Wall clock time and date at job start Sat Apr 11 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50703 * 119.99797 * 2 1 4 4 C 1.32996 * 119.99587 * 179.97438 * 2 1 3 5 5 C 1.47097 * 120.00071 * 5.63426 * 4 2 1 6 6 O 1.21611 * 120.00431 * 354.75135 * 5 4 2 7 7 N 1.34774 * 119.99825 * 174.74889 * 5 4 2 8 8 C 1.46499 * 120.00325 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.43279 * 34.29528 * 8 7 5 10 10 C 1.54275 * 110.48536 * 271.75783 * 8 7 5 11 11 C 1.53872 * 106.59875 * 217.57435 * 10 8 7 12 12 C 1.54270 * 106.59777 * 0.02562 * 11 10 8 13 13 C 1.54883 * 104.19673 * 23.60698 * 12 11 10 14 14 H 1.08992 * 110.75812 * 80.37859 * 13 12 11 15 15 C 1.53006 * 110.75516 * 203.74463 * 13 12 11 16 16 N 1.46498 * 109.47385 * 288.32900 * 15 13 12 17 17 C 1.34772 * 120.00365 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99671 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00104 * 179.97438 * 17 16 15 20 20 S 1.81005 * 109.47078 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99814 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00437 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99965 * 180.02562 * 21 20 19 24 24 N 1.31636 * 119.99815 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00450 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46866 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47152 * 119.99453 * 25 23 21 28 28 H 1.48494 * 109.47263 * 240.00249 * 25 23 21 29 29 H 1.09007 * 109.47461 * 238.26987 * 1 2 3 30 30 H 1.09002 * 109.47127 * 358.25988 * 1 2 3 31 31 H 1.08997 * 109.47519 * 118.26213 * 1 2 3 32 32 H 1.09006 * 109.46392 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47035 * 299.99922 * 3 2 1 34 34 H 1.09000 * 109.47129 * 60.00165 * 3 2 1 35 35 H 1.07999 * 119.99202 * 185.63108 * 4 2 1 36 36 H 0.97006 * 120.00366 * 359.97438 * 7 5 4 37 37 H 1.09000 * 110.02726 * 336.86086 * 10 8 7 38 38 H 1.09002 * 110.03019 * 98.24346 * 10 8 7 39 39 H 1.09002 * 110.03115 * 119.27837 * 11 10 8 40 40 H 1.08992 * 110.03358 * 240.71188 * 11 10 8 41 41 H 1.09004 * 110.48889 * 142.28775 * 12 11 10 42 42 H 1.09002 * 110.48313 * 264.79415 * 12 11 10 43 43 H 1.08998 * 109.46691 * 48.33054 * 15 13 12 44 44 H 1.09001 * 109.46928 * 168.32615 * 15 13 12 45 45 H 0.97006 * 119.99732 * 0.02562 * 16 15 13 46 46 H 1.08998 * 109.47518 * 299.99835 * 19 17 16 47 47 H 1.09001 * 109.47395 * 60.00189 * 19 17 16 48 48 H 0.97003 * 119.99729 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4417 -2.4227 -0.1240 6 8 0.2256 -2.4271 -0.1313 7 7 2.1204 -3.5822 -0.2300 8 6 1.3932 -4.8479 -0.3546 9 1 0.4753 -4.7048 -0.9246 10 6 1.0781 -5.4290 1.0394 11 6 1.2383 -6.9551 0.9259 12 6 1.6458 -7.2482 -0.5329 13 6 2.2847 -5.9247 -1.0220 14 1 3.3150 -5.8422 -0.6762 15 6 2.2127 -5.8189 -2.5467 16 7 3.1537 -6.7678 -3.1470 17 6 3.2629 -6.8517 -4.4877 18 8 2.5824 -6.1414 -5.1971 19 6 4.2312 -7.8274 -5.1052 20 16 4.1460 -7.7023 -6.9089 21 6 5.3426 -8.9158 -7.3565 22 1 5.8657 -9.4671 -6.5893 23 6 5.6129 -9.1630 -8.6953 24 7 4.9749 -8.4913 -9.6305 25 14 6.8809 -10.4499 -9.1701 26 1 7.4514 -11.0594 -7.9419 27 1 6.2330 -11.5039 -9.9912 28 1 7.9670 -9.8091 -9.9543 29 1 -0.3634 -0.5405 0.8741 30 1 -0.3633 1.0272 0.0312 31 1 -0.3634 -0.4866 -0.9051 32 1 3.3322 1.1059 0.0005 33 1 1.9971 1.8767 -0.8899 34 1 1.9972 1.8767 0.8900 35 1 3.2480 -1.1540 0.0923 36 1 3.0904 -3.5787 -0.2246 37 1 1.7781 -5.0337 1.7755 38 1 0.0560 -5.1803 1.3252 39 1 2.0161 -7.3005 1.6070 40 1 0.2938 -7.4478 1.1563 41 1 2.3729 -8.0594 -0.5703 42 1 0.7690 -7.4950 -1.1316 43 1 1.2010 -6.0506 -2.8795 44 1 2.4730 -4.8058 -2.8532 45 1 3.6976 -7.3362 -2.5795 46 1 5.2429 -7.5950 -4.7727 47 1 3.9716 -8.8406 -4.7982 48 1 5.1641 -8.6639 -10.5661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746938566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:56 Heat of formation + Delta-G solvation = -108.015146 kcal Electronic energy + Delta-G solvation = -26401.104388 eV Core-core repulsion = 22580.378018 eV Total energy + Delta-G solvation = -3820.726370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24725 -40.56683 -39.19352 -36.38922 -35.67838 -34.65562 -34.57752 -31.94214 -29.95436 -29.70069 -28.65835 -27.82365 -27.65594 -25.34489 -22.58212 -21.98369 -21.56750 -20.86361 -19.92046 -19.47856 -18.07141 -17.80973 -17.52456 -17.03093 -16.87663 -16.60954 -16.09908 -15.81556 -15.59921 -15.41623 -15.17694 -14.93767 -14.64166 -14.57872 -14.43671 -14.28445 -13.75309 -13.44664 -13.35076 -13.22290 -13.15482 -13.01622 -12.90857 -12.71288 -12.66160 -12.50832 -12.40506 -12.11685 -11.89060 -11.76120 -11.69609 -11.33008 -11.15627 -10.97342 -10.62340 -10.27817 -10.25816 -10.13264 -9.79731 -8.66586 -8.34399 -6.12535 0.42796 1.27562 1.41992 1.47888 1.58738 1.61745 2.20392 2.27058 2.30620 2.36881 2.99877 3.31327 3.47284 3.51391 3.76592 3.84339 3.93324 4.00770 4.23723 4.26624 4.29371 4.32914 4.42352 4.49389 4.51917 4.52240 4.57234 4.64155 4.67754 4.74602 4.79376 4.85468 4.91177 5.03881 5.06425 5.13440 5.17427 5.22501 5.24362 5.38743 5.42744 5.47043 5.54503 5.59141 5.65865 6.20570 6.51711 6.63587 7.07010 7.25778 7.32263 8.75059 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.001952 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.477634 B =14340.016711 C =15678.003250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.034 4.034 3 C -0.125 4.125 4 C -0.248 4.248 5 C 0.536 3.464 6 O -0.581 6.581 7 N -0.712 5.712 8 C 0.149 3.851 9 H 0.068 0.932 10 C -0.127 4.127 11 C -0.115 4.115 12 C -0.118 4.118 13 C -0.093 4.093 14 H 0.117 0.883 15 C 0.132 3.868 16 N -0.706 5.706 17 C 0.532 3.468 18 O -0.570 6.570 19 C -0.128 4.128 20 S -0.157 6.157 21 C -0.543 4.543 22 H 0.085 0.915 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.274 1.274 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.414 0.586 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.418 0.582 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 10.965 29.415 31.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.036 4.036 3 C -0.181 4.181 4 C -0.269 4.269 5 C 0.327 3.673 6 O -0.463 6.463 7 N -0.363 5.363 8 C 0.044 3.956 9 H 0.086 0.914 10 C -0.166 4.166 11 C -0.153 4.153 12 C -0.156 4.156 13 C -0.112 4.112 14 H 0.135 0.865 15 C 0.008 3.992 16 N -0.361 5.361 17 C 0.318 3.682 18 O -0.448 6.448 19 C -0.279 4.279 20 S 0.070 5.930 21 C -0.691 4.691 22 H 0.103 0.897 23 C -0.194 4.194 24 N -0.549 5.549 25 Si 0.822 3.178 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.170 0.830 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.256 0.744 46 H 0.131 0.869 47 H 0.130 0.870 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.999 12.159 28.093 30.872 hybrid contribution 1.606 -1.602 0.126 2.272 sum -2.393 10.557 28.219 30.224 Atomic orbital electron populations 1.20946 0.91999 1.01710 1.02509 1.22883 0.96456 0.95928 0.88304 1.21078 1.00201 0.92962 1.03831 1.22565 1.01324 0.90909 1.12094 1.19076 0.87163 0.85426 0.75636 1.90768 1.15474 1.87937 1.52161 1.45853 1.10785 1.05389 1.74276 1.21692 0.94985 0.82350 0.96616 0.91403 1.22451 1.01718 0.96338 0.96047 1.22056 1.02434 0.94244 0.96575 1.22424 1.00943 0.96106 0.96143 1.22534 1.01601 0.95784 0.91310 0.86527 1.21297 0.92551 0.92355 0.92969 1.45650 1.43337 1.42049 1.05042 1.20123 0.82429 0.82738 0.82958 1.90705 1.46423 1.45213 1.62479 1.23362 1.02271 1.02178 1.00077 1.85649 1.55407 1.53683 0.98235 1.23239 1.25864 1.24488 0.95539 0.89728 1.26162 0.98916 0.99023 0.95273 1.70202 1.42099 1.41571 1.01016 0.84884 0.77140 0.77133 0.78654 1.17848 1.20045 1.19985 0.91571 0.91005 0.92225 0.90118 0.89741 0.89276 0.82983 0.74902 0.90493 0.92760 0.89800 0.91412 0.89098 0.92079 0.93200 0.92985 0.74420 0.86939 0.87041 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.34 71.24 0.59 -1.47 16 2 C -0.03 -0.50 6.11 -17.61 -0.11 -0.61 16 3 C -0.12 -1.01 10.04 71.24 0.72 -0.29 16 4 C -0.25 -3.78 9.63 23.43 0.23 -3.55 16 5 C 0.54 11.05 7.73 86.57 0.67 11.72 16 6 O -0.58 -16.33 12.78 -4.07 -0.05 -16.39 16 7 N -0.71 -10.93 5.10 -441.01 -2.25 -13.18 16 8 C 0.15 2.46 2.63 46.08 0.12 2.58 16 9 H 0.07 1.56 7.52 -2.39 -0.02 1.55 16 10 C -0.13 -1.75 6.54 31.32 0.20 -1.55 16 11 C -0.12 -1.21 6.80 31.32 0.21 -0.99 16 12 C -0.12 -1.40 6.20 31.67 0.20 -1.20 16 13 C -0.09 -1.24 2.51 -9.50 -0.02 -1.26 16 14 H 0.12 0.99 8.03 -2.39 -0.02 0.97 16 15 C 0.13 2.92 5.11 86.38 0.44 3.36 16 16 N -0.71 -16.64 5.48 -463.06 -2.54 -19.18 16 17 C 0.53 19.34 7.85 87.66 0.69 20.03 16 18 O -0.57 -26.87 15.86 -3.03 -0.05 -26.92 16 19 C -0.13 -4.93 6.16 71.23 0.44 -4.49 16 20 S -0.16 -8.71 20.57 -56.49 -1.16 -9.87 16 21 C -0.54 -30.83 9.50 67.95 0.65 -30.19 16 22 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.61 5.49 84.86 0.47 1.08 16 24 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 25 Si 1.00 43.36 29.55 68.60 2.03 45.38 16 26 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 H 0.07 1.37 7.32 -2.38 -0.02 1.35 16 30 H 0.07 0.94 8.00 -2.39 -0.02 0.92 16 31 H 0.06 1.37 7.14 -2.39 -0.02 1.35 16 32 H 0.08 0.48 7.82 -2.38 -0.02 0.46 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.15 1.38 7.88 -2.91 -0.02 1.36 16 36 H 0.41 3.95 8.54 -92.70 -0.79 3.16 16 37 H 0.08 0.94 8.04 -2.39 -0.02 0.92 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.06 0.92 7.94 -2.39 -0.02 0.90 16 43 H 0.05 1.32 7.99 -2.39 -0.02 1.30 16 44 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.42 6.50 8.47 -92.70 -0.79 5.71 16 46 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 47 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 48 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -83.22 408.60 1.14 -82.09 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.61 Total: 20.80 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 5.49 Total: -6.83 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -4.50 Total: -88.26 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.10 Total: -43.30 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -83.22 1.14 -82.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746938566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.930 kcal (2) G-P(sol) polarization free energy of solvation -83.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds