Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99985 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00161 * 180.02562 * 4 3 2 7 7 C 1.47207 * 126.70076 * 0.02562 * 6 4 3 8 8 C 1.53759 * 106.40750 * 211.31291 * 7 6 4 9 9 H 1.08998 * 112.06930 * 103.42269 * 8 7 6 10 10 C 1.54318 * 109.07414 * 229.21121 * 8 7 6 11 11 N 1.48114 * 104.70810 * 136.26140 * 10 8 7 12 12 C 1.34784 * 127.84371 * 140.21795 * 11 10 8 13 13 O 1.21277 * 119.99647 * 179.97438 * 12 11 10 14 14 C 1.50698 * 119.99808 * 0.02562 * 12 11 10 15 15 S 1.81001 * 109.47045 * 180.02562 * 14 12 11 16 16 C 1.76197 * 100.00180 * 179.97438 * 15 14 12 17 17 H 1.08008 * 119.99941 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00140 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99996 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00149 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46958 * 59.99685 * 20 18 16 22 22 H 1.48501 * 109.47213 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46922 * 299.99999 * 20 18 16 24 24 C 1.48109 * 104.31508 * 320.21639 * 11 10 8 25 25 C 1.54316 * 104.70903 * 39.78019 * 24 11 10 26 26 C 1.52995 * 112.07445 * 97.96433 * 25 24 11 27 27 C 1.47194 * 126.70476 * 179.71027 * 6 4 3 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 30 30 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 1.08997 * 110.07101 * 330.55291 * 7 6 4 36 36 H 1.09004 * 110.06531 * 92.01719 * 7 6 4 37 37 H 1.08995 * 110.38775 * 255.06567 * 10 8 7 38 38 H 1.08999 * 110.39291 * 17.45624 * 10 8 7 39 39 H 1.09005 * 109.47003 * 299.99805 * 14 12 11 40 40 H 1.08998 * 109.47609 * 59.99576 * 14 12 11 41 41 H 0.97001 * 120.00094 * 179.97438 * 19 18 16 42 42 H 1.09001 * 110.38845 * 280.97723 * 24 11 10 43 43 H 1.08993 * 110.39785 * 158.59257 * 24 11 10 44 44 H 1.09008 * 109.46981 * 302.40918 * 26 25 24 45 45 H 1.09004 * 109.47589 * 62.40457 * 26 25 24 46 46 H 1.09003 * 109.47447 * 182.41100 * 26 25 24 47 47 H 1.08997 * 110.07179 * 267.92569 * 27 6 4 48 48 H 1.08996 * 110.06943 * 29.45605 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 3.6387 3.9618 0.0014 8 6 4.6237 4.8597 -0.7653 9 1 4.2754 5.0818 -1.7740 10 6 4.9020 6.1288 0.0674 11 7 6.3668 6.3268 -0.0271 12 6 7.0370 7.4879 -0.1656 13 8 8.2482 7.4852 -0.2285 14 6 6.2815 8.7896 -0.2411 15 16 7.4527 10.1573 -0.4252 16 6 6.3310 11.5146 -0.4870 17 1 5.2675 11.3400 -0.4155 18 6 6.8140 12.8082 -0.6274 19 7 8.1100 13.0211 -0.7140 20 14 5.6247 14.2474 -0.6922 21 1 4.8350 14.2937 0.5645 22 1 6.3868 15.5127 -0.8456 23 1 4.7071 14.0796 -1.8476 24 6 6.9279 4.9592 0.0651 25 6 5.9666 4.0843 -0.7667 26 6 6.4913 3.8402 -2.1830 27 6 5.6828 2.7815 0.0052 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.6715 3.9531 -0.5012 36 1 3.5247 4.3187 1.0250 37 1 4.3751 6.9838 -0.3560 38 1 4.6058 5.9748 1.1050 39 1 5.6087 8.7700 -1.0986 40 1 5.7023 8.9272 0.6719 41 1 8.4476 13.9251 -0.8126 42 1 6.9444 4.6247 1.1023 43 1 7.9312 4.9308 -0.3599 44 1 6.6519 4.7966 -2.6808 45 1 7.4334 3.2942 -2.1325 46 1 5.7624 3.2561 -2.7449 47 1 6.0459 2.8640 1.0296 48 1 6.1603 1.9389 -0.4947 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740128131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = -73.665065 kcal Electronic energy + Delta-G solvation = -27307.680001 eV Core-core repulsion = 23488.443162 eV Total energy + Delta-G solvation = -3819.236839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26099 -39.58155 -38.24925 -35.48744 -34.78500 -32.97906 -32.46148 -31.19639 -29.59525 -28.88387 -26.86264 -26.29849 -25.62819 -25.14675 -22.55696 -22.03596 -20.07648 -19.43135 -19.05733 -17.67354 -17.36610 -16.77405 -16.49406 -16.02821 -15.79310 -15.36874 -15.32494 -14.83421 -14.52034 -14.20887 -14.02781 -13.84103 -13.73410 -13.47929 -13.16267 -12.94990 -12.69126 -12.57568 -12.46056 -12.29272 -12.15725 -12.14193 -11.95776 -11.77714 -11.61224 -11.17052 -11.16101 -11.12026 -11.09050 -11.06689 -11.03574 -10.79158 -10.15261 -9.86015 -9.46705 -9.11198 -9.09050 -8.67112 -8.27872 -6.54234 -6.24580 -3.95876 2.27426 2.53210 2.83578 2.98997 3.20799 3.22571 3.26588 3.54015 3.75642 3.95143 4.17175 4.30156 4.32939 4.45240 4.56107 4.60519 4.70681 4.72186 4.83471 4.92571 4.95866 5.05216 5.10421 5.11783 5.19062 5.26901 5.31643 5.35455 5.35622 5.41468 5.48419 5.58539 5.59228 5.63292 5.66440 5.69835 5.73062 5.76345 5.84074 5.87475 5.94286 5.98697 6.07054 6.24553 7.13633 7.55683 7.62712 7.79832 8.31535 8.48262 9.20411 10.82730 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.002115 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.895942 B =13234.699259 C =14309.574775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.137 4.137 4 C 0.530 3.470 5 O -0.540 6.540 6 N -0.619 5.619 7 C 0.106 3.894 8 C -0.109 4.109 9 H 0.103 0.897 10 C 0.109 3.891 11 N -0.629 5.629 12 C 0.555 3.445 13 O -0.513 6.513 14 C -0.147 4.147 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.116 3.884 25 C -0.083 4.083 26 C -0.128 4.128 27 C 0.116 3.884 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.084 -23.187 1.062 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.176 4.176 4 C 0.320 3.680 5 O -0.417 6.417 6 N -0.353 5.353 7 C -0.018 4.018 8 C -0.129 4.129 9 H 0.122 0.878 10 C -0.015 4.015 11 N -0.366 5.366 12 C 0.344 3.656 13 O -0.387 6.387 14 C -0.297 4.297 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.008 4.008 25 C -0.085 4.085 26 C -0.185 4.185 27 C -0.007 4.007 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.782 -23.585 0.950 26.843 hybrid contribution -2.243 1.103 0.064 2.500 sum -15.025 -22.482 1.013 27.059 Atomic orbital electron populations 1.21794 0.95333 1.02061 1.01861 1.21294 0.95375 0.94550 1.03584 1.21720 0.91203 1.00290 1.04426 1.20481 0.90139 0.81871 0.75522 1.90717 1.70546 1.30476 1.49986 1.48599 1.07430 1.05737 1.73571 1.22251 0.97213 0.81529 1.00763 1.23014 0.94588 0.94855 1.00490 0.87833 1.22468 0.82122 0.97371 0.99569 1.49004 1.07065 1.05648 1.74846 1.20019 0.87532 0.83211 0.74861 1.90721 1.13668 1.85982 1.48288 1.23506 1.04557 0.96876 1.04792 1.85432 1.08187 0.94090 1.95575 1.22806 0.94416 0.92699 1.58535 0.90975 1.24992 0.95692 0.98353 0.94517 1.70005 1.11932 1.22096 1.46172 0.86224 0.80188 0.80304 0.78781 1.19923 1.20795 1.19935 1.22406 0.98141 0.81180 0.99042 1.22307 0.95186 0.94245 0.96796 1.21680 1.00985 1.02374 0.93500 1.22177 0.81019 0.97275 1.00223 0.92340 0.92623 0.92621 0.91239 0.91232 0.88860 0.88846 0.89975 0.90491 0.89446 0.90617 0.89284 0.89268 0.92089 0.90985 0.89392 0.91565 0.91857 0.92308 0.90819 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.11 -0.72 5.22 -26.73 -0.14 -0.86 16 3 C -0.14 -0.81 4.68 -27.88 -0.13 -0.94 16 4 C 0.53 4.96 7.88 -10.98 -0.09 4.87 16 5 O -0.54 -7.19 16.21 5.56 0.09 -7.10 16 6 N -0.62 -4.97 3.32 -171.44 -0.57 -5.54 16 7 C 0.11 0.59 6.38 -3.26 -0.02 0.57 16 8 C -0.11 -0.78 3.72 -88.44 -0.33 -1.11 16 9 H 0.10 0.71 7.90 -51.93 -0.41 0.30 16 10 C 0.11 0.96 6.46 -2.46 -0.02 0.95 16 11 N -0.63 -8.28 3.31 -169.46 -0.56 -8.84 16 12 C 0.55 10.22 7.93 -10.98 -0.09 10.14 16 13 O -0.51 -11.59 16.13 5.56 0.09 -11.50 16 14 C -0.15 -2.88 5.13 36.00 0.18 -2.70 16 15 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 16 C -0.54 -14.98 9.50 30.94 0.29 -14.68 16 17 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 20 Si 0.92 21.02 29.55 -169.99 -5.02 15.99 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.12 1.26 6.21 -2.47 -0.02 1.24 16 25 C -0.08 -0.71 1.09 -152.17 -0.17 -0.87 16 26 C -0.13 -1.12 8.59 37.15 0.32 -0.80 16 27 C 0.12 0.98 6.24 -3.10 -0.02 0.96 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.09 0.41 7.86 -51.93 -0.41 0.00 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.31 7.31 -51.93 -0.38 -0.07 16 36 H 0.08 0.37 7.10 -51.93 -0.37 0.00 16 37 H 0.09 0.75 7.30 -51.93 -0.38 0.38 16 38 H 0.08 0.56 7.15 -51.93 -0.37 0.19 16 39 H 0.09 1.60 7.95 -51.91 -0.41 1.19 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.07 0.70 7.14 -51.93 -0.37 0.33 16 43 H 0.09 1.09 7.63 -51.93 -0.40 0.70 16 44 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.60 7.10 -51.93 -0.37 0.23 16 48 H 0.08 0.80 7.65 -51.93 -0.40 0.40 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -35.90 397.61 -9.43 -45.33 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -8.03 Total: -3.83 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 0.06 Total: -1.60 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.40 Total: -39.47 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.18 Total: -18.61 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.90 -9.43 -45.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740128131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.339 kcal (2) G-P(sol) polarization free energy of solvation -35.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds