Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47101 * 2 1 4 4 C 1.50695 * 120.00306 * 275.00412 * 3 2 1 5 5 C 1.32997 * 119.99671 * 94.99927 * 3 2 1 6 6 C 1.47104 * 120.00016 * 183.74727 * 5 3 2 7 7 O 1.21618 * 119.99758 * 5.43071 * 6 5 3 8 8 N 1.34772 * 119.99977 * 185.43612 * 6 5 3 9 9 C 1.47070 * 136.05879 * 355.24632 * 8 6 5 10 10 C 1.53495 * 87.98710 * 152.84934 * 9 8 6 11 11 C 1.47067 * 136.05678 * 175.20150 * 8 6 5 12 12 H 1.09005 * 113.46994 * 92.31607 * 11 8 6 13 13 C 1.52998 * 113.46979 * 321.93358 * 11 8 6 14 14 N 1.46497 * 109.47505 * 173.90537 * 13 11 8 15 15 C 1.46505 * 119.99655 * 275.06509 * 14 13 11 16 16 C 1.34770 * 120.00394 * 95.33399 * 14 13 11 17 17 O 1.21277 * 120.00065 * 359.72939 * 16 14 13 18 18 C 1.50704 * 119.99972 * 179.72781 * 16 14 13 19 19 S 1.81008 * 109.47067 * 180.02562 * 18 16 14 20 20 C 1.76189 * 99.99996 * 179.97438 * 19 18 16 21 21 H 1.08008 * 120.00249 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00137 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99797 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00049 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47052 * 59.99754 * 24 22 20 26 26 H 1.48507 * 109.47017 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47121 * 299.99622 * 24 22 20 28 28 H 1.09000 * 109.46669 * 299.99628 * 1 2 3 29 29 H 1.09004 * 109.47425 * 59.99350 * 1 2 3 30 30 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47034 * 240.00654 * 2 1 3 32 32 H 1.08999 * 109.47339 * 120.00177 * 2 1 3 33 33 H 1.09000 * 109.47125 * 240.53886 * 4 3 2 34 34 H 1.08998 * 109.47040 * 0.53715 * 4 3 2 35 35 H 1.08999 * 109.47627 * 120.54168 * 4 3 2 36 36 H 1.07998 * 120.00020 * 3.75132 * 5 3 2 37 37 H 1.09006 * 113.46803 * 267.62680 * 9 8 6 38 38 H 1.08995 * 113.46579 * 38.00696 * 9 8 6 39 39 H 1.09006 * 114.20713 * 272.48157 * 10 9 8 40 40 H 1.08995 * 114.20882 * 139.65240 * 10 9 8 41 41 H 1.08997 * 109.47085 * 53.89868 * 13 11 8 42 42 H 1.09005 * 109.46764 * 293.90199 * 13 11 8 43 43 H 1.09002 * 109.46891 * 265.48863 * 15 14 13 44 44 H 1.08997 * 109.47264 * 25.48488 * 15 14 13 45 45 H 1.08993 * 109.47342 * 145.49025 * 15 14 13 46 46 H 1.08999 * 109.47136 * 300.00055 * 18 16 14 47 47 H 1.08993 * 109.47391 * 60.00446 * 18 16 14 48 48 H 0.97002 * 119.99878 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1762 2.1692 -1.3000 5 6 2.3486 2.0143 1.1474 6 6 2.7601 3.4266 1.1561 7 8 2.7165 4.0789 0.1306 8 7 3.1854 3.9975 2.3005 9 6 3.2970 3.5904 3.7093 10 6 4.4526 4.5907 3.8505 11 6 3.7429 5.3015 2.6898 12 1 2.9875 6.0170 3.0148 13 6 4.7049 5.8867 1.6540 14 7 5.0924 7.2407 2.0574 15 6 4.2420 8.3810 1.7071 16 6 6.2340 7.4379 2.7461 17 8 6.9380 6.4940 3.0362 18 6 6.6357 8.8315 3.1558 19 16 8.2034 8.7668 4.0583 20 6 8.4280 10.4796 4.4046 21 1 7.6954 11.1990 4.0692 22 6 9.5468 10.9047 5.1074 23 7 10.4398 10.0281 5.5157 24 14 9.7853 12.7208 5.4739 25 1 8.6433 13.2165 6.2834 26 1 11.0482 12.9112 6.2317 27 1 9.8537 13.4784 4.1985 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.2179 2.4579 -1.4398 34 1 1.8629 1.5288 -2.1245 35 1 1.5518 3.0624 -1.2762 36 1 2.3034 1.4593 2.0728 37 1 2.4229 3.8498 4.3067 38 1 3.6023 2.5520 3.8381 39 1 5.4305 4.1831 3.5939 40 1 4.4483 5.1494 4.7863 41 1 4.2134 5.9239 0.6819 42 1 5.5936 5.2589 1.5881 43 1 4.5979 8.8280 0.7788 44 1 3.2146 8.0414 1.5762 45 1 4.2808 9.1220 2.5054 46 1 6.7537 9.4516 2.2672 47 1 5.8644 9.2583 3.7968 48 1 11.2216 10.3251 6.0072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739775547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -40.501858 kcal Electronic energy + Delta-G solvation = -26910.957082 eV Core-core repulsion = 23093.158307 eV Total energy + Delta-G solvation = -3817.798775 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76927 -40.61066 -39.28624 -36.91964 -36.55284 -34.57143 -32.32949 -31.70156 -30.96527 -29.28967 -28.40086 -27.68464 -27.31696 -25.09063 -24.33905 -23.15292 -20.73405 -20.45434 -19.54937 -19.16277 -18.28530 -17.97048 -17.34710 -17.08979 -16.86572 -16.47766 -16.18670 -15.78506 -15.65666 -15.39544 -14.97904 -14.71077 -14.51048 -14.23210 -14.20920 -14.11804 -13.72471 -13.69536 -13.54407 -13.24066 -13.21297 -13.13699 -13.08666 -12.87951 -12.82021 -12.65002 -12.59193 -12.44819 -12.23208 -11.77303 -11.73529 -11.66555 -11.11730 -10.90845 -10.53562 -10.25663 -10.23866 -9.85376 -9.54126 -8.65086 -8.33312 -6.11054 0.37405 1.24608 1.44220 1.44584 1.53762 1.56745 1.75560 2.18798 2.27762 2.30507 3.00721 3.26339 3.33726 3.53505 3.68314 3.84121 3.86690 3.95869 4.06003 4.10706 4.20118 4.28915 4.30404 4.39539 4.41971 4.46824 4.49723 4.55074 4.60237 4.64624 4.68961 4.75815 4.81938 4.87176 4.88974 4.95186 5.02413 5.08825 5.17057 5.23431 5.34408 5.42806 5.46217 5.54822 5.62940 6.20475 6.24315 6.73632 7.07940 7.11614 7.16217 8.75505 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032842 B = 0.001905 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.363861 B =14691.268862 C =14989.627014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.023 4.023 4 C -0.116 4.116 5 C -0.238 4.238 6 C 0.562 3.438 7 O -0.577 6.577 8 N -0.643 5.643 9 C 0.112 3.888 10 C -0.146 4.146 11 C 0.118 3.882 12 H 0.107 0.893 13 C 0.120 3.880 14 N -0.608 5.608 15 C 0.073 3.927 16 C 0.533 3.467 17 O -0.554 6.554 18 C -0.124 4.124 19 S -0.146 6.146 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.264 1.264 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.102 -16.871 -8.198 30.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.025 4.025 4 C -0.172 4.172 5 C -0.258 4.258 6 C 0.357 3.643 7 O -0.460 6.460 8 N -0.378 5.378 9 C -0.010 4.010 10 C -0.184 4.184 11 C 0.013 3.987 12 H 0.125 0.875 13 C -0.004 4.004 14 N -0.343 5.343 15 C -0.069 4.069 16 C 0.321 3.679 17 O -0.431 6.431 18 C -0.275 4.275 19 S 0.081 5.919 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.163 0.837 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.121 0.879 47 H 0.129 0.871 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.032 -18.061 -8.425 30.457 hybrid contribution -0.116 2.228 -0.082 2.232 sum -23.147 -15.833 -8.507 29.307 Atomic orbital electron populations 1.21707 0.93390 1.02970 1.02133 1.20830 0.97041 0.90646 1.04532 1.22845 0.88656 0.96463 0.94553 1.20980 1.02123 0.99736 0.94392 1.22352 1.10138 0.92967 1.00356 1.18692 0.75887 0.88544 0.81145 1.90746 1.56227 1.66253 1.32736 1.49775 1.63119 1.16520 1.08427 1.23131 0.97851 1.00954 0.79028 1.23390 0.98138 0.98302 0.98548 1.23138 0.94538 0.87443 0.93549 0.87508 1.21493 0.98055 0.82906 0.97940 1.47738 1.22406 1.08397 1.55741 1.22061 0.95046 0.87857 1.01941 1.20128 0.80494 0.90112 0.77161 1.90669 1.52954 1.44288 1.55214 1.23377 1.02629 0.97094 1.04412 1.85528 1.23587 1.12183 1.70577 1.23173 1.11580 0.92573 1.42211 0.89977 1.26101 0.94316 1.04155 0.94444 1.70174 1.11354 1.36570 1.36589 0.85029 0.77969 0.76389 0.78769 1.18553 1.20414 1.18831 0.92766 0.92694 0.90492 0.89352 0.89479 0.92321 0.90841 0.91189 0.83655 0.87085 0.88379 0.90362 0.88896 0.89768 0.91891 0.91587 0.88912 0.89779 0.87897 0.87088 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.89 71.98 0.71 -0.43 16 2 C -0.09 -0.85 6.03 29.85 0.18 -0.67 16 3 C -0.02 -0.36 5.37 -17.62 -0.09 -0.46 16 4 C -0.12 -2.12 8.36 71.23 0.60 -1.53 16 5 C -0.24 -4.13 9.46 23.43 0.22 -3.91 16 6 C 0.56 13.47 7.83 86.57 0.68 14.15 16 7 O -0.58 -17.23 12.69 -4.09 -0.05 -17.28 16 8 N -0.64 -13.68 3.57 -837.95 -2.99 -16.66 16 9 C 0.11 1.64 8.33 83.18 0.69 2.33 16 10 C -0.15 -3.13 8.02 30.93 0.25 -2.89 16 11 C 0.12 2.66 4.27 41.79 0.18 2.84 16 12 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 13 C 0.12 3.35 5.28 86.38 0.46 3.81 16 14 N -0.61 -17.33 2.87 -846.77 -2.43 -19.77 16 15 C 0.07 1.46 10.17 127.77 1.30 2.76 16 16 C 0.53 20.16 7.69 87.66 0.67 20.83 16 17 O -0.55 -25.31 15.36 -3.02 -0.05 -25.35 16 18 C -0.12 -4.96 4.77 71.24 0.34 -4.62 16 19 S -0.15 -8.06 20.57 -56.49 -1.16 -9.23 16 20 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -55.73 13.22 21.65 0.29 -55.45 16 24 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.09 0.61 8.00 -2.39 -0.02 0.59 16 33 H 0.06 1.31 7.63 -2.39 -0.02 1.29 16 34 H 0.07 0.98 8.00 -2.39 -0.02 0.96 16 35 H 0.07 1.56 6.81 -2.39 -0.02 1.54 16 36 H 0.15 1.78 7.93 -2.91 -0.02 1.75 16 37 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 2.11 7.93 -2.38 -0.02 2.09 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.41 7.03 -2.39 -0.02 2.39 16 42 H 0.06 2.12 6.99 -2.38 -0.02 2.10 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.09 1.46 8.04 -2.39 -0.02 1.44 16 45 H 0.08 1.56 6.64 -2.39 -0.02 1.54 16 46 H 0.10 3.82 8.11 -2.40 -0.02 3.80 16 47 H 0.11 3.94 7.41 -2.40 -0.02 3.92 16 48 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -78.83 409.53 3.86 -74.97 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.93 Total: 20.31 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 7.29 Total: 3.04 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -5.13 Total: -91.88 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.10 Total: -42.63 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.23 kcal Total: -78.83 3.86 -74.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739775547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.470 kcal (2) G-P(sol) polarization free energy of solvation -78.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds