Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00485 * 2 1 4 4 C 1.50703 * 119.99608 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47392 * 0.02562 * 4 2 1 6 6 C 1.53002 * 109.47239 * 240.00200 * 4 2 1 7 7 C 1.50705 * 109.46929 * 120.00413 * 4 2 1 8 8 O 1.21286 * 119.99804 * 359.97438 * 7 4 2 9 9 N 1.34774 * 120.00141 * 180.02562 * 7 4 2 10 10 C 1.46499 * 119.99884 * 180.02562 * 9 7 4 11 11 H 1.08998 * 112.85087 * 336.18504 * 10 9 7 12 12 C 1.53777 * 113.61486 * 107.49951 * 10 9 7 13 13 C 1.53785 * 87.08241 * 139.97730 * 12 10 9 14 14 H 1.09002 * 113.61570 * 220.01842 * 13 12 10 15 15 N 1.46500 * 113.68813 * 89.12417 * 13 12 10 16 16 C 1.34781 * 119.99985 * 105.94035 * 15 13 12 17 17 O 1.21280 * 119.99799 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99932 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46939 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99859 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00276 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99756 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00162 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99867 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46886 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47049 * 120.00173 * 24 22 20 27 27 H 1.48498 * 109.47209 * 240.00389 * 24 22 20 28 28 C 1.53781 * 87.08241 * 334.56547 * 13 12 10 29 29 H 1.07995 * 120.00607 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99617 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47434 * 270.00138 * 3 2 1 32 32 H 1.09009 * 109.46843 * 29.99685 * 3 2 1 33 33 H 1.09002 * 109.47471 * 149.99475 * 3 2 1 34 34 H 1.08995 * 109.47434 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.46801 * 299.99799 * 5 4 2 36 36 H 1.09001 * 109.47215 * 59.99539 * 5 4 2 37 37 H 1.09001 * 109.46875 * 300.00037 * 6 4 2 38 38 H 1.08994 * 109.46835 * 60.00337 * 6 4 2 39 39 H 1.08998 * 109.46655 * 180.02562 * 6 4 2 40 40 H 0.97004 * 120.00019 * 359.97438 * 9 7 4 41 41 H 1.08999 * 113.61947 * 25.43156 * 12 10 9 42 42 H 1.08997 * 113.61348 * 254.52371 * 12 10 9 43 43 H 0.96998 * 120.00149 * 285.93056 * 15 13 12 44 44 H 1.08997 * 109.46730 * 299.99650 * 18 16 15 45 45 H 1.08994 * 109.46768 * 60.00057 * 18 16 15 46 46 H 0.96996 * 120.00425 * 179.97438 * 23 22 20 47 47 H 1.09000 * 113.61578 * 139.97748 * 28 13 12 48 48 H 1.08997 * 113.61673 * 270.88717 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 1.0692 -2.4680 0.0005 6 6 2.9430 -1.3858 1.2499 7 6 2.9299 -1.3855 -1.2298 8 8 2.9347 -0.4730 -2.0288 9 7 3.6986 -2.4718 -1.4430 10 6 4.5413 -2.5496 -2.6388 11 1 4.1806 -1.9205 -3.4525 12 6 6.0418 -2.3824 -2.3469 13 6 6.2869 -3.4913 -3.3838 14 1 7.0692 -4.1935 -3.0956 15 7 6.4459 -2.9928 -4.7522 16 6 7.6662 -2.9710 -5.3240 17 8 8.6327 -3.3636 -4.7055 18 6 7.8295 -2.4588 -6.7319 19 16 9.5724 -2.5560 -7.2108 20 6 9.4757 -1.9146 -8.8490 21 1 8.5226 -1.6066 -9.2530 22 6 10.6246 -1.8042 -9.6200 23 7 11.7862 -2.1791 -9.1275 24 14 10.5221 -1.1249 -11.3571 25 1 9.1124 -0.7790 -11.6709 26 1 11.3654 0.0928 -11.4630 27 1 11.0068 -2.1480 -12.3181 28 6 4.8661 -3.9894 -3.0708 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5399 0.9354 0.0004 31 1 2.2453 1.6197 -1.0277 32 1 1.4744 2.0647 0.5138 33 1 3.0160 1.1747 0.5139 34 1 1.6141 -3.4120 0.0004 35 1 0.4422 -2.4101 0.8902 36 1 0.4428 -2.4105 -0.8897 37 1 3.6514 -0.5573 1.2495 38 1 2.3163 -1.3277 2.1398 39 1 3.4882 -2.3296 1.2500 40 1 3.6945 -3.2018 -0.8042 41 1 6.3234 -2.6636 -1.3322 42 1 6.4388 -1.4116 -2.6437 43 1 5.6729 -2.6786 -5.2468 44 1 7.2313 -3.0661 -7.4111 45 1 7.4966 -1.4221 -6.7822 46 1 12.5891 -2.1023 -9.6663 47 1 4.3139 -4.3159 -3.9520 48 1 4.8261 -4.7099 -2.2539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744367406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -69.843647 kcal Electronic energy + Delta-G solvation = -26677.430990 eV Core-core repulsion = 22858.359860 eV Total energy + Delta-G solvation = -3819.071130 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73895 -40.87679 -39.29253 -37.54972 -35.34199 -34.59964 -33.87407 -32.39312 -30.54750 -29.43156 -27.69546 -26.94041 -26.74783 -25.94689 -24.31674 -22.24461 -21.68638 -20.76711 -19.85596 -19.03851 -18.12287 -17.50040 -17.33651 -17.10261 -16.89264 -16.48719 -16.21418 -16.10561 -15.92483 -15.47444 -15.04935 -14.80924 -14.63993 -14.36675 -14.10604 -13.97007 -13.56985 -13.41339 -13.33443 -13.23950 -13.17385 -13.09972 -13.05420 -12.96797 -12.92064 -12.58968 -12.54695 -11.97004 -11.87234 -11.73360 -11.67134 -11.53979 -11.17027 -10.99548 -10.74383 -10.29369 -10.17128 -9.98740 -9.89112 -8.67809 -8.36151 -6.13985 1.25476 1.26505 1.40321 1.45520 1.56299 1.57259 1.63775 2.22253 2.26808 2.30103 2.97987 3.30115 3.38613 3.51922 3.55727 3.77512 3.86711 3.93585 3.94856 4.04220 4.10356 4.28640 4.32725 4.49096 4.58672 4.64739 4.70800 4.71123 4.76159 4.78157 4.82961 4.86047 4.87253 4.89739 5.00823 5.01242 5.08662 5.15223 5.25841 5.30171 5.41072 5.44607 5.63149 5.70903 5.94040 6.18879 6.45674 6.58508 7.05348 7.21419 7.28563 8.73328 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.001814 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.858791 B =15427.731948 C =16107.107970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.115 4.115 4 C -0.045 4.045 5 C -0.141 4.141 6 C -0.137 4.137 7 C 0.520 3.480 8 O -0.578 6.578 9 N -0.703 5.703 10 C 0.126 3.874 11 H 0.096 0.904 12 C -0.162 4.162 13 C 0.113 3.887 14 H 0.094 0.906 15 N -0.699 5.699 16 C 0.538 3.462 17 O -0.562 6.562 18 C -0.132 4.132 19 S -0.148 6.148 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.910 5.910 24 Si 0.999 3.001 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.272 1.272 28 C -0.124 4.124 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.414 0.586 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.271 0.729 47 H 0.093 0.907 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.056 -2.576 22.879 35.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.115 4.115 3 C -0.172 4.172 4 C -0.049 4.049 5 C -0.198 4.198 6 C -0.194 4.194 7 C 0.307 3.693 8 O -0.457 6.457 9 N -0.354 5.354 10 C 0.020 3.980 11 H 0.114 0.886 12 C -0.202 4.202 13 C 0.007 3.993 14 H 0.112 0.888 15 N -0.352 5.352 16 C 0.324 3.676 17 O -0.439 6.439 18 C -0.283 4.283 19 S 0.079 5.921 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.198 1.198 28 C -0.163 4.163 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.255 0.745 41 H 0.128 0.872 42 H 0.068 0.932 43 H 0.251 0.749 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.111 0.889 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.292 -2.612 23.324 34.504 hybrid contribution -0.790 1.055 -1.841 2.264 sum -26.082 -1.558 21.484 33.827 Atomic orbital electron populations 1.23997 0.94891 1.03134 1.01327 1.21397 0.95432 0.94391 1.00284 1.20811 0.99993 0.94937 1.01460 1.19899 0.95777 0.95679 0.93510 1.21979 0.98499 0.95917 1.03440 1.21881 0.99125 1.03087 0.95351 1.21016 0.79429 0.81549 0.87259 1.90698 1.67321 1.39222 1.48421 1.45840 1.43731 1.20906 1.24968 1.22457 0.88757 0.98225 0.88540 0.88628 1.23959 0.96521 0.99064 1.00664 1.21764 0.99598 0.96824 0.81136 0.88805 1.45486 1.08681 1.65614 1.15438 1.20022 0.83246 0.76978 0.87322 1.90685 1.40196 1.48056 1.65007 1.23388 1.02998 1.05383 0.96538 1.85530 1.04475 1.84591 1.17511 1.23240 0.97523 1.49063 0.99642 0.90013 1.26129 0.93932 0.95192 1.03931 1.70178 0.99430 1.45981 1.39097 0.84904 0.78989 0.77872 0.76168 1.18155 1.19952 1.19761 1.23657 0.92925 0.95841 1.03858 0.86327 0.88064 0.92960 0.91105 0.92390 0.89773 0.89454 0.92592 0.93099 0.89841 0.89829 0.74531 0.87205 0.93230 0.74893 0.87031 0.87607 0.91955 0.88858 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 13.29 67.78 0.90 -1.60 16 2 C -0.11 -1.75 4.42 -16.49 -0.07 -1.82 16 3 C -0.12 -2.02 9.13 71.23 0.65 -1.37 16 4 C -0.05 -0.53 0.72 -53.67 -0.04 -0.57 16 5 C -0.14 -0.90 7.02 71.98 0.51 -0.39 16 6 C -0.14 -1.08 8.19 71.98 0.59 -0.49 16 7 C 0.52 9.14 6.37 87.66 0.56 9.70 16 8 O -0.58 -15.88 14.30 -3.05 -0.04 -15.92 16 9 N -0.70 -8.30 5.14 -440.02 -2.26 -10.56 16 10 C 0.13 1.90 4.13 45.52 0.19 2.09 16 11 H 0.10 1.90 7.46 -2.39 -0.02 1.88 16 12 C -0.16 -3.05 7.68 31.12 0.24 -2.81 16 13 C 0.11 2.28 4.30 45.52 0.20 2.48 16 14 H 0.09 2.25 7.50 -2.39 -0.02 2.23 16 15 N -0.70 -17.47 5.27 -440.02 -2.32 -19.79 16 16 C 0.54 19.86 7.85 87.66 0.69 20.55 16 17 O -0.56 -25.83 15.48 -3.03 -0.05 -25.87 16 18 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 19 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 20 C -0.55 -31.62 9.50 67.96 0.65 -30.97 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 24 Si 1.00 44.14 29.55 68.60 2.03 46.17 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 C -0.12 -1.37 7.57 31.12 0.24 -1.14 16 29 H 0.12 1.09 5.69 -2.91 -0.02 1.07 16 30 H 0.10 1.21 8.04 -2.91 -0.02 1.18 16 31 H 0.05 1.19 7.38 -2.39 -0.02 1.18 16 32 H 0.07 1.00 8.06 -2.38 -0.02 0.98 16 33 H 0.06 0.98 6.63 -2.39 -0.02 0.97 16 34 H 0.08 0.18 7.56 -2.39 -0.02 0.17 16 35 H 0.09 0.33 7.50 -2.39 -0.02 0.31 16 36 H 0.05 0.49 7.50 -2.39 -0.02 0.47 16 37 H 0.05 0.56 6.80 -2.39 -0.02 0.55 16 38 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.08 0.31 7.56 -2.39 -0.02 0.29 16 40 H 0.42 2.00 7.56 -92.71 -0.70 1.30 16 41 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.41 7.97 8.71 -92.71 -0.81 7.16 16 44 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 46 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 47 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.13 0.70 8.12 -2.39 -0.02 0.68 16 Total: -1.00 -83.91 403.72 2.14 -81.77 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.53 Total: 19.69 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 6.19 Total: -10.00 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -4.29 Total: -86.37 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.09 Total: -41.79 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -83.91 2.14 -81.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744367406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.926 kcal (2) G-P(sol) polarization free energy of solvation -83.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds