18 C 1.50702 * 119.99854 * 174.93203 * 16 14 13 19 19 S 1.81002 * 109.46780 * 179.97438 * 18 16 14 20 20 C 1.76204 * 99.99819 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99912 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00174 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99839 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47212 * 60.00617 * 24 22 20 26 26 H 1.48502 * 109.47318 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47305 * 300.00579 * 24 22 20 28 28 H 1.08995 * 109.47070 * 299.99647 * 1 2 3 29 29 H 1.08993 * 109.47195 * 60.00086 * 1 2 3 30 30 H 1.09003 * 109.46596 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47070 * 240.00353 * 2 1 3 32 32 H 1.09001 * 109.46916 * 119.99925 * 2 1 3 33 33 H 1.08992 * 109.47406 * 270.00624 * 4 3 2 34 34 H 1.09000 * 109.47054 * 30.00628 * 4 3 2 35 35 H 1.09004 * 109.46946 * 150.00034 * 4 3 2 36 36 H 1.08004 * 119.99222 * 187.69699 * 5 3 2 37 37 H 1.08995 * 113.46222 * 321.86622 * 9 8 6 38 38 H 1.09000 * 113.46432 * 92.24342 * 9 8 6 39 39 H 1.09003 * 114.20151 * 220.34073 * 10 9 8 40 40 H 1.09001 * 114.20576 * 87.52227 * 10 9 8 41 41 H 1.08999 * 109.47699 * 65.66600 * 13 11 8 42 42 H 1.09002 * 109.47148 * 305.66054 * 13 11 8 43 43 H 1.09001 * 109.47168 * 269.99674 * 15 14 13 44 44 H 1.08994 * 109.47795 * 30.00156 * 15 14 13 45 45 H 1.09004 * 109.46926 * 150.00307 * 15 14 13 46 46 H 1.08999 * 109.47243 * 299.99280 * 18 16 14 47 47 H 1.09000 * 109.47421 * 59.99728 * 18 16 14 48 48 H 0.97001 * 119.99946 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2367 2.1478 1.3041 5 6 2.2951 2.0332 -1.1510 6 6 1.9379 1.3900 -2.4247 7 8 1.3054 0.3512 -2.4250 8 7 2.3114 1.9517 -3.5914 9 6 2.9779 3.1969 -4.0018 10 6 2.2360 3.0888 -5.3412 11 6 2.2327 1.5890 -5.0145 12 1 3.1155 1.0628 -5.3778 13 6 0.9276 0.8860 -5.3928 14 7 0.9969 0.4455 -6.7883 15 6 0.6420 1.3711 -7.8670 16 6 1.3871 -0.8112 -7.0798 17 8 1.7687 -1.5481 -6.1955 18 6 1.3494 -1.3005 -8.5046 19 16 1.9302 -3.0136 -8.5697 20 6 1.7847 -3.3204 -10.2987 21 1 1.4222 -2.5442 -10.9563 22 6 2.1371 -4.5594 -10.8158 23 7 2.5794 -5.5053 -10.0144 24 14 1.9835 -4.8844 -12.6488 25 1 2.8402 -3.9278 -13.3946 26 1 2.4191 -6.2732 -12.9435 27 1 0.5688 -4.7109 -13.0655 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3179 2.6653 1.5796 34 1 2.4973 1.4309 2.0827 35 1 3.0430 2.8730 1.1934 36 1 2.7709 3.0028 -1.1504 37 1 2.6816 4.0631 -3.4101 38 1 4.0596 3.1000 -4.0945 39 1 2.8391 3.3560 -6.2089 40 1 1.2474 3.5481 -5.3429 41 1 0.0938 1.5774 -5.2710 42 1 0.7800 0.0212 -4.7458 43 1 -0.4229 1.2855 -8.0836 44 1 0.8692 2.3918 -7.5595 45 1 1.2154 1.1247 -8.7606 46 1 0.3273 -1.2486 -8.8797 47 1 1.9948 -0.6747 -9.1210 48 1 2.8253 -6.3713 -10.3757 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739775544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = -12.195882 kcal Electronic energy + Delta-G solvation = -27225.553136 eV Core-core repulsion = 23408.981801 eV Total energy + Delta-G solvation = -3816.571335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.84328 -39.29332 -38.46257 -35.83865 -35.18449 -32.40272 -31.52063 -30.59233 -29.83247 -28.22846 -27.79822 -26.29087 -25.44671 -23.98015 -23.28282 -22.54494 -19.81140 -19.19899 -18.31006 -17.62722 -17.32925 -16.60240 -16.27691 -15.96893 -15.33227 -15.23339 -14.78408 -14.74069 -14.37084 -14.04371 -13.76252 -13.63910 -13.33857 -13.20290 -13.02779 -12.94381 -12.80171 -12.74936 -12.57042 -12.45493 -12.25604 -12.08040 -12.02290 -11.83974 -11.64415 -11.18703 -11.02294 -11.01917 -10.88829 -10.80994 -10.71217 -9.78928 -9.47412 -9.37366 -9.27374 -9.03424 -8.85497 -8.43160 -8.18950 -6.46929 -6.18602 -3.89198 1.16902 2.54825 3.05459 3.09917 3.21056 3.24964 3.29105 3.32344 3.67633 4.02672 4.22961 4.26469 4.50352 4.65823 4.75443 4.83308 4.92383 5.05578 5.06503 5.11473 5.14373 5.14796 5.16068 5.18841 5.24464 5.37221 5.41569 5.44093 5.45842 5.52764 5.54423 5.58242 5.66338 5.70716 5.85456 5.92588 5.94325 6.10035 6.16170 6.16961 6.18224 6.32182 6.45611 6.68645 7.57722 7.61835 7.64156 8.14953 8.37560 8.62151 9.26161 10.88731 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.002249 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.338656 B =12446.588535 C =13446.429249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.108 4.108 3 C -0.027 4.027 4 C -0.125 4.125 5 C -0.228 4.228 6 C 0.570 3.430 7 O -0.521 6.521 8 N -0.642 5.642 9 C 0.102 3.898 10 C -0.154 4.154 11 C 0.123 3.877 12 H 0.097 0.903 13 C 0.114 3.886 14 N -0.623 5.623 15 C 0.080 3.920 16 C 0.530 3.470 17 O -0.508 6.508 18 C -0.149 4.149 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 24.227 16.459 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C -0.029 4.029 4 C -0.182 4.182 5 C -0.249 4.249 6 C 0.363 3.637 7 O -0.399 6.399 8 N -0.379 5.379 9 C -0.021 4.021 10 C -0.192 4.192 11 C 0.019 3.981 12 H 0.115 0.885 13 C -0.010 4.010 14 N -0.360 5.360 15 C -0.063 4.063 16 C 0.317 3.683 17 O -0.381 6.381 18 C -0.299 4.299 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.129 22.272 18.007 28.663 hybrid contribution -0.338 0.903 -2.265 2.462 sum -1.467 23.175 15.742 28.054 Atomic orbital electron populations 1.21514 0.94108 1.01923 1.01198 1.21074 0.97270 0.92305 1.03870 1.22593 0.90150 0.95817 0.94318 1.20996 1.02508 1.00220 0.94468 1.22245 1.08848 1.02155 0.91629 1.18141 0.79472 0.83613 0.82447 1.90787 1.39825 1.23058 1.86226 1.49648 1.59716 1.23110 1.05400 1.22913 0.97882 0.87288 0.94030 1.23585 1.01934 0.96017 0.97654 1.23111 1.00048 0.95695 0.79268 0.88544 1.21564 0.95262 1.01057 0.83158 1.47808 1.69412 1.12526 1.06259 1.21785 1.00740 0.93124 0.90675 1.20402 0.76243 0.80563 0.91055 1.90732 1.44144 1.54564 1.48695 1.23554 1.05173 1.06267 0.94939 1.85449 1.84592 1.02588 1.10904 1.22819 1.51208 1.01656 0.92654 0.91005 1.24995 0.94576 0.95039 0.99010 1.70013 1.40909 1.04168 1.35170 0.86228 0.78670 0.77494 0.83119 1.19956 1.20835 1.19950 0.93896 0.91874 0.92514 0.87657 0.92113 0.90245 0.91052 0.91288 0.86063 0.90412 0.89774 0.89071 0.88641 0.90765 0.87815 0.92764 0.91384 0.90650 0.89254 0.89299 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.45 37.16 0.35 -1.07 16 2 C -0.11 -1.20 5.33 -27.88 -0.15 -1.35 16 3 C -0.03 -0.25 5.36 -101.17 -0.54 -0.79 16 4 C -0.13 -0.75 10.05 36.00 0.36 -0.39 16 5 C -0.23 -2.25 9.47 -37.81 -0.36 -2.61 16 6 C 0.57 7.44 7.78 -12.67 -0.10 7.34 16 7 O -0.52 -8.58 10.98 5.26 0.06 -8.52 16 8 N -0.64 -7.21 3.57 -178.83 -0.64 -7.84 16 9 C 0.10 0.70 8.34 -8.50 -0.07 0.63 16 10 C -0.15 -1.07 7.13 -26.22 -0.19 -1.25 16 11 C 0.12 1.43 4.29 -72.39 -0.31 1.12 16 12 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 13 C 0.11 1.57 5.18 -4.04 -0.02 1.55 16 14 N -0.62 -9.10 2.87 -181.57 -0.52 -9.62 16 15 C 0.08 0.81 10.23 59.85 0.61 1.43 16 16 C 0.53 10.50 7.68 -10.99 -0.08 10.42 16 17 O -0.51 -12.34 15.42 5.56 0.09 -12.26 16 18 C -0.15 -3.09 4.83 36.01 0.17 -2.91 16 19 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 20 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.52 13.22 55.49 0.73 -25.79 16 24 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.80 6.88 -51.93 -0.36 0.44 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.11 1.51 5.58 -51.93 -0.29 1.22 16 32 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.38 8.06 -51.93 -0.42 -0.04 16 35 H 0.07 0.34 8.06 -51.93 -0.42 -0.08 16 36 H 0.12 0.89 7.97 -52.48 -0.42 0.48 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.58 7.93 -51.93 -0.41 0.17 16 41 H 0.07 0.86 7.83 -51.93 -0.41 0.46 16 42 H 0.10 1.89 6.18 -51.93 -0.32 1.57 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.49 7.17 -51.93 -0.37 0.12 16 45 H 0.07 0.77 6.48 -51.93 -0.34 0.43 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 47 H 0.09 1.67 7.25 -51.92 -0.38 1.29 16 48 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 404.44 15.07 6.09 6.09 Total: -1.00 -37.11 404.44 -9.44 -46.55 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.89 Total: -0.24 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.12 Total: -0.99 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.43 Total: -43.25 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.14 Total: -20.78 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.11 -9.44 -46.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739775544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.354 kcal (2) G-P(sol) polarization free energy of solvation -37.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds