Wall clock time and date at job start Sat Apr 11 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46926 * 2 1 4 4 C 1.50699 * 120.00073 * 263.01514 * 3 2 1 5 5 C 1.32991 * 119.99902 * 83.01838 * 3 2 1 6 6 C 1.47099 * 120.00270 * 353.43397 * 5 3 2 7 7 O 1.21612 * 119.99708 * 2.67851 * 6 5 3 8 8 N 1.34771 * 120.00304 * 182.67014 * 6 5 3 9 9 C 1.47075 * 136.05748 * 354.43133 * 8 6 5 10 10 C 1.53490 * 87.98486 * 152.91398 * 9 8 6 11 11 C 1.47071 * 136.05923 * 174.47976 * 8 6 5 12 12 H 1.09003 * 113.46674 * 92.25054 * 11 8 6 13 13 C 1.52995 * 113.46850 * 321.86752 * 11 8 6 14 14 N 1.46490 * 109.47461 * 174.25987 * 13 11 8 15 15 C 1.46504 * 120.00024 * 267.83922 * 14 13 11 16 16 C 1.34780 * 120.00363 * 87.56040 * 14 13 11 17 17 O 1.21288 * 119.99391 * 0.02562 * 16 14 13 18 18 C 1.50695 * 120.00507 * 180.02562 * 16 14 13 19 19 S 1.80993 * 109.47335 * 180.02562 * 18 16 14 20 20 C 1.76202 * 100.00438 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99376 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00397 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99891 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00174 * 359.97438 * 22 20 19 25 25 H 1.48509 * 109.46991 * 89.99900 * 24 22 20 26 26 H 1.48493 * 109.47537 * 210.00070 * 24 22 20 27 27 H 1.48506 * 109.46930 * 330.00325 * 24 22 20 28 28 H 1.08995 * 109.47114 * 300.00118 * 1 2 3 29 29 H 1.09006 * 109.47006 * 60.00032 * 1 2 3 30 30 H 1.09000 * 109.46944 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47509 * 240.00096 * 2 1 3 32 32 H 1.08997 * 109.46939 * 119.99840 * 2 1 3 33 33 H 1.09003 * 109.47303 * 270.00577 * 4 3 2 34 34 H 1.09006 * 109.47126 * 30.00053 * 4 3 2 35 35 H 1.08991 * 109.47366 * 150.00061 * 4 3 2 36 36 H 1.08000 * 119.99689 * 173.43954 * 5 3 2 37 37 H 1.09000 * 113.46605 * 267.69142 * 9 8 6 38 38 H 1.08996 * 113.46545 * 38.07188 * 9 8 6 39 39 H 1.09001 * 114.20487 * 272.48165 * 10 9 8 40 40 H 1.09001 * 114.20949 * 139.65513 * 10 9 8 41 41 H 1.09004 * 109.47296 * 54.25627 * 13 11 8 42 42 H 1.09004 * 109.46792 * 294.26268 * 13 11 8 43 43 H 1.08998 * 109.47078 * 273.74025 * 15 14 13 44 44 H 1.08998 * 109.47071 * 33.74556 * 15 14 13 45 45 H 1.09002 * 109.46814 * 153.74351 * 15 14 13 46 46 H 1.09002 * 109.46832 * 300.00166 * 18 16 14 47 47 H 1.08999 * 109.47434 * 59.99792 * 18 16 14 48 48 H 0.97004 * 119.99517 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4331 2.0784 -1.2954 5 6 2.1219 2.0944 1.1432 6 6 1.5974 1.5075 2.3859 7 8 1.1259 0.3865 2.3771 8 7 1.6394 2.2118 3.5341 9 6 2.1985 3.5021 3.9650 10 6 1.1026 3.5569 5.0384 11 6 1.1473 2.0282 4.9078 12 1 1.8736 1.5561 5.5695 13 6 -0.2320 1.3700 4.9779 14 7 -0.5761 1.1049 6.3770 15 6 -0.2486 -0.1898 6.9792 16 6 -1.1889 2.0542 7.1118 17 8 -1.4559 3.1277 6.6145 18 6 -1.5424 1.7817 8.5511 19 16 -2.3494 3.2383 9.2604 20 6 -2.6447 2.6579 10.8976 21 1 -2.3397 1.6611 11.1803 22 6 -3.2692 3.4815 11.8239 23 7 -3.4893 3.0479 13.0471 24 14 -3.7961 5.2056 11.3351 25 1 -5.1827 5.1678 10.8047 26 1 -3.7448 6.0946 12.5235 27 1 -2.8797 5.7252 10.2884 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.4914 1.8969 -1.4828 34 1 1.8429 1.6622 -2.1119 35 1 2.2547 3.1515 -1.2285 36 1 2.5798 3.0724 1.1592 37 1 3.2050 3.4236 4.3760 38 1 2.1104 4.2862 3.2130 39 1 0.1689 4.0071 4.7012 40 1 1.4410 3.9331 6.0038 41 1 -0.2155 0.4315 4.4237 42 1 -0.9754 2.0368 4.5409 43 1 -1.0519 -0.8982 6.7769 44 1 0.6820 -0.5640 6.5525 45 1 -0.1323 -0.0704 8.0564 46 1 -2.2200 0.9296 8.6038 47 1 -0.6348 1.5594 9.1124 48 1 -3.9254 3.6237 13.6946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739775550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:17 Heat of formation + Delta-G solvation = -12.565201 kcal Electronic energy + Delta-G solvation = -27314.900812 eV Core-core repulsion = 23498.313461 eV Total energy + Delta-G solvation = -3816.587350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89029 -39.45942 -38.49469 -35.90564 -35.32518 -32.44074 -31.62759 -30.72594 -29.86088 -28.22777 -27.93092 -26.31981 -25.60443 -24.04193 -23.41935 -22.47693 -19.80015 -19.33172 -18.41555 -17.66236 -17.42236 -16.77528 -16.19884 -16.08268 -15.43127 -15.25148 -15.00096 -14.87106 -14.50721 -13.94522 -13.86957 -13.76988 -13.25141 -13.20614 -13.12428 -13.04325 -12.93294 -12.78657 -12.65368 -12.54971 -12.31111 -12.19903 -12.12745 -11.71274 -11.70414 -11.28202 -11.26168 -11.01396 -10.97444 -10.74356 -10.59063 -9.86458 -9.59143 -9.47878 -9.43541 -9.00638 -8.92709 -8.52465 -8.48979 -6.91952 -6.29081 -4.00730 1.07263 2.46833 2.80673 2.93881 3.06494 3.27684 3.33297 3.49545 3.61369 4.15184 4.30099 4.32555 4.41470 4.61510 4.70950 4.80251 4.81848 4.96714 5.01225 5.06286 5.09135 5.10282 5.13336 5.14020 5.19487 5.19902 5.31136 5.35249 5.42682 5.44695 5.51047 5.62314 5.68816 5.73755 5.76692 5.80607 5.90527 6.00875 6.01601 6.09325 6.12869 6.21625 6.33165 6.56188 7.44666 7.57106 7.93933 8.03025 8.41512 8.43805 9.17100 10.80114 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025195 B = 0.002169 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.045433 B =12906.106136 C =13335.457175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 C -0.028 4.028 4 C -0.127 4.127 5 C -0.228 4.228 6 C 0.572 3.428 7 O -0.535 6.535 8 N -0.639 5.639 9 C 0.098 3.902 10 C -0.140 4.140 11 C 0.119 3.881 12 H 0.092 0.908 13 C 0.115 3.885 14 N -0.620 5.620 15 C 0.078 3.922 16 C 0.531 3.469 17 O -0.514 6.514 18 C -0.121 4.121 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.953 -3.755 -25.646 29.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C -0.030 4.030 4 C -0.183 4.183 5 C -0.248 4.248 6 C 0.366 3.634 7 O -0.415 6.415 8 N -0.375 5.375 9 C -0.025 4.025 10 C -0.178 4.178 11 C 0.015 3.985 12 H 0.109 0.891 13 C -0.009 4.009 14 N -0.356 5.356 15 C -0.065 4.065 16 C 0.319 3.681 17 O -0.388 6.388 18 C -0.272 4.272 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.221 -2.855 -26.405 30.126 hybrid contribution 0.222 -0.569 0.763 0.978 sum 14.443 -3.424 -25.641 29.628 Atomic orbital electron populations 1.21577 0.94083 1.01808 1.01565 1.20951 0.97192 0.92365 1.03250 1.22606 0.90440 0.95750 0.94205 1.21004 1.02130 1.00688 0.94521 1.22242 1.08177 1.02218 0.92199 1.18107 0.78891 0.84006 0.82355 1.90728 1.47135 1.18206 1.85478 1.49681 1.56620 1.22539 1.08646 1.23030 0.98130 0.85018 0.96370 1.23487 0.99766 0.94892 0.99606 1.23114 0.96314 0.97122 0.81928 0.89067 1.21551 0.94882 1.02032 0.82386 1.47774 1.60801 1.15429 1.11576 1.21833 1.00787 0.84415 0.99493 1.20325 0.76473 0.83511 0.87783 1.90675 1.52224 1.23667 1.72233 1.23315 1.04525 1.05049 0.94288 1.84747 1.76807 1.17759 1.12304 1.22311 1.45630 1.04790 0.94098 0.89424 1.24718 0.94070 0.98584 0.93992 1.69943 1.40957 1.37232 1.03548 0.86728 0.81104 0.84210 0.79747 1.19246 1.19994 1.15913 0.91503 0.93898 0.92685 0.92334 0.88058 0.90438 0.90822 0.91101 0.85970 0.89800 0.90346 0.87767 0.89135 0.89221 0.89575 0.92447 0.91439 0.90281 0.88608 0.88518 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.32 37.16 0.35 -0.93 16 2 C -0.10 -0.91 5.35 -27.88 -0.15 -1.05 16 3 C -0.03 -0.23 5.37 -101.17 -0.54 -0.77 16 4 C -0.13 -0.66 10.01 36.00 0.36 -0.30 16 5 C -0.23 -2.04 9.46 -37.81 -0.36 -2.40 16 6 C 0.57 6.59 7.59 -12.67 -0.10 6.49 16 7 O -0.54 -7.25 10.74 5.27 0.06 -7.20 16 8 N -0.64 -6.78 3.56 -178.83 -0.64 -7.42 16 9 C 0.10 0.79 8.33 -8.50 -0.07 0.72 16 10 C -0.14 -1.48 7.15 -26.22 -0.19 -1.67 16 11 C 0.12 1.34 4.26 -72.39 -0.31 1.03 16 12 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 13 C 0.12 1.49 5.25 -4.05 -0.02 1.47 16 14 N -0.62 -8.47 2.88 -181.58 -0.52 -8.99 16 15 C 0.08 0.83 10.30 59.85 0.62 1.44 16 16 C 0.53 9.31 7.68 -10.99 -0.08 9.22 16 17 O -0.51 -10.41 14.44 5.55 0.08 -10.33 16 18 C -0.12 -2.32 4.66 36.00 0.17 -2.15 16 19 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 20 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.09 2.76 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 24 Si 0.86 21.61 27.74 -169.99 -4.71 16.89 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 28 H 0.07 0.79 6.25 -51.93 -0.32 0.47 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.10 1.13 5.92 -51.93 -0.31 0.82 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 36 H 0.12 0.87 7.99 -52.49 -0.42 0.45 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 1.30 7.76 -51.93 -0.40 0.89 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 42 H 0.09 1.27 7.22 -51.93 -0.37 0.90 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 45 H 0.08 0.82 6.29 -51.93 -0.33 0.49 16 46 H 0.10 1.75 8.11 -51.91 -0.42 1.33 16 47 H 0.10 1.71 7.40 -51.92 -0.38 1.33 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -33.75 400.89 -8.99 -42.74 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.97 Total: 0.23 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -0.11 Total: -0.79 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -0.38 Total: -42.04 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.14 Total: -17.53 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.75 -8.99 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739775550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.177 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds