Wall clock time and date at job start Sat Apr 11 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50706 * 120.00012 * 2 1 4 4 C 1.32993 * 120.00101 * 179.97438 * 2 1 3 5 5 C 1.47103 * 119.99773 * 3.87762 * 4 2 1 6 6 O 1.21617 * 119.99870 * 354.19267 * 5 4 2 7 7 N 1.34777 * 119.99884 * 174.19416 * 5 4 2 8 8 C 1.46498 * 119.99736 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46954 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.47159 * 300.00127 * 9 8 7 11 11 N 1.46504 * 109.47256 * 60.00013 * 9 8 7 12 12 C 1.34772 * 120.00058 * 63.61937 * 11 9 8 13 13 O 1.21281 * 120.00104 * 5.38567 * 12 11 9 14 14 C 1.50704 * 120.00089 * 185.38984 * 12 11 9 15 15 S 1.80999 * 109.47302 * 179.97438 * 14 12 11 16 16 C 1.76194 * 99.99771 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00522 * 359.97438 * 16 15 14 18 18 C 1.38801 * 119.99761 * 180.02562 * 16 15 14 19 19 N 1.31633 * 119.99984 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00014 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46645 * 90.00338 * 20 18 16 22 22 H 1.48500 * 109.47016 * 210.00133 * 20 18 16 23 23 H 1.48497 * 109.46883 * 330.00264 * 20 18 16 24 24 C 1.53000 * 109.47284 * 180.02562 * 9 8 7 25 25 C 1.52995 * 117.51803 * 108.73930 * 24 9 8 26 26 C 1.52998 * 60.00374 * 107.48507 * 25 24 9 27 27 H 1.09004 * 109.47522 * 242.93800 * 1 2 3 28 28 H 1.09005 * 109.47171 * 2.93636 * 1 2 3 29 29 H 1.08999 * 109.47235 * 122.93448 * 1 2 3 30 30 H 1.09001 * 109.47064 * 269.99526 * 3 2 1 31 31 H 1.08998 * 109.47274 * 29.99599 * 3 2 1 32 32 H 1.08996 * 109.47158 * 149.99876 * 3 2 1 33 33 H 1.08000 * 120.00197 * 183.87693 * 4 2 1 34 34 H 0.96999 * 119.99979 * 0.02562 * 7 5 4 35 35 H 1.08993 * 109.47615 * 60.00271 * 8 7 5 36 36 H 1.09005 * 109.47093 * 299.99554 * 8 7 5 37 37 H 1.09004 * 109.46799 * 300.00063 * 10 9 8 38 38 H 1.08991 * 109.47244 * 59.99708 * 10 9 8 39 39 H 1.08999 * 109.47277 * 180.02562 * 10 9 8 40 40 H 0.97000 * 119.99501 * 243.61876 * 11 9 8 41 41 H 1.09000 * 109.47019 * 299.99855 * 14 12 11 42 42 H 1.09006 * 109.47092 * 59.99540 * 14 12 11 43 43 H 0.97001 * 119.99937 * 179.97438 * 19 18 16 44 44 H 1.09001 * 115.54766 * 323.03800 * 24 9 8 45 45 H 1.09004 * 117.49817 * 214.96685 * 25 24 9 46 46 H 1.08994 * 117.50200 * 359.97438 * 25 24 9 47 47 H 1.09005 * 117.49675 * 252.51915 * 26 25 24 48 48 H 1.08995 * 117.52457 * 107.47861 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1719 -1.1517 0.0005 5 6 1.4389 -2.4243 -0.0851 6 8 0.2233 -2.4293 -0.0498 7 7 2.1145 -3.5845 -0.2026 8 6 1.3845 -4.8518 -0.2872 9 6 2.3803 -6.0065 -0.4131 10 6 3.2229 -5.8179 -1.6762 11 7 3.2571 -6.0255 0.7605 12 6 2.7404 -6.2543 1.9840 13 8 1.5680 -6.5409 2.1033 14 6 3.6195 -6.1538 3.2040 15 16 2.6411 -6.5130 4.6838 16 6 3.8811 -6.3301 5.9221 17 1 4.8906 -6.0688 5.6411 18 6 3.5607 -6.5228 7.2588 19 7 4.4872 -6.3866 8.1839 20 14 1.8148 -6.9754 7.7450 21 1 1.6711 -8.4533 7.7545 22 1 1.5239 -6.4410 9.0996 23 1 0.8617 -6.3915 6.7673 24 6 1.6180 -7.3301 -0.5022 25 6 1.6063 -8.0497 -1.8523 26 6 2.4389 -8.6067 -0.6958 27 1 -0.3634 -0.4675 0.9152 28 1 -0.3634 1.0264 -0.0526 29 1 -0.3634 -0.5587 -0.8625 30 1 2.4422 1.6198 -1.0277 31 1 1.6714 2.0648 0.5138 32 1 3.2128 1.1748 0.5138 33 1 3.2501 -1.1528 0.0638 34 1 3.0841 -3.5805 -0.2303 35 1 0.7319 -4.8377 -1.1601 36 1 0.7846 -4.9864 0.6129 37 1 2.5706 -5.8039 -2.5494 38 1 3.7660 -4.8751 -1.6132 39 1 3.9321 -6.6408 -1.7662 40 1 4.2095 -5.8734 0.6568 41 1 4.4353 -6.8723 3.1241 42 1 4.0286 -5.1460 3.2751 43 1 4.2632 -6.5209 9.1181 44 1 0.7199 -7.3975 0.1119 45 1 0.7006 -8.5907 -2.1265 46 1 2.1415 -7.5801 -2.6776 47 1 3.5221 -8.5034 -0.7601 48 1 2.0812 -9.5138 -0.2088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746257642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:46 Heat of formation + Delta-G solvation = -36.738739 kcal Electronic energy + Delta-G solvation = -27714.802699 eV Core-core repulsion = 23897.167106 eV Total energy + Delta-G solvation = -3817.635593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63686 -39.49495 -37.75503 -35.91975 -35.00216 -33.55851 -32.43936 -31.13045 -28.83935 -28.53681 -27.91300 -26.66908 -25.60974 -23.46624 -22.47126 -21.20522 -20.80671 -19.45366 -18.73898 -17.90438 -17.17415 -16.55563 -16.43616 -15.97806 -15.39065 -15.11749 -14.96196 -14.88277 -14.44443 -14.27408 -14.07404 -13.79421 -13.73715 -13.37980 -13.05472 -12.79599 -12.74937 -12.68787 -12.55422 -12.39282 -12.04165 -11.92556 -11.76665 -11.72806 -11.45741 -11.26890 -11.20874 -11.00860 -10.61709 -10.52384 -10.28978 -9.84929 -9.63601 -9.44216 -9.32050 -9.05528 -8.99259 -8.87498 -8.49332 -6.90877 -6.29263 -4.00466 1.25682 2.71884 2.97732 3.11965 3.27036 3.28507 3.33367 3.51222 3.58662 3.88553 4.32620 4.34288 4.51997 4.59278 4.61065 4.64679 4.75525 4.92218 4.97023 5.02316 5.10063 5.11839 5.19958 5.23847 5.26883 5.41206 5.48202 5.51905 5.57073 5.58288 5.63145 5.64150 5.74815 5.75831 5.86404 5.93829 5.98698 6.00898 6.02614 6.24449 6.30771 6.36148 6.41485 6.56281 7.48614 7.60641 7.93818 8.25442 8.40891 8.51404 9.17223 10.80015 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007961 B = 0.003614 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.385342 B = 7746.402748 C =10265.235693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.033 4.033 3 C -0.127 4.127 4 C -0.236 4.236 5 C 0.544 3.456 6 O -0.541 6.541 7 N -0.722 5.722 8 C 0.115 3.885 9 C 0.200 3.800 10 C -0.159 4.159 11 N -0.731 5.731 12 C 0.537 3.463 13 O -0.508 6.508 14 C -0.124 4.124 15 S -0.139 6.139 16 C -0.522 4.522 17 H 0.087 0.913 18 C 0.096 3.904 19 N -0.881 5.881 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.149 4.149 25 C -0.184 4.184 26 C -0.165 4.165 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.396 0.604 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.398 0.602 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.121 0.879 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 7.743 -24.476 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.183 4.183 4 C -0.257 4.257 5 C 0.334 3.666 6 O -0.420 6.420 7 N -0.373 5.373 8 C -0.010 4.010 9 C 0.114 3.886 10 C -0.217 4.217 11 N -0.386 5.386 12 C 0.323 3.677 13 O -0.382 6.382 14 C -0.275 4.275 15 S 0.087 5.913 16 C -0.669 4.669 17 H 0.105 0.895 18 C -0.112 4.112 19 N -0.518 5.518 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.168 4.168 25 C -0.221 4.221 26 C -0.202 4.202 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.232 0.768 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.139 0.861 45 H 0.111 0.889 46 H 0.116 0.884 47 H 0.110 0.890 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.297 7.259 -24.041 25.329 hybrid contribution 1.966 0.066 0.434 2.015 sum -1.330 7.324 -23.607 24.753 Atomic orbital electron populations 1.21062 0.90784 1.01021 1.04518 1.22572 0.96963 0.94456 0.89534 1.21023 1.00201 0.94375 1.02739 1.22348 1.00016 0.92016 1.11348 1.18527 0.87410 0.84207 0.76473 1.90785 1.13773 1.87409 1.50047 1.45772 1.10064 1.06068 1.75419 1.21699 0.94254 0.81234 1.03793 1.19890 0.90014 0.93234 0.85498 1.22211 1.00383 1.02332 0.96765 1.46137 1.10892 1.75641 1.05895 1.20187 0.88527 0.75432 0.83603 1.90671 1.16874 1.44847 1.85768 1.23281 1.02240 1.05487 0.96476 1.84808 1.17221 1.92270 0.96971 1.22319 0.97134 1.55104 0.92364 0.89473 1.24705 0.97731 0.93531 0.95281 1.69939 1.33291 1.47442 1.01080 0.86746 0.85288 0.80198 0.79703 1.19217 1.19935 1.15911 1.22507 1.02630 0.91563 1.00128 1.23174 1.02688 1.04269 0.92013 1.22813 0.98084 0.97339 1.01987 0.89844 0.93039 0.89838 0.90382 0.90956 0.91064 0.85805 0.76951 0.90841 0.89391 0.90226 0.91889 0.91280 0.76795 0.88740 0.88720 0.91953 0.86118 0.88894 0.88376 0.89017 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 8.34 36.00 0.30 -0.96 16 2 C -0.03 -0.32 6.11 -101.17 -0.62 -0.94 16 3 C -0.13 -0.84 9.98 36.01 0.36 -0.48 16 4 C -0.24 -2.45 9.63 -37.81 -0.36 -2.81 16 5 C 0.54 7.14 7.72 -12.66 -0.10 7.04 16 6 O -0.54 -8.90 13.10 5.26 0.07 -8.83 16 7 N -0.72 -7.96 5.12 -61.49 -0.32 -8.27 16 8 C 0.11 1.41 4.43 -4.04 -0.02 1.40 16 9 C 0.20 2.02 0.54 -131.81 -0.07 1.95 16 10 C -0.16 -1.05 7.04 37.16 0.26 -0.79 16 11 N -0.73 -8.17 4.71 -47.60 -0.22 -8.40 16 12 C 0.54 8.88 7.26 -10.99 -0.08 8.80 16 13 O -0.51 -10.22 12.69 5.56 0.07 -10.15 16 14 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 15 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 16 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 17 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 20 Si 0.86 21.96 27.74 -169.99 -4.72 17.24 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 24 C -0.15 -1.69 4.06 -90.62 -0.37 -2.06 16 25 C -0.18 -1.61 9.61 -26.73 -0.26 -1.86 16 26 C -0.17 -1.70 9.80 -26.73 -0.26 -1.96 16 27 H 0.08 1.07 7.48 -51.93 -0.39 0.68 16 28 H 0.05 0.43 7.96 -51.93 -0.41 0.02 16 29 H 0.08 1.00 6.95 -51.93 -0.36 0.63 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 33 H 0.12 0.98 8.05 -52.49 -0.42 0.56 16 34 H 0.40 3.32 7.14 -40.82 -0.29 3.03 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.47 6.63 -51.93 -0.34 1.12 16 37 H 0.08 0.49 6.85 -51.93 -0.36 0.14 16 38 H 0.06 0.34 6.86 -51.93 -0.36 -0.02 16 39 H 0.07 0.41 7.02 -51.93 -0.36 0.05 16 40 H 0.40 3.30 8.48 -40.82 -0.35 2.95 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.12 1.75 7.20 -51.93 -0.37 1.37 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 0.69 5.87 -51.93 -0.30 0.38 16 47 H 0.09 0.86 7.44 -51.93 -0.39 0.47 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -35.37 398.29 -8.77 -44.14 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.66 Total: 6.37 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.78 Total: -6.76 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.24 Total: -42.52 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.14 Total: -18.98 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.24 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.37 -8.77 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746257642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.404 kcal (2) G-P(sol) polarization free energy of solvation -35.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds