Wall clock time and date at job start Sat Apr 11 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47101 * 2 1 4 4 C 1.50695 * 120.00306 * 275.00412 * 3 2 1 5 5 C 1.32997 * 119.99671 * 94.99927 * 3 2 1 6 6 C 1.47104 * 120.00016 * 183.74727 * 5 3 2 7 7 O 1.21618 * 119.99758 * 5.43071 * 6 5 3 8 8 N 1.34772 * 119.99977 * 185.43612 * 6 5 3 9 9 C 1.47070 * 136.05879 * 355.24632 * 8 6 5 10 10 C 1.53495 * 87.98710 * 152.84934 * 9 8 6 11 11 C 1.47067 * 136.05678 * 175.20150 * 8 6 5 12 12 H 1.09005 * 113.46994 * 92.31607 * 11 8 6 13 13 C 1.52998 * 113.46979 * 321.93358 * 11 8 6 14 14 N 1.46497 * 109.47505 * 173.90537 * 13 11 8 15 15 C 1.46505 * 119.99655 * 275.06509 * 14 13 11 16 16 C 1.34770 * 120.00394 * 95.33399 * 14 13 11 17 17 O 1.21277 * 120.00065 * 359.72939 * 16 14 13 18 18 C 1.50704 * 119.99972 * 179.72781 * 16 14 13 19 19 S 1.81008 * 109.47067 * 180.02562 * 18 16 14 20 20 C 1.76189 * 99.99996 * 179.97438 * 19 18 16 21 21 H 1.08008 * 120.00249 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00137 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99797 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00049 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47052 * 59.99754 * 24 22 20 26 26 H 1.48507 * 109.47017 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47121 * 299.99622 * 24 22 20 28 28 H 1.09000 * 109.46669 * 299.99628 * 1 2 3 29 29 H 1.09004 * 109.47425 * 59.99350 * 1 2 3 30 30 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47034 * 240.00654 * 2 1 3 32 32 H 1.08999 * 109.47339 * 120.00177 * 2 1 3 33 33 H 1.09000 * 109.47125 * 240.53886 * 4 3 2 34 34 H 1.08998 * 109.47040 * 0.53715 * 4 3 2 35 35 H 1.08999 * 109.47627 * 120.54168 * 4 3 2 36 36 H 1.07998 * 120.00020 * 3.75132 * 5 3 2 37 37 H 1.09006 * 113.46803 * 267.62680 * 9 8 6 38 38 H 1.08995 * 113.46579 * 38.00696 * 9 8 6 39 39 H 1.09006 * 114.20713 * 272.48157 * 10 9 8 40 40 H 1.08995 * 114.20882 * 139.65240 * 10 9 8 41 41 H 1.08997 * 109.47085 * 53.89868 * 13 11 8 42 42 H 1.09005 * 109.46764 * 293.90199 * 13 11 8 43 43 H 1.09002 * 109.46891 * 265.48863 * 15 14 13 44 44 H 1.08997 * 109.47264 * 25.48488 * 15 14 13 45 45 H 1.08993 * 109.47342 * 145.49025 * 15 14 13 46 46 H 1.08999 * 109.47136 * 300.00055 * 18 16 14 47 47 H 1.08993 * 109.47391 * 60.00446 * 18 16 14 48 48 H 0.97002 * 119.99878 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1762 2.1692 -1.3000 5 6 2.3486 2.0143 1.1474 6 6 2.7601 3.4266 1.1561 7 8 2.7165 4.0789 0.1306 8 7 3.1854 3.9975 2.3005 9 6 3.2970 3.5904 3.7093 10 6 4.4526 4.5907 3.8505 11 6 3.7429 5.3015 2.6898 12 1 2.9875 6.0170 3.0148 13 6 4.7049 5.8867 1.6540 14 7 5.0924 7.2407 2.0574 15 6 4.2420 8.3810 1.7071 16 6 6.2340 7.4379 2.7461 17 8 6.9380 6.4940 3.0362 18 6 6.6357 8.8315 3.1558 19 16 8.2034 8.7668 4.0583 20 6 8.4280 10.4796 4.4046 21 1 7.6954 11.1990 4.0692 22 6 9.5468 10.9047 5.1074 23 7 10.4398 10.0281 5.5157 24 14 9.7853 12.7208 5.4739 25 1 8.6433 13.2165 6.2834 26 1 11.0482 12.9112 6.2317 27 1 9.8537 13.4784 4.1985 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.2179 2.4579 -1.4398 34 1 1.8629 1.5288 -2.1245 35 1 1.5518 3.0624 -1.2762 36 1 2.3034 1.4593 2.0728 37 1 2.4229 3.8498 4.3067 38 1 3.6023 2.5520 3.8381 39 1 5.4305 4.1831 3.5939 40 1 4.4483 5.1494 4.7863 41 1 4.2134 5.9239 0.6819 42 1 5.5936 5.2589 1.5881 43 1 4.5979 8.8280 0.7788 44 1 3.2146 8.0414 1.5762 45 1 4.2808 9.1220 2.5054 46 1 6.7537 9.4516 2.2672 47 1 5.8644 9.2583 3.7968 48 1 11.2216 10.3251 6.0072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739775547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:14 Heat of formation + Delta-G solvation = -19.502168 kcal Electronic energy + Delta-G solvation = -26910.046467 eV Core-core repulsion = 23093.158307 eV Total energy + Delta-G solvation = -3816.888160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81770 -39.31182 -38.35867 -36.23800 -35.22429 -32.42283 -31.49243 -30.74529 -29.94581 -28.06121 -27.62689 -26.30977 -25.46706 -24.51194 -23.33420 -22.35906 -19.68587 -19.23416 -18.41872 -17.65350 -17.34638 -16.64450 -16.16014 -16.01734 -15.44965 -15.06792 -14.96074 -14.79798 -14.62570 -14.25021 -13.91192 -13.73026 -13.34919 -13.11250 -13.03861 -12.95437 -12.84365 -12.54975 -12.52590 -12.47859 -12.26542 -12.05748 -11.94893 -11.76830 -11.59921 -11.57016 -11.33172 -11.03704 -11.03551 -10.77060 -10.73219 -9.81530 -9.67018 -9.48339 -9.33919 -9.05332 -8.89584 -8.44117 -8.22433 -6.49259 -6.21037 -3.91432 1.10638 2.52446 3.02740 3.05553 3.14011 3.23784 3.27730 3.30844 3.65620 4.12248 4.21170 4.28236 4.42425 4.66848 4.76522 4.78629 4.83659 4.85034 4.98138 5.07016 5.13587 5.13866 5.15018 5.17264 5.21746 5.28961 5.38806 5.45997 5.48451 5.53170 5.53693 5.60329 5.72711 5.73179 5.75213 5.79694 5.87750 5.91867 5.98033 6.14846 6.16154 6.22804 6.26358 6.65293 7.54678 7.59155 7.60153 8.04639 8.35534 8.57333 9.24223 10.86282 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032842 B = 0.001905 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.363861 B =14691.268862 C =14989.627014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.029 4.029 4 C -0.118 4.118 5 C -0.226 4.226 6 C 0.573 3.427 7 O -0.542 6.542 8 N -0.639 5.639 9 C 0.099 3.901 10 C -0.143 4.143 11 C 0.120 3.880 12 H 0.091 0.909 13 C 0.113 3.887 14 N -0.621 5.621 15 C 0.081 3.919 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.150 4.150 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.553 -17.038 -8.321 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.031 4.031 4 C -0.174 4.174 5 C -0.247 4.247 6 C 0.367 3.633 7 O -0.421 6.421 8 N -0.375 5.375 9 C -0.024 4.024 10 C -0.181 4.181 11 C 0.015 3.985 12 H 0.109 0.891 13 C -0.011 4.011 14 N -0.358 5.358 15 C -0.062 4.062 16 C 0.321 3.679 17 O -0.387 6.387 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.434 -18.222 -8.544 28.681 hybrid contribution -0.827 2.330 0.073 2.473 sum -21.261 -15.893 -8.471 27.863 Atomic orbital electron populations 1.21707 0.94049 1.02082 1.02497 1.20771 0.96661 0.92588 1.03364 1.22574 0.89930 0.95216 0.95414 1.21057 1.03755 0.99860 0.92761 1.22264 1.09171 0.94304 0.98954 1.18122 0.76227 0.87477 0.81453 1.90767 1.54524 1.65298 1.31543 1.49671 1.63694 1.16747 1.07413 1.23013 0.98236 1.00538 0.80638 1.23504 0.98383 0.97244 0.98935 1.23116 0.94534 0.86660 0.94152 0.89078 1.21562 0.98730 0.83683 0.97149 1.47792 1.23506 1.06940 1.57552 1.21765 0.94411 0.88889 1.01177 1.20349 0.79612 0.91235 0.76675 1.90677 1.51284 1.43514 1.53212 1.23558 1.06277 0.95620 1.04612 1.85357 1.18157 1.11156 1.68711 1.22826 1.11028 0.92456 1.42092 0.91017 1.24982 0.94841 0.98778 0.94924 1.70008 1.10657 1.33969 1.35659 0.86236 0.77685 0.83101 0.78550 1.19954 1.20817 1.19948 0.92402 0.92270 0.92012 0.90386 0.90741 0.90311 0.92944 0.89324 0.85944 0.89794 0.90287 0.87758 0.89083 0.89545 0.89125 0.92583 0.91341 0.90773 0.89317 0.89270 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.38 16 2 C -0.10 -0.55 6.03 -27.88 -0.17 -0.72 16 3 C -0.03 -0.25 5.37 -101.17 -0.54 -0.79 16 4 C -0.12 -1.09 8.36 36.00 0.30 -0.78 16 5 C -0.23 -2.11 9.46 -37.80 -0.36 -2.47 16 6 C 0.57 6.97 7.83 -12.67 -0.10 6.87 16 7 O -0.54 -7.91 12.69 5.26 0.07 -7.85 16 8 N -0.64 -7.09 3.57 -178.83 -0.64 -7.73 16 9 C 0.10 0.82 8.33 -8.50 -0.07 0.75 16 10 C -0.14 -1.55 8.02 -26.22 -0.21 -1.76 16 11 C 0.12 1.39 4.27 -72.39 -0.31 1.08 16 12 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 13 C 0.11 1.56 5.28 -4.04 -0.02 1.54 16 14 N -0.62 -9.05 2.87 -181.57 -0.52 -9.57 16 15 C 0.08 0.90 10.17 59.85 0.61 1.51 16 16 C 0.53 10.01 7.69 -10.99 -0.08 9.92 16 17 O -0.51 -11.26 15.36 5.56 0.09 -11.17 16 18 C -0.15 -3.03 4.77 36.01 0.17 -2.86 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 24 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 8.00 -51.93 -0.42 -0.04 16 33 H 0.08 0.84 7.63 -51.93 -0.40 0.44 16 34 H 0.05 0.37 8.00 -51.93 -0.42 -0.04 16 35 H 0.09 0.96 6.81 -51.93 -0.35 0.60 16 36 H 0.12 0.91 7.93 -52.49 -0.42 0.49 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 1.33 7.93 -51.93 -0.41 0.92 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.22 7.03 -51.93 -0.36 0.86 16 42 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 45 H 0.07 0.79 6.64 -51.93 -0.34 0.45 16 46 H 0.09 1.70 8.11 -51.92 -0.42 1.27 16 47 H 0.09 1.65 7.41 -51.92 -0.38 1.27 16 48 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 409.53 15.07 6.17 6.17 Total: -1.00 -34.73 409.53 -9.61 -44.34 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.05 Total: -0.37 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.22 Total: -0.98 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.43 Total: -42.61 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.15 Total: -19.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.73 -9.61 -44.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739775547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.837 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds