Wall clock time and date at job start Sat Apr 11 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50703 * 119.99797 * 2 1 4 4 C 1.32996 * 119.99587 * 179.97438 * 2 1 3 5 5 C 1.47097 * 120.00071 * 5.63426 * 4 2 1 6 6 O 1.21611 * 120.00431 * 354.75135 * 5 4 2 7 7 N 1.34774 * 119.99825 * 174.74889 * 5 4 2 8 8 C 1.46499 * 120.00325 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.43279 * 34.29528 * 8 7 5 10 10 C 1.54275 * 110.48536 * 271.75783 * 8 7 5 11 11 C 1.53872 * 106.59875 * 217.57435 * 10 8 7 12 12 C 1.54270 * 106.59777 * 0.02562 * 11 10 8 13 13 C 1.54883 * 104.19673 * 23.60698 * 12 11 10 14 14 H 1.08992 * 110.75812 * 80.37859 * 13 12 11 15 15 C 1.53006 * 110.75516 * 203.74463 * 13 12 11 16 16 N 1.46498 * 109.47385 * 288.32900 * 15 13 12 17 17 C 1.34772 * 120.00365 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99671 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00104 * 179.97438 * 17 16 15 20 20 S 1.81005 * 109.47078 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99814 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00437 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99965 * 180.02562 * 21 20 19 24 24 N 1.31636 * 119.99815 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00450 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46866 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47152 * 119.99453 * 25 23 21 28 28 H 1.48494 * 109.47263 * 240.00249 * 25 23 21 29 29 H 1.09007 * 109.47461 * 238.26987 * 1 2 3 30 30 H 1.09002 * 109.47127 * 358.25988 * 1 2 3 31 31 H 1.08997 * 109.47519 * 118.26213 * 1 2 3 32 32 H 1.09006 * 109.46392 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47035 * 299.99922 * 3 2 1 34 34 H 1.09000 * 109.47129 * 60.00165 * 3 2 1 35 35 H 1.07999 * 119.99202 * 185.63108 * 4 2 1 36 36 H 0.97006 * 120.00366 * 359.97438 * 7 5 4 37 37 H 1.09000 * 110.02726 * 336.86086 * 10 8 7 38 38 H 1.09002 * 110.03019 * 98.24346 * 10 8 7 39 39 H 1.09002 * 110.03115 * 119.27837 * 11 10 8 40 40 H 1.08992 * 110.03358 * 240.71188 * 11 10 8 41 41 H 1.09004 * 110.48889 * 142.28775 * 12 11 10 42 42 H 1.09002 * 110.48313 * 264.79415 * 12 11 10 43 43 H 1.08998 * 109.46691 * 48.33054 * 15 13 12 44 44 H 1.09001 * 109.46928 * 168.32615 * 15 13 12 45 45 H 0.97006 * 119.99732 * 0.02562 * 16 15 13 46 46 H 1.08998 * 109.47518 * 299.99835 * 19 17 16 47 47 H 1.09001 * 109.47395 * 60.00189 * 19 17 16 48 48 H 0.97003 * 119.99729 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4417 -2.4227 -0.1240 6 8 0.2256 -2.4271 -0.1313 7 7 2.1204 -3.5822 -0.2300 8 6 1.3932 -4.8479 -0.3546 9 1 0.4753 -4.7048 -0.9246 10 6 1.0781 -5.4290 1.0394 11 6 1.2383 -6.9551 0.9259 12 6 1.6458 -7.2482 -0.5329 13 6 2.2847 -5.9247 -1.0220 14 1 3.3150 -5.8422 -0.6762 15 6 2.2127 -5.8189 -2.5467 16 7 3.1537 -6.7678 -3.1470 17 6 3.2629 -6.8517 -4.4877 18 8 2.5824 -6.1414 -5.1971 19 6 4.2312 -7.8274 -5.1052 20 16 4.1460 -7.7023 -6.9089 21 6 5.3426 -8.9158 -7.3565 22 1 5.8657 -9.4671 -6.5893 23 6 5.6129 -9.1630 -8.6953 24 7 4.9749 -8.4913 -9.6305 25 14 6.8809 -10.4499 -9.1701 26 1 7.4514 -11.0594 -7.9419 27 1 6.2330 -11.5039 -9.9912 28 1 7.9670 -9.8091 -9.9543 29 1 -0.3634 -0.5405 0.8741 30 1 -0.3633 1.0272 0.0312 31 1 -0.3634 -0.4866 -0.9051 32 1 3.3322 1.1059 0.0005 33 1 1.9971 1.8767 -0.8899 34 1 1.9972 1.8767 0.8900 35 1 3.2480 -1.1540 0.0923 36 1 3.0904 -3.5787 -0.2246 37 1 1.7781 -5.0337 1.7755 38 1 0.0560 -5.1803 1.3252 39 1 2.0161 -7.3005 1.6070 40 1 0.2938 -7.4478 1.1563 41 1 2.3729 -8.0594 -0.5703 42 1 0.7690 -7.4950 -1.1316 43 1 1.2010 -6.0506 -2.8795 44 1 2.4730 -4.8058 -2.8532 45 1 3.6976 -7.3362 -2.5795 46 1 5.2429 -7.5950 -4.7727 47 1 3.9716 -8.8406 -4.7982 48 1 5.1641 -8.6639 -10.5661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746938566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:57 Heat of formation + Delta-G solvation = -82.965319 kcal Electronic energy + Delta-G solvation = -26400.018146 eV Core-core repulsion = 22580.378018 eV Total energy + Delta-G solvation = -3819.640128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44597 -39.30084 -38.29663 -35.74647 -34.50288 -33.87011 -32.43068 -30.72370 -29.16745 -28.62673 -28.10872 -27.16593 -25.52208 -24.38077 -21.89598 -20.97786 -20.60876 -20.03069 -18.89657 -17.85896 -17.26246 -16.82250 -16.32536 -15.88004 -15.30311 -15.22956 -14.91138 -14.80825 -14.67137 -14.51493 -14.07558 -13.94994 -13.84607 -13.64965 -13.17698 -12.88574 -12.82002 -12.61329 -12.57277 -12.38929 -12.07386 -11.95763 -11.89547 -11.66095 -11.53139 -11.12909 -11.07465 -11.06229 -11.02085 -10.77091 -10.75014 -9.83712 -9.80767 -9.58492 -9.40502 -9.12806 -9.08141 -8.87685 -8.22915 -6.50074 -6.22041 -3.92487 1.08039 2.92418 3.03874 3.07620 3.11174 3.21123 3.27792 3.32277 3.68634 4.17494 4.19960 4.23093 4.40528 4.46215 4.49233 4.86621 4.90682 5.00023 5.04152 5.06709 5.10081 5.10755 5.13129 5.17847 5.23546 5.27016 5.34759 5.45074 5.57039 5.59132 5.60560 5.67288 5.71249 5.78797 5.82200 5.83022 5.89666 5.90499 6.03666 6.13444 6.16880 6.20030 6.32023 6.61388 7.29350 7.59500 7.71016 8.04199 8.35082 8.62529 9.23333 10.85413 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.001952 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.477634 B =14340.016711 C =15678.003250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.030 4.030 3 C -0.128 4.128 4 C -0.240 4.240 5 C 0.547 3.453 6 O -0.541 6.541 7 N -0.722 5.722 8 C 0.150 3.850 9 H 0.098 0.902 10 C -0.133 4.133 11 C -0.122 4.122 12 C -0.118 4.118 13 C -0.110 4.110 14 H 0.088 0.912 15 C 0.130 3.870 16 N -0.738 5.738 17 C 0.530 3.470 18 O -0.517 6.517 19 C -0.153 4.153 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.400 0.600 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.397 0.603 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 11.953 26.898 29.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.032 4.032 3 C -0.184 4.184 4 C -0.261 4.261 5 C 0.337 3.663 6 O -0.420 6.420 7 N -0.373 5.373 8 C 0.045 3.955 9 H 0.116 0.884 10 C -0.172 4.172 11 C -0.160 4.160 12 C -0.156 4.156 13 C -0.130 4.130 14 H 0.107 0.893 15 C 0.006 3.994 16 N -0.392 5.392 17 C 0.316 3.684 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.235 0.765 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.231 0.769 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.696 13.171 25.504 29.475 hybrid contribution 2.526 -1.971 0.800 3.303 sum -4.170 11.200 26.304 28.892 Atomic orbital electron populations 1.21034 0.90768 1.01150 1.04443 1.22606 0.96973 0.94533 0.89118 1.21037 0.99901 0.94483 1.03013 1.22382 1.00105 0.91983 1.11581 1.18569 0.87401 0.84207 0.76128 1.90781 1.13698 1.87328 1.50206 1.45925 1.10118 1.05998 1.75241 1.21769 0.95787 0.81863 0.96079 0.88355 1.22523 1.02427 0.95347 0.96881 1.22092 1.01706 0.95429 0.96808 1.22403 1.01042 0.96246 0.95949 1.22633 1.00156 0.95602 0.94563 0.89344 1.21253 0.94044 0.93642 0.90482 1.45975 1.43891 1.42467 1.06909 1.20310 0.83130 0.83475 0.81436 1.90712 1.44389 1.43173 1.60831 1.23526 1.00397 1.00413 1.06029 1.85425 1.54552 1.52787 0.90673 1.22908 1.25990 1.24590 0.94818 0.90882 1.25004 0.96633 0.96660 0.95372 1.70034 1.40136 1.39561 1.00527 0.86111 0.80350 0.80443 0.78549 1.19630 1.20562 1.20578 0.90033 0.92935 0.89690 0.91344 0.90247 0.90611 0.85717 0.76531 0.91431 0.91149 0.91638 0.91474 0.90881 0.90689 0.91374 0.91591 0.76921 0.89285 0.89248 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 8.34 36.01 0.30 -0.71 16 2 C -0.03 -0.24 6.11 -101.16 -0.62 -0.85 16 3 C -0.13 -0.65 10.04 36.01 0.36 -0.29 16 4 C -0.24 -1.93 9.63 -37.81 -0.36 -2.29 16 5 C 0.55 5.57 7.73 -12.67 -0.10 5.47 16 6 O -0.54 -7.12 12.78 5.27 0.07 -7.06 16 7 N -0.72 -5.83 5.10 -53.37 -0.27 -6.10 16 8 C 0.15 1.27 2.63 -66.26 -0.17 1.10 16 9 H 0.10 1.06 7.52 -51.93 -0.39 0.67 16 10 C -0.13 -1.00 6.54 -25.61 -0.17 -1.16 16 11 C -0.12 -0.79 6.80 -25.61 -0.17 -0.96 16 12 C -0.12 -0.85 6.20 -25.07 -0.16 -1.00 16 13 C -0.11 -0.85 2.51 -88.62 -0.22 -1.07 16 14 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 15 C 0.13 1.48 5.11 -4.04 -0.02 1.46 16 16 N -0.74 -9.44 5.48 -60.29 -0.33 -9.77 16 17 C 0.53 9.84 7.85 -10.99 -0.09 9.75 16 18 O -0.52 -11.88 15.86 5.56 0.09 -11.80 16 19 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 25 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.08 0.79 7.32 -51.92 -0.38 0.41 16 30 H 0.05 0.35 8.00 -51.93 -0.42 -0.07 16 31 H 0.08 0.89 7.14 -51.93 -0.37 0.52 16 32 H 0.07 0.29 7.82 -51.93 -0.41 -0.11 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.12 0.72 7.88 -52.49 -0.41 0.30 16 36 H 0.40 2.33 8.54 -40.82 -0.35 1.98 16 37 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.61 7.94 -51.93 -0.41 0.19 16 43 H 0.07 0.88 7.99 -51.93 -0.41 0.46 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 46 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 47 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 408.60 15.07 6.16 6.16 Total: -1.00 -36.10 408.60 -9.87 -45.98 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.08 Total: 1.93 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.00 Total: -6.35 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.13 Total: -41.34 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.16 Total: -18.85 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.10 -9.87 -45.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746938566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.990 kcal (2) G-P(sol) polarization free energy of solvation -36.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds