Wall clock time and date at job start Sat Apr 11 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46926 * 2 1 4 4 C 1.50699 * 120.00073 * 263.01514 * 3 2 1 5 5 C 1.32991 * 119.99902 * 83.01838 * 3 2 1 6 6 C 1.47099 * 120.00270 * 353.43397 * 5 3 2 7 7 O 1.21612 * 119.99708 * 2.67851 * 6 5 3 8 8 N 1.34771 * 120.00304 * 182.67014 * 6 5 3 9 9 C 1.47075 * 136.05748 * 354.43133 * 8 6 5 10 10 C 1.53490 * 87.98486 * 152.91398 * 9 8 6 11 11 C 1.47071 * 136.05923 * 174.47976 * 8 6 5 12 12 H 1.09003 * 113.46674 * 92.25054 * 11 8 6 13 13 C 1.52995 * 113.46850 * 321.86752 * 11 8 6 14 14 N 1.46490 * 109.47461 * 174.25987 * 13 11 8 15 15 C 1.46504 * 120.00024 * 267.83922 * 14 13 11 16 16 C 1.34780 * 120.00363 * 87.56040 * 14 13 11 17 17 O 1.21288 * 119.99391 * 0.02562 * 16 14 13 18 18 C 1.50695 * 120.00507 * 180.02562 * 16 14 13 19 19 S 1.80993 * 109.47335 * 180.02562 * 18 16 14 20 20 C 1.76202 * 100.00438 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99376 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00397 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99891 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00174 * 359.97438 * 22 20 19 25 25 H 1.48509 * 109.46991 * 89.99900 * 24 22 20 26 26 H 1.48493 * 109.47537 * 210.00070 * 24 22 20 27 27 H 1.48506 * 109.46930 * 330.00325 * 24 22 20 28 28 H 1.08995 * 109.47114 * 300.00118 * 1 2 3 29 29 H 1.09006 * 109.47006 * 60.00032 * 1 2 3 30 30 H 1.09000 * 109.46944 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47509 * 240.00096 * 2 1 3 32 32 H 1.08997 * 109.46939 * 119.99840 * 2 1 3 33 33 H 1.09003 * 109.47303 * 270.00577 * 4 3 2 34 34 H 1.09006 * 109.47126 * 30.00053 * 4 3 2 35 35 H 1.08991 * 109.47366 * 150.00061 * 4 3 2 36 36 H 1.08000 * 119.99689 * 173.43954 * 5 3 2 37 37 H 1.09000 * 113.46605 * 267.69142 * 9 8 6 38 38 H 1.08996 * 113.46545 * 38.07188 * 9 8 6 39 39 H 1.09001 * 114.20487 * 272.48165 * 10 9 8 40 40 H 1.09001 * 114.20949 * 139.65513 * 10 9 8 41 41 H 1.09004 * 109.47296 * 54.25627 * 13 11 8 42 42 H 1.09004 * 109.46792 * 294.26268 * 13 11 8 43 43 H 1.08998 * 109.47078 * 273.74025 * 15 14 13 44 44 H 1.08998 * 109.47071 * 33.74556 * 15 14 13 45 45 H 1.09002 * 109.46814 * 153.74351 * 15 14 13 46 46 H 1.09002 * 109.46832 * 300.00166 * 18 16 14 47 47 H 1.08999 * 109.47434 * 59.99792 * 18 16 14 48 48 H 0.97004 * 119.99517 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4331 2.0784 -1.2954 5 6 2.1219 2.0944 1.1432 6 6 1.5974 1.5075 2.3859 7 8 1.1259 0.3865 2.3771 8 7 1.6394 2.2118 3.5341 9 6 2.1985 3.5021 3.9650 10 6 1.1026 3.5569 5.0384 11 6 1.1473 2.0282 4.9078 12 1 1.8736 1.5561 5.5695 13 6 -0.2320 1.3700 4.9779 14 7 -0.5761 1.1049 6.3770 15 6 -0.2486 -0.1898 6.9792 16 6 -1.1889 2.0542 7.1118 17 8 -1.4559 3.1277 6.6145 18 6 -1.5424 1.7817 8.5511 19 16 -2.3494 3.2383 9.2604 20 6 -2.6447 2.6579 10.8976 21 1 -2.3397 1.6611 11.1803 22 6 -3.2692 3.4815 11.8239 23 7 -3.4893 3.0479 13.0471 24 14 -3.7961 5.2056 11.3351 25 1 -5.1827 5.1678 10.8047 26 1 -3.7448 6.0946 12.5235 27 1 -2.8797 5.7252 10.2884 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.4914 1.8969 -1.4828 34 1 1.8429 1.6622 -2.1119 35 1 2.2547 3.1515 -1.2285 36 1 2.5798 3.0724 1.1592 37 1 3.2050 3.4236 4.3760 38 1 2.1104 4.2862 3.2130 39 1 0.1689 4.0071 4.7012 40 1 1.4410 3.9331 6.0038 41 1 -0.2155 0.4315 4.4237 42 1 -0.9754 2.0368 4.5409 43 1 -1.0519 -0.8982 6.7769 44 1 0.6820 -0.5640 6.5525 45 1 -0.1323 -0.0704 8.0564 46 1 -2.2200 0.9296 8.6038 47 1 -0.6348 1.5594 9.1124 48 1 -3.9254 3.6237 13.6946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739775550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:16 Heat of formation + Delta-G solvation = -32.809541 kcal Electronic energy + Delta-G solvation = -27315.778672 eV Core-core repulsion = 23498.313461 eV Total energy + Delta-G solvation = -3817.465211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.78720 -40.65610 -39.37756 -36.62786 -36.55317 -34.65984 -32.48511 -31.80004 -30.73789 -29.32989 -28.57030 -27.85117 -27.30844 -24.78121 -24.35480 -23.28592 -20.79959 -20.52587 -19.56769 -19.13761 -18.28950 -18.04518 -17.37128 -17.11082 -17.05569 -16.42245 -16.24709 -15.81434 -15.60411 -15.36769 -14.93602 -14.75190 -14.47733 -14.29604 -14.17364 -14.10986 -13.73165 -13.64410 -13.62056 -13.36332 -13.34928 -13.20844 -13.10210 -13.01892 -12.85132 -12.81772 -12.58910 -12.51635 -11.94454 -11.85543 -11.74750 -11.59164 -11.16054 -10.93710 -10.51054 -10.39253 -10.14353 -9.85966 -9.51912 -8.97966 -8.50290 -6.20830 0.39901 0.97995 1.32679 1.44664 1.51406 1.53738 1.76224 2.18775 2.26030 2.30505 2.69932 2.87942 3.35085 3.58066 3.60221 3.81854 3.87121 3.96592 4.06834 4.13196 4.15977 4.26149 4.39870 4.44065 4.45273 4.47014 4.52928 4.54942 4.59656 4.64834 4.67569 4.71086 4.82642 4.86713 4.87932 4.97505 5.02571 5.09795 5.24853 5.30069 5.37166 5.45010 5.52381 5.71510 5.71874 6.12653 6.21114 6.77508 6.94774 7.07219 7.20595 8.61998 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025195 B = 0.002169 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.045433 B =12906.106136 C =13335.457175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C -0.022 4.022 4 C -0.124 4.124 5 C -0.241 4.241 6 C 0.561 3.439 7 O -0.565 6.565 8 N -0.643 5.643 9 C 0.110 3.890 10 C -0.141 4.141 11 C 0.117 3.883 12 H 0.102 0.898 13 C 0.123 3.877 14 N -0.607 5.607 15 C 0.071 3.929 16 C 0.534 3.466 17 O -0.547 6.547 18 C -0.107 4.107 19 S -0.170 6.170 20 C -0.529 4.529 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.264 1.264 26 H -0.260 1.260 27 H -0.234 1.234 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.106 0.894 47 H 0.114 0.886 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.659 -3.209 -27.837 32.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.138 4.138 3 C -0.024 4.024 4 C -0.180 4.180 5 C -0.262 4.262 6 C 0.356 3.644 7 O -0.448 6.448 8 N -0.378 5.378 9 C -0.012 4.012 10 C -0.179 4.179 11 C 0.013 3.987 12 H 0.120 0.880 13 C 0.000 4.000 14 N -0.342 5.342 15 C -0.071 4.071 16 C 0.321 3.679 17 O -0.424 6.424 18 C -0.258 4.258 19 S 0.057 5.943 20 C -0.676 4.676 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.184 1.184 27 H -0.158 1.158 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.161 0.839 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.124 0.876 47 H 0.132 0.868 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.957 -2.331 -28.600 32.833 hybrid contribution -0.272 -0.935 1.370 1.680 sum 15.685 -3.265 -27.230 31.594 Atomic orbital electron populations 1.21516 0.94733 1.01550 1.00853 1.20907 0.96612 0.93322 1.03008 1.22879 0.89089 0.95083 0.95360 1.21061 1.03114 1.00999 0.92864 1.22330 1.09306 1.03305 0.91239 1.18648 0.78648 0.83854 0.83202 1.90716 1.48525 1.19558 1.85966 1.49773 1.56585 1.23359 1.08131 1.23123 0.98065 0.84285 0.95711 1.23359 0.99908 0.94194 1.00445 1.23117 0.95304 0.97364 0.82964 0.88037 1.21486 0.95550 1.01584 0.81415 1.47727 1.59237 1.15657 1.11561 1.22091 1.02351 0.82894 0.99771 1.20005 0.76900 0.83770 0.87198 1.90669 1.53973 1.25156 1.72592 1.23286 1.04831 1.02281 0.95380 1.84637 1.77926 1.21425 1.10309 1.22463 1.45219 1.03819 0.96127 0.92057 1.25576 0.94180 1.02337 0.94008 1.70023 1.41978 1.38883 1.04610 0.85858 0.80636 0.79922 0.79893 1.18929 1.18399 1.15758 0.94153 0.92486 0.92795 0.90388 0.90434 0.88894 0.89967 0.90126 0.83859 0.87496 0.88424 0.90030 0.89334 0.89344 0.91836 0.91365 0.89180 0.89792 0.87568 0.86803 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.32 71.98 0.67 -1.77 16 2 C -0.10 -1.73 5.35 29.85 0.16 -1.57 16 3 C -0.02 -0.32 5.37 -17.62 -0.09 -0.41 16 4 C -0.12 -0.91 10.01 71.24 0.71 -0.20 16 5 C -0.24 -3.93 9.46 23.43 0.22 -3.71 16 6 C 0.56 12.56 7.59 86.57 0.66 13.22 16 7 O -0.57 -15.49 10.74 -4.07 -0.04 -15.54 16 8 N -0.64 -12.94 3.56 -837.95 -2.99 -15.93 16 9 C 0.11 1.55 8.33 83.18 0.69 2.24 16 10 C -0.14 -2.90 7.15 30.93 0.22 -2.68 16 11 C 0.12 2.52 4.26 41.79 0.18 2.70 16 12 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 13 C 0.12 3.17 5.25 86.38 0.45 3.62 16 14 N -0.61 -16.07 2.88 -846.77 -2.44 -18.50 16 15 C 0.07 1.37 10.30 127.77 1.32 2.68 16 16 C 0.53 18.45 7.68 87.65 0.67 19.12 16 17 O -0.55 -22.29 14.44 -3.05 -0.04 -22.33 16 18 C -0.11 -4.03 4.66 71.23 0.33 -3.69 16 19 S -0.17 -8.44 18.55 -56.49 -1.05 -9.49 16 20 C -0.53 -30.56 10.04 67.95 0.68 -29.87 16 21 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 22 C 0.04 2.59 5.50 84.86 0.47 3.05 16 23 N -0.92 -55.63 13.97 21.65 0.30 -55.33 16 24 Si 0.91 44.65 27.74 68.60 1.90 46.56 16 25 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.23 -11.28 6.74 99.48 0.67 -10.61 16 28 H 0.04 0.98 6.25 -2.39 -0.01 0.96 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 32 H 0.08 1.73 5.92 -2.39 -0.01 1.72 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 0.49 8.12 -2.38 -0.02 0.48 16 35 H 0.08 0.47 8.07 -2.39 -0.02 0.46 16 36 H 0.14 1.64 7.99 -2.91 -0.02 1.62 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 2.07 7.76 -2.39 -0.02 2.05 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.09 2.32 7.00 -2.38 -0.02 2.30 16 42 H 0.06 1.94 7.22 -2.38 -0.02 1.92 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 45 H 0.08 1.57 6.29 -2.39 -0.02 1.55 16 46 H 0.11 3.79 8.11 -2.39 -0.02 3.77 16 47 H 0.11 3.90 7.40 -2.40 -0.02 3.88 16 48 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -74.64 400.89 3.89 -70.75 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.90 Total: 17.08 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 7.34 Total: 2.74 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -5.12 Total: -89.76 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.09 Total: -37.87 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.56 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.05 Total: -9.49 kcal Total: -74.64 3.89 -70.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739775550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.936 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds