Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50692 * 120.00049 * 2 1 4 4 C 1.32993 * 119.99687 * 180.02562 * 2 1 3 5 5 C 1.47103 * 120.00449 * 352.83068 * 4 2 1 6 6 O 1.21617 * 119.99608 * 354.01224 * 5 4 2 7 7 N 1.34768 * 120.00506 * 174.00923 * 5 4 2 8 8 C 1.46502 * 120.00535 * 180.02562 * 7 5 4 9 9 H 1.09004 * 110.01213 * 326.39359 * 8 7 5 10 10 C 1.54267 * 110.07245 * 87.80770 * 8 7 5 11 11 C 1.54888 * 104.19369 * 142.91755 * 10 8 7 12 12 C 1.54889 * 102.75160 * 322.06112 * 11 10 8 13 13 C 1.53878 * 110.03429 * 205.00212 * 8 7 5 14 14 H 1.08995 * 110.02667 * 121.33290 * 13 8 7 15 15 C 1.52997 * 110.03155 * 359.95019 * 13 8 7 16 16 N 1.46501 * 109.46642 * 174.99927 * 15 13 8 17 17 C 1.34778 * 119.99750 * 179.97438 * 16 15 13 18 18 O 1.21285 * 119.99991 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00344 * 180.02562 * 17 16 15 20 20 S 1.81003 * 109.47597 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00099 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00291 * 0.02562 * 21 20 19 23 23 C 1.38796 * 119.99788 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00325 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99815 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47143 * 60.00260 * 25 23 21 27 27 H 1.48497 * 109.46903 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47149 * 300.00185 * 25 23 21 29 29 H 1.09001 * 109.46744 * 264.39014 * 1 2 3 30 30 H 1.08994 * 109.47137 * 24.38765 * 1 2 3 31 31 H 1.09003 * 109.47380 * 144.39197 * 1 2 3 32 32 H 1.09007 * 109.46994 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47167 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47435 * 60.00229 * 3 2 1 35 35 H 1.08006 * 120.00153 * 172.83672 * 4 2 1 36 36 H 0.97008 * 119.99957 * 0.02562 * 7 5 4 37 37 H 1.08997 * 110.48687 * 261.60240 * 10 8 7 38 38 H 1.09002 * 110.48605 * 24.24611 * 10 8 7 39 39 H 1.09010 * 110.75272 * 80.37500 * 11 10 8 40 40 H 1.09004 * 110.75688 * 203.74107 * 11 10 8 41 41 H 1.09004 * 110.48504 * 279.26078 * 12 11 10 42 42 H 1.09003 * 110.48739 * 156.61825 * 12 11 10 43 43 H 1.09000 * 109.47268 * 295.00069 * 15 13 8 44 44 H 1.08999 * 109.46987 * 54.99939 * 15 13 8 45 45 H 0.96992 * 120.00522 * 0.02562 * 16 15 13 46 46 H 1.09000 * 109.46956 * 300.00175 * 19 17 16 47 47 H 1.08999 * 109.47274 * 60.00030 * 19 17 16 48 48 H 0.97000 * 120.00214 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4451 -2.4208 0.1579 6 8 0.2529 -2.4128 0.3980 7 7 2.1002 -3.5924 0.0369 8 6 1.3762 -4.8562 0.1941 9 1 0.5813 -4.7416 0.9312 10 6 0.7822 -5.2980 -1.1593 11 6 0.9334 -6.8395 -1.1554 12 6 2.3066 -7.0465 -0.4695 13 6 2.3455 -5.9680 0.6327 14 1 2.0214 -6.3923 1.5829 15 6 3.7621 -5.4057 0.7661 16 7 4.6507 -6.4420 1.2977 17 6 5.9556 -6.1719 1.5000 18 8 6.3940 -5.0709 1.2423 19 6 6.8699 -7.2380 2.0463 20 16 8.5458 -6.5728 2.2042 21 6 9.3775 -7.9877 2.8454 22 1 8.8309 -8.9029 3.0186 23 6 10.7352 -7.9263 3.1267 24 7 11.4015 -6.8110 2.9151 25 14 11.6171 -9.4265 3.8058 26 1 11.5014 -10.5482 2.8396 27 1 13.0505 -9.1032 4.0202 28 1 11.0004 -9.8206 5.0979 29 1 -0.3633 -0.1005 1.0228 30 1 -0.3633 0.9359 -0.4243 31 1 -0.3634 -0.8355 -0.5983 32 1 3.3322 1.1058 -0.0005 33 1 1.9971 1.8766 -0.8900 34 1 1.9973 1.8766 0.8900 35 1 3.2457 -1.1555 -0.1172 36 1 3.0512 -3.5988 -0.1543 37 1 -0.2692 -5.0179 -1.2241 38 1 1.3457 -4.8616 -1.9839 39 1 0.1371 -7.3043 -0.5738 40 1 0.9474 -7.2289 -2.1734 41 1 3.1164 -6.8925 -1.1828 42 1 2.3677 -8.0426 -0.0309 43 1 4.1202 -5.0871 -0.2129 44 1 3.7520 -4.5526 1.4445 45 1 4.3002 -7.3226 1.5035 46 1 6.5121 -7.5567 3.0253 47 1 6.8796 -8.0910 1.3677 48 1 12.3503 -6.7680 3.1122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746938567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = -72.291649 kcal Electronic energy + Delta-G solvation = -26718.693931 eV Core-core repulsion = 22899.516648 eV Total energy + Delta-G solvation = -3819.177283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62235 -39.32360 -38.33323 -35.65514 -34.40929 -33.92649 -32.44592 -30.71939 -29.12399 -28.63348 -28.04816 -27.06192 -25.54347 -24.61445 -22.05578 -21.06938 -20.46566 -19.81373 -18.88774 -17.84387 -17.43485 -16.55341 -16.09063 -15.82181 -15.67969 -15.20504 -15.13814 -14.81861 -14.70713 -14.40508 -14.12727 -13.97625 -13.87044 -13.65089 -13.15362 -12.84715 -12.76304 -12.60973 -12.58039 -12.27036 -11.91257 -11.87078 -11.83039 -11.72752 -11.38656 -11.15999 -11.06417 -11.05354 -11.01463 -10.96901 -10.77760 -9.84431 -9.76274 -9.49951 -9.44634 -9.12442 -9.07757 -8.91997 -8.26451 -6.52067 -6.23220 -3.94030 1.13864 2.92274 3.05304 3.07800 3.10472 3.22259 3.26406 3.29792 3.66093 4.18312 4.19125 4.22599 4.39470 4.51502 4.58025 4.89401 4.95293 5.04617 5.05179 5.08863 5.11460 5.11936 5.17950 5.18783 5.21905 5.30947 5.40047 5.46671 5.55562 5.55947 5.59294 5.62989 5.66774 5.77142 5.82297 5.84363 5.86049 5.90725 6.01248 6.11424 6.24343 6.27453 6.34341 6.55934 7.33200 7.57594 7.65510 8.07958 8.33330 8.56342 9.22009 10.84128 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.002127 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.242824 B =13161.530785 C =14895.508657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.032 4.032 3 C -0.129 4.129 4 C -0.238 4.238 5 C 0.547 3.453 6 O -0.544 6.544 7 N -0.726 5.726 8 C 0.151 3.849 9 H 0.095 0.905 10 C -0.133 4.133 11 C -0.123 4.123 12 C -0.121 4.121 13 C -0.113 4.113 14 H 0.090 0.910 15 C 0.124 3.876 16 N -0.736 5.736 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.405 0.595 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.061 6.568 -8.257 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.185 4.185 4 C -0.259 4.259 5 C 0.338 3.662 6 O -0.424 6.424 7 N -0.380 5.380 8 C 0.046 3.954 9 H 0.113 0.887 10 C -0.172 4.172 11 C -0.161 4.161 12 C -0.159 4.159 13 C -0.132 4.132 14 H 0.108 0.892 15 C -0.001 4.001 16 N -0.391 5.391 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.146 0.854 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.232 0.768 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.972 8.519 -8.504 26.825 hybrid contribution 0.523 -2.714 0.775 2.871 sum -23.449 5.805 -7.729 25.363 Atomic orbital electron populations 1.21128 0.90967 1.02321 1.03594 1.22565 0.96818 0.94545 0.89428 1.21032 1.00161 0.94434 1.02883 1.22449 1.00490 0.91928 1.11014 1.18593 0.86872 0.84353 0.76387 1.90739 1.15108 1.87728 1.48842 1.46303 1.13322 1.05357 1.73019 1.21552 0.94024 0.82026 0.97810 0.88730 1.22795 1.01511 0.95781 0.97127 1.22461 0.97186 0.95524 1.00941 1.22489 0.97974 0.98250 0.97179 1.22306 0.94373 0.96052 1.00459 0.89168 1.21338 0.87903 0.91542 0.99300 1.45969 1.08966 1.15716 1.68458 1.20322 0.81607 0.89190 0.77097 1.90697 1.75067 1.23801 1.49671 1.23529 1.02925 1.00552 1.03424 1.85383 0.94253 1.19042 1.84650 1.22823 0.96632 0.98918 1.50077 0.90975 1.24992 0.96402 0.96995 0.95190 1.70002 1.09251 1.25704 1.45330 0.86224 0.78295 0.81618 0.79367 1.19933 1.20807 1.19936 0.90375 0.92779 0.89296 0.91134 0.90702 0.90332 0.85427 0.75674 0.91021 0.91050 0.91191 0.91165 0.90797 0.90998 0.91582 0.91177 0.76763 0.89233 0.89217 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 8.48 36.01 0.31 -0.79 16 2 C -0.03 -0.27 6.11 -101.17 -0.62 -0.89 16 3 C -0.13 -0.80 10.10 36.00 0.36 -0.44 16 4 C -0.24 -2.26 9.62 -37.81 -0.36 -2.63 16 5 C 0.55 6.04 7.61 -12.67 -0.10 5.94 16 6 O -0.54 -7.23 12.93 5.26 0.07 -7.16 16 7 N -0.73 -6.81 4.39 -53.90 -0.24 -7.05 16 8 C 0.15 1.30 3.22 -66.81 -0.22 1.09 16 9 H 0.09 0.93 7.56 -51.93 -0.39 0.54 16 10 C -0.13 -1.04 6.53 -25.07 -0.16 -1.20 16 11 C -0.12 -0.80 6.91 -24.74 -0.17 -0.97 16 12 C -0.12 -0.84 6.08 -25.07 -0.15 -1.00 16 13 C -0.11 -0.88 2.96 -89.50 -0.27 -1.14 16 14 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 15 C 0.12 1.30 3.60 -4.04 -0.01 1.29 16 16 N -0.74 -9.08 5.40 -60.30 -0.33 -9.40 16 17 C 0.53 9.49 7.85 -10.99 -0.09 9.41 16 18 O -0.52 -11.27 15.86 5.55 0.09 -11.19 16 19 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 22 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 25 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 30 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.09 0.94 6.14 -51.93 -0.32 0.62 16 32 H 0.07 0.43 7.82 -51.92 -0.41 0.02 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.13 1.05 7.88 -52.48 -0.41 0.64 16 36 H 0.41 3.56 5.88 -40.82 -0.24 3.32 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 39 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.58 7.76 -51.93 -0.40 0.18 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.72 7.11 -51.93 -0.37 0.35 16 44 H 0.07 0.83 7.42 -51.93 -0.39 0.44 16 45 H 0.40 3.81 8.36 -40.82 -0.34 3.47 16 46 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 47 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -34.87 402.97 -9.77 -44.64 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.87 Total: 3.92 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.06 Total: -6.98 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.17 Total: -41.70 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.16 Total: -18.35 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.87 -9.77 -44.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746938567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.657 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds