Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47105 * 2 1 4 4 C 1.50698 * 119.99992 * 87.82039 * 3 2 1 5 5 C 1.32994 * 119.99608 * 267.82897 * 3 2 1 6 6 C 1.47094 * 120.00419 * 7.69505 * 5 3 2 7 7 O 1.21615 * 120.00084 * 6.00671 * 6 5 3 8 8 N 1.34773 * 120.00145 * 186.00492 * 6 5 3 9 9 C 1.47074 * 136.05836 * 355.06974 * 8 6 5 10 10 C 1.53499 * 87.98420 * 207.08712 * 9 8 6 11 11 C 1.47069 * 136.05934 * 175.02007 * 8 6 5 12 12 H 1.08999 * 113.46920 * 267.75170 * 11 8 6 13 13 C 1.52998 * 113.46580 * 38.13526 * 11 8 6 14 14 N 1.46506 * 109.46966 * 185.66503 * 13 11 8 15 15 C 1.46502 * 119.99447 * 274.79535 * 14 13 11 16 16 C 1.34772 * 120.00250 * 94.79856 * 14 13 11 17 17 O 1.21276 * 120.00261 * 354.92524 * 16 14 13 18 18 C 1.50702 * 119.99854 * 174.93203 * 16 14 13 19 19 S 1.81002 * 109.46780 * 179.97438 * 18 16 14 20 20 C 1.76204 * 99.99819 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99912 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00174 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99839 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47212 * 60.00617 * 24 22 20 26 26 H 1.48502 * 109.47318 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47305 * 300.00579 * 24 22 20 28 28 H 1.08995 * 109.47070 * 299.99647 * 1 2 3 29 29 H 1.08993 * 109.47195 * 60.00086 * 1 2 3 30 30 H 1.09003 * 109.46596 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47070 * 240.00353 * 2 1 3 32 32 H 1.09001 * 109.46916 * 119.99925 * 2 1 3 33 33 H 1.08992 * 109.47406 * 270.00624 * 4 3 2 34 34 H 1.09000 * 109.47054 * 30.00628 * 4 3 2 35 35 H 1.09004 * 109.46946 * 150.00034 * 4 3 2 36 36 H 1.08004 * 119.99222 * 187.69699 * 5 3 2 37 37 H 1.08995 * 113.46222 * 321.86622 * 9 8 6 38 38 H 1.09000 * 113.46432 * 92.24342 * 9 8 6 39 39 H 1.09003 * 114.20151 * 220.34073 * 10 9 8 40 40 H 1.09001 * 114.20576 * 87.52227 * 10 9 8 41 41 H 1.08999 * 109.47699 * 65.66600 * 13 11 8 42 42 H 1.09002 * 109.47148 * 305.66054 * 13 11 8 43 43 H 1.09001 * 109.47168 * 269.99674 * 15 14 13 44 44 H 1.08994 * 109.47795 * 30.00156 * 15 14 13 45 45 H 1.09004 * 109.46926 * 150.00307 * 15 14 13 46 46 H 1.08999 * 109.47243 * 299.99280 * 18 16 14 47 47 H 1.09000 * 109.47421 * 59.99728 * 18 16 14 48 48 H 0.97001 * 119.99946 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2367 2.1478 1.3041 5 6 2.2951 2.0332 -1.1510 6 6 1.9379 1.3900 -2.4247 7 8 1.3054 0.3512 -2.4250 8 7 2.3114 1.9517 -3.5914 9 6 2.9779 3.1969 -4.0018 10 6 2.2360 3.0888 -5.3412 11 6 2.2327 1.5890 -5.0145 12 1 3.1155 1.0628 -5.3778 13 6 0.9276 0.8860 -5.3928 14 7 0.9969 0.4455 -6.7883 15 6 0.6420 1.3711 -7.8670 16 6 1.3871 -0.8112 -7.0798 17 8 1.7687 -1.5481 -6.1955 18 6 1.3494 -1.3005 -8.5046 19 16 1.9302 -3.0136 -8.5697 20 6 1.7847 -3.3204 -10.2987 21 1 1.4222 -2.5442 -10.9563 22 6 2.1371 -4.5594 -10.8158 23 7 2.5794 -5.5053 -10.0144 24 14 1.9835 -4.8844 -12.6488 25 1 2.8402 -3.9278 -13.3946 26 1 2.4191 -6.2732 -12.9435 27 1 0.5688 -4.7109 -13.0655 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3179 2.6653 1.5796 34 1 2.4973 1.4309 2.0827 35 1 3.0430 2.8730 1.1934 36 1 2.7709 3.0028 -1.1504 37 1 2.6816 4.0631 -3.4101 38 1 4.0596 3.1000 -4.0945 39 1 2.8391 3.3560 -6.2089 40 1 1.2474 3.5481 -5.3429 41 1 0.0938 1.5774 -5.2710 42 1 0.7800 0.0212 -4.7458 43 1 -0.4229 1.2855 -8.0836 44 1 0.8692 2.3918 -7.5595 45 1 1.2154 1.1247 -8.7606 46 1 0.3273 -1.2486 -8.8797 47 1 1.9948 -0.6747 -9.1210 48 1 2.8253 -6.3713 -10.3757 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739775544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = -37.042213 kcal Electronic energy + Delta-G solvation = -27226.630554 eV Core-core repulsion = 23408.981801 eV Total energy + Delta-G solvation = -3817.648753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.74963 -40.65098 -39.41080 -36.68988 -36.52492 -34.59559 -32.46815 -31.78526 -30.73168 -29.34924 -28.50939 -27.70629 -27.25079 -24.83352 -24.24309 -23.31391 -20.77246 -20.54974 -19.56593 -19.10229 -18.21602 -18.04559 -17.41326 -17.06193 -16.88901 -16.50354 -16.29630 -15.87894 -15.64192 -15.23164 -14.70403 -14.67858 -14.42599 -14.32646 -14.22683 -13.92258 -13.74462 -13.63064 -13.60491 -13.50105 -13.18346 -13.14863 -13.07709 -12.87075 -12.86683 -12.73489 -12.60666 -12.47618 -11.94729 -11.81041 -11.74959 -11.62862 -11.13480 -10.94260 -10.38488 -10.27950 -10.16283 -9.82304 -9.51523 -8.70269 -8.34976 -6.14705 0.39204 1.22844 1.43471 1.43954 1.53353 1.54126 1.77895 2.18926 2.26947 2.36460 2.98829 3.24686 3.32379 3.60178 3.71490 3.79702 3.90060 4.01521 4.08497 4.11650 4.20174 4.32645 4.42055 4.44940 4.46592 4.47754 4.50139 4.62417 4.64281 4.66637 4.69109 4.76218 4.82225 4.92470 4.93199 4.97475 5.02620 5.09954 5.25993 5.28985 5.31850 5.40263 5.47987 5.51934 5.72414 6.18662 6.24872 6.81216 7.05359 7.12012 7.23447 8.74229 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.002249 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.338656 B =12446.588535 C =13446.429249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C -0.025 4.025 4 C -0.120 4.120 5 C -0.235 4.235 6 C 0.552 3.448 7 O -0.571 6.571 8 N -0.650 5.650 9 C 0.104 3.896 10 C -0.128 4.128 11 C 0.110 3.890 12 H 0.066 0.934 13 C 0.119 3.881 14 N -0.607 5.607 15 C 0.069 3.931 16 C 0.525 3.475 17 O -0.569 6.569 18 C -0.118 4.118 19 S -0.163 6.163 20 C -0.544 4.544 21 H 0.086 0.914 22 C 0.010 3.990 23 N -0.913 5.913 24 Si 1.002 2.998 25 H -0.259 1.259 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 28.824 15.550 32.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C -0.027 4.027 4 C -0.176 4.176 5 C -0.255 4.255 6 C 0.346 3.654 7 O -0.453 6.453 8 N -0.385 5.385 9 C -0.018 4.018 10 C -0.165 4.165 11 C 0.005 3.995 12 H 0.084 0.916 13 C -0.005 4.005 14 N -0.341 5.341 15 C -0.072 4.072 16 C 0.313 3.687 17 O -0.447 6.447 18 C -0.269 4.269 19 S 0.065 5.935 20 C -0.691 4.691 21 H 0.104 0.896 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.823 3.177 25 H -0.183 1.183 26 H -0.205 1.205 27 H -0.186 1.186 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.172 0.828 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.125 0.875 47 H 0.133 0.867 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.391 26.976 17.077 31.958 hybrid contribution -0.303 -0.453 -1.909 1.985 sum -1.694 26.523 15.169 30.601 Atomic orbital electron populations 1.21444 0.94199 1.01323 1.01190 1.21001 0.97319 0.93980 1.02562 1.22839 0.89050 0.94723 0.96061 1.21044 1.03835 1.00435 0.92301 1.22374 1.09719 1.03359 0.90045 1.18888 0.79113 0.83287 0.84063 1.90781 1.42153 1.25293 1.87115 1.49897 1.59488 1.24478 1.04650 1.23176 0.98266 0.86201 0.94121 1.23585 1.03414 0.90933 0.98609 1.23127 0.97266 0.98719 0.80421 0.91557 1.21567 0.97851 0.99543 0.81549 1.47776 1.67082 1.11265 1.07963 1.22192 1.01761 0.93966 0.89276 1.20329 0.76368 0.81986 0.90016 1.90717 1.47313 1.56752 1.49919 1.23349 1.06116 1.01156 0.96302 1.85728 1.85778 1.09534 1.12496 1.23157 1.51258 1.02420 0.92298 0.89623 1.26202 0.93754 0.94582 1.04879 1.70200 1.42143 1.04776 1.37862 0.84957 0.79370 0.77574 0.75791 1.18323 1.20514 1.18586 0.91265 0.94213 0.93530 0.91741 0.90559 0.88838 0.90313 0.89456 0.82838 0.87387 0.88850 0.86691 0.86724 0.87977 0.93246 0.91267 0.87305 0.90232 0.87467 0.86750 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 9.45 71.98 0.68 -2.20 16 2 C -0.11 -2.61 5.33 29.85 0.16 -2.45 16 3 C -0.02 -0.44 5.36 -17.61 -0.09 -0.54 16 4 C -0.12 -1.10 10.05 71.24 0.72 -0.39 16 5 C -0.23 -4.43 9.47 23.43 0.22 -4.21 16 6 C 0.55 15.04 7.78 86.57 0.67 15.71 16 7 O -0.57 -20.87 10.98 -4.08 -0.04 -20.92 16 8 N -0.65 -14.37 3.57 -837.95 -2.99 -17.36 16 9 C 0.10 1.11 8.34 83.18 0.69 1.80 16 10 C -0.13 -1.29 7.13 30.93 0.22 -1.07 16 11 C 0.11 2.52 4.29 41.79 0.18 2.70 16 12 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 13 C 0.12 3.35 5.18 86.38 0.45 3.79 16 14 N -0.61 -17.47 2.87 -846.75 -2.43 -19.90 16 15 C 0.07 1.18 10.23 127.77 1.31 2.48 16 16 C 0.53 21.61 7.68 87.66 0.67 22.28 16 17 O -0.57 -29.95 15.42 -3.02 -0.05 -29.99 16 18 C -0.12 -4.94 4.83 71.24 0.34 -4.60 16 19 S -0.16 -9.46 20.57 -56.49 -1.16 -10.62 16 20 C -0.54 -31.68 9.50 67.95 0.65 -31.03 16 21 H 0.09 4.57 7.80 -2.91 -0.02 4.54 16 22 C 0.01 0.60 5.49 84.86 0.47 1.06 16 23 N -0.91 -57.63 13.22 21.65 0.29 -57.34 16 24 Si 1.00 44.16 29.55 68.60 2.03 46.18 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.09 6.88 -2.39 -0.02 1.08 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 2.08 5.58 -2.39 -0.01 2.07 16 32 H 0.08 1.47 8.06 -2.39 -0.02 1.45 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.63 8.06 -2.39 -0.02 0.61 16 35 H 0.09 0.53 8.06 -2.38 -0.02 0.51 16 36 H 0.15 1.79 7.97 -2.91 -0.02 1.77 16 37 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.11 0.79 7.93 -2.39 -0.02 0.77 16 41 H 0.10 2.26 7.83 -2.39 -0.02 2.24 16 42 H 0.05 1.98 6.18 -2.39 -0.01 1.96 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.11 1.01 7.17 -2.39 -0.02 0.99 16 45 H 0.08 1.34 6.48 -2.38 -0.02 1.33 16 46 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 47 H 0.11 4.17 7.25 -2.40 -0.02 4.16 16 48 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -91.48 404.44 3.91 -87.57 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.94 Total: 19.01 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 7.33 Total: 3.36 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -5.13 Total: -94.60 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.09 Total: -50.91 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -9.46 SS G_CDS: -1.16 Total: -10.62 kcal Total: -91.48 3.91 -87.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739775544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.530 kcal (2) G-P(sol) polarization free energy of solvation -91.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds