Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50700 * 120.00447 * 2 1 4 4 C 1.32994 * 119.99535 * 179.97438 * 2 1 3 5 5 C 1.47109 * 119.99842 * 174.42059 * 4 2 1 6 6 O 1.21609 * 119.99675 * 4.86522 * 5 4 2 7 7 N 1.34776 * 119.99810 * 184.85853 * 5 4 2 8 8 C 1.46500 * 119.99602 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.02004 * 326.39506 * 8 7 5 10 10 C 1.54269 * 110.03116 * 87.83487 * 8 7 5 11 11 C 1.54894 * 104.19530 * 95.67434 * 10 8 7 12 12 C 1.54889 * 102.74934 * 37.93963 * 11 10 8 13 13 C 1.53877 * 110.03037 * 204.99864 * 8 7 5 14 14 H 1.08994 * 110.03240 * 0.02562 * 13 8 7 15 15 C 1.52997 * 110.02983 * 121.43574 * 13 8 7 16 16 N 1.46499 * 109.47127 * 185.00054 * 15 13 8 17 17 C 1.34780 * 120.00219 * 179.97438 * 16 15 13 18 18 O 1.21275 * 119.99677 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00015 * 179.97438 * 17 16 15 20 20 S 1.81004 * 109.46964 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99869 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00008 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99999 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00328 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99986 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47247 * 89.99852 * 25 23 21 27 27 H 1.48498 * 109.47062 * 210.00187 * 25 23 21 28 28 H 1.48500 * 109.47044 * 329.99761 * 25 23 21 29 29 H 1.08996 * 109.47450 * 240.00568 * 1 2 3 30 30 H 1.09005 * 109.46606 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47122 * 119.99770 * 1 2 3 32 32 H 1.09000 * 109.46662 * 244.59568 * 3 2 1 33 33 H 1.08999 * 109.46999 * 4.58867 * 3 2 1 34 34 H 1.08992 * 109.47406 * 124.59301 * 3 2 1 35 35 H 1.08002 * 120.00238 * 354.15071 * 4 2 1 36 36 H 0.96999 * 120.00095 * 0.02562 * 7 5 4 37 37 H 1.09001 * 110.48770 * 214.34946 * 10 8 7 38 38 H 1.08998 * 110.48637 * 336.99511 * 10 8 7 39 39 H 1.09000 * 110.75490 * 279.62481 * 11 10 8 40 40 H 1.09000 * 110.75244 * 156.25882 * 11 10 8 41 41 H 1.08996 * 110.48383 * 203.37518 * 12 11 10 42 42 H 1.09003 * 110.59721 * 80.79312 * 12 11 10 43 43 H 1.09004 * 109.47196 * 304.99576 * 15 13 8 44 44 H 1.09003 * 109.47640 * 64.99949 * 15 13 8 45 45 H 0.97002 * 120.00197 * 359.97438 * 16 15 13 46 46 H 1.08999 * 109.47239 * 300.00192 * 19 17 16 47 47 H 1.08995 * 109.46827 * 60.00381 * 19 17 16 48 48 H 0.96996 * 120.00234 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1718 -1.1518 0.0005 5 6 3.6377 -1.1550 -0.1234 6 8 4.2489 -0.1037 -0.1371 7 7 4.3031 -2.3229 -0.2214 8 6 5.7630 -2.3260 -0.3442 9 1 6.0918 -1.4540 -0.9095 10 6 6.4110 -2.3244 1.0558 11 6 6.7024 -3.8187 1.3411 12 6 7.1461 -4.3510 -0.0441 13 6 6.2303 -3.6146 -1.0435 14 1 5.3710 -4.2373 -1.2919 15 6 7.0113 -3.2683 -2.3128 16 7 7.3471 -4.5003 -3.0309 17 6 8.0384 -4.4397 -4.1863 18 8 8.3829 -3.3654 -4.6312 19 6 8.3844 -5.7071 -4.9246 20 16 9.3081 -5.2975 -6.4263 21 6 9.5730 -6.9148 -7.0733 22 1 9.1946 -7.7769 -6.5440 23 6 10.2679 -7.0810 -8.2632 24 7 10.4654 -8.2892 -8.7469 25 14 10.9230 -5.5901 -9.1784 26 1 12.2976 -5.2845 -8.7070 27 1 10.9515 -5.8767 -10.6352 28 1 10.0405 -4.4239 -8.9206 29 1 -0.3634 -0.5137 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 2.8240 1.3991 -0.9283 33 1 1.5552 2.1319 0.0822 34 1 2.9475 1.3280 0.8459 35 1 1.6360 -2.0846 0.0963 36 1 3.8155 -3.1613 -0.2107 37 1 7.3374 -1.7501 1.0467 38 1 5.7192 -1.9226 1.7960 39 1 5.8017 -4.3299 1.6810 40 1 7.5056 -3.9232 2.0705 41 1 6.9907 -5.4281 -0.1065 42 1 8.1914 -4.1058 -0.2323 43 1 6.4012 -2.6300 -2.9520 44 1 7.9278 -2.7432 -2.0437 45 1 7.0719 -5.3596 -2.6748 46 1 8.9950 -6.3449 -4.2855 47 1 7.4681 -6.2327 -5.1933 48 1 10.9514 -8.4054 -9.5783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746938565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = -80.613784 kcal Electronic energy + Delta-G solvation = -26381.018928 eV Core-core repulsion = 22561.480770 eV Total energy + Delta-G solvation = -3819.538158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56751 -39.42278 -38.38794 -35.80798 -34.63432 -33.72405 -32.44042 -30.80085 -29.24538 -28.72162 -28.15261 -27.36120 -25.63400 -24.45256 -22.06812 -20.82768 -20.78215 -20.12261 -18.89368 -17.88001 -17.26500 -16.89160 -16.36185 -15.85659 -15.56578 -15.35896 -14.98050 -14.94130 -14.79157 -14.63343 -14.15918 -13.91637 -13.85102 -13.77203 -13.24662 -12.94859 -12.80937 -12.76615 -12.72575 -12.21150 -12.07278 -12.01382 -11.93824 -11.78715 -11.42336 -11.26487 -11.22372 -11.16182 -11.00596 -10.99020 -10.60396 -9.88257 -9.85104 -9.64052 -9.52783 -9.18436 -9.02194 -8.96193 -8.49866 -6.91837 -6.29090 -4.00793 1.00699 2.73163 2.90752 2.98199 3.00672 3.31315 3.34779 3.51138 3.64753 4.13824 4.17631 4.33142 4.33532 4.40343 4.43019 4.74370 4.78212 4.85704 5.00216 5.01740 5.03800 5.05106 5.07322 5.10057 5.21555 5.27981 5.29386 5.31689 5.40536 5.51706 5.53153 5.61208 5.65232 5.68440 5.73699 5.76817 5.80861 5.86873 5.98570 6.00746 6.08947 6.14257 6.28892 6.51233 7.23783 7.60080 7.93924 7.99065 8.41138 8.49345 9.17198 10.80075 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.001886 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.418138 B =14844.885617 C =15699.350009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.029 4.029 3 C -0.118 4.118 4 C -0.242 4.242 5 C 0.545 3.455 6 O -0.540 6.540 7 N -0.721 5.721 8 C 0.148 3.852 9 H 0.096 0.904 10 C -0.132 4.132 11 C -0.124 4.124 12 C -0.122 4.122 13 C -0.109 4.109 14 H 0.086 0.914 15 C 0.130 3.870 16 N -0.736 5.736 17 C 0.530 3.470 18 O -0.519 6.519 19 C -0.124 4.124 20 S -0.142 6.142 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.399 0.601 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.399 0.601 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 11.392 24.722 33.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.031 4.031 3 C -0.174 4.174 4 C -0.263 4.263 5 C 0.335 3.665 6 O -0.419 6.419 7 N -0.372 5.372 8 C 0.043 3.957 9 H 0.114 0.886 10 C -0.170 4.170 11 C -0.161 4.161 12 C -0.159 4.159 13 C -0.129 4.129 14 H 0.104 0.896 15 C 0.006 3.994 16 N -0.390 5.390 17 C 0.315 3.685 18 O -0.393 6.393 19 C -0.274 4.274 20 S 0.084 5.916 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.233 0.767 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.233 0.767 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.920 13.833 23.807 32.852 hybrid contribution -0.451 -1.936 0.131 1.993 sum -18.371 11.896 23.938 32.435 Atomic orbital electron populations 1.21050 0.91085 1.03491 1.02926 1.22617 0.95959 0.95548 0.88928 1.21099 0.99269 0.92642 1.04430 1.22309 0.93174 0.98998 1.11827 1.18567 0.88069 0.83559 0.76264 1.90793 1.70109 1.30949 1.50055 1.46025 1.07274 1.08633 1.75314 1.21506 0.79472 0.98401 0.96321 0.88593 1.22767 1.01056 0.96911 0.96288 1.22508 1.01130 0.95477 0.97024 1.22500 0.99793 0.99814 0.93843 1.22299 0.99039 0.96496 0.95050 0.89597 1.21362 0.99339 0.87274 0.91457 1.45931 1.59020 1.09426 1.24635 1.20283 0.76967 0.91073 0.80135 1.90708 1.51843 1.30477 1.66288 1.23275 1.04712 0.97834 1.01624 1.84813 1.71056 1.14097 1.21596 1.22317 1.42205 0.90774 1.11615 0.89398 1.24712 0.94397 0.96170 0.96030 1.69935 1.39801 1.21053 1.20904 0.86735 0.81304 0.84175 0.79643 1.19197 1.19943 1.15919 0.90593 0.91096 0.90420 0.89834 0.92881 0.89838 0.85761 0.76672 0.90544 0.91202 0.91564 0.91256 0.91052 0.90578 0.91526 0.91168 0.76742 0.88509 0.88513 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.54 10.07 36.00 0.36 -0.18 16 2 C -0.03 -0.20 6.11 -101.17 -0.62 -0.82 16 3 C -0.12 -0.95 8.34 36.01 0.30 -0.65 16 4 C -0.24 -1.73 9.67 -37.80 -0.37 -2.09 16 5 C 0.55 5.14 7.73 -12.66 -0.10 5.04 16 6 O -0.54 -6.84 12.76 5.27 0.07 -6.78 16 7 N -0.72 -5.24 5.03 -53.90 -0.27 -5.51 16 8 C 0.15 1.20 2.90 -66.81 -0.19 1.00 16 9 H 0.10 1.01 7.09 -51.93 -0.37 0.64 16 10 C -0.13 -0.98 6.54 -25.07 -0.16 -1.14 16 11 C -0.12 -0.75 6.91 -24.74 -0.17 -0.92 16 12 C -0.12 -0.80 6.08 -25.07 -0.15 -0.95 16 13 C -0.11 -0.79 2.73 -89.50 -0.24 -1.04 16 14 H 0.09 0.53 7.62 -51.93 -0.40 0.13 16 15 C 0.13 1.41 4.73 -4.04 -0.02 1.39 16 16 N -0.74 -8.93 5.40 -60.29 -0.33 -9.25 16 17 C 0.53 9.32 7.85 -10.98 -0.09 9.23 16 18 O -0.52 -11.30 15.86 5.56 0.09 -11.21 16 19 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 20 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 21 C -0.52 -15.03 10.04 30.94 0.31 -14.71 16 22 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 23 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 24 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 25 Si 0.86 21.88 27.74 -169.99 -4.72 17.16 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.25 7.70 -51.93 -0.40 -0.15 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.81 7.32 -51.93 -0.38 0.43 16 33 H 0.05 0.32 7.71 -51.93 -0.40 -0.08 16 34 H 0.08 0.78 7.14 -51.93 -0.37 0.41 16 35 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.40 1.91 8.30 -40.82 -0.34 1.57 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.58 7.76 -51.93 -0.40 0.18 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.83 8.00 -51.93 -0.42 0.42 16 45 H 0.40 3.64 8.36 -40.82 -0.34 3.30 16 46 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 47 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -35.76 404.31 -9.33 -45.09 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.04 Total: 1.07 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.01 Total: -5.27 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.18 Total: -40.54 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.16 Total: -17.99 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.76 -9.33 -45.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746938565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.523 kcal (2) G-P(sol) polarization free energy of solvation -35.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds