Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.52999 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.56443 * 29.30959 * 4 3 2 6 6 C 1.53073 * 117.49324 * 243.59702 * 4 3 2 7 7 C 1.53003 * 59.98748 * 252.51593 * 6 4 3 8 8 H 1.08994 * 117.49880 * 107.49887 * 7 6 4 9 9 C 1.50698 * 117.49714 * 252.50195 * 7 6 4 10 10 O 1.21274 * 120.00205 * 68.74610 * 9 7 6 11 11 N 1.34780 * 119.99817 * 248.74619 * 9 7 6 12 12 C 1.46503 * 119.99735 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46769 * 184.98057 * 12 11 9 14 14 H 1.09007 * 112.73444 * 314.84457 * 13 12 11 15 15 C 1.53609 * 113.56315 * 85.59556 * 13 12 11 16 16 C 1.53497 * 83.30494 * 140.82328 * 15 13 12 17 17 N 1.47069 * 88.05088 * 333.98149 * 16 15 13 18 18 C 1.34772 * 136.05816 * 207.12547 * 17 16 15 19 19 O 1.21277 * 119.99963 * 175.01790 * 18 17 16 20 20 C 1.50700 * 119.99875 * 355.01197 * 18 17 16 21 21 S 1.81000 * 109.47010 * 179.97438 * 20 18 17 22 22 C 1.76197 * 100.00068 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99755 * 0.02562 * 22 21 20 24 24 C 1.38794 * 119.99999 * 179.97438 * 22 21 20 25 25 N 1.31629 * 120.00300 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99959 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47246 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47198 * 120.00134 * 26 24 22 29 29 H 1.48504 * 109.47512 * 240.00300 * 26 24 22 30 30 H 1.09005 * 109.47186 * 59.99804 * 1 2 3 31 31 H 1.08998 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47305 * 300.00770 * 1 2 3 33 33 H 1.08998 * 109.47107 * 240.00028 * 2 1 3 34 34 H 1.08995 * 109.47016 * 119.99448 * 2 1 3 35 35 H 1.09000 * 109.47837 * 59.99776 * 3 2 1 36 36 H 1.09005 * 109.47292 * 299.99579 * 3 2 1 37 37 H 1.08996 * 117.51514 * 145.03578 * 6 4 3 38 38 H 1.09007 * 117.51351 * 359.97438 * 6 4 3 39 39 H 0.96997 * 119.99708 * 359.97438 * 11 9 7 40 40 H 1.08990 * 109.47603 * 64.97871 * 12 11 9 41 41 H 1.08992 * 109.46856 * 304.97328 * 12 11 9 42 42 H 1.09011 * 114.20254 * 27.25752 * 15 13 12 43 43 H 1.09002 * 114.24368 * 254.40098 * 15 13 12 44 44 H 1.08999 * 113.46813 * 219.17015 * 16 15 13 45 45 H 1.09000 * 113.46137 * 88.79276 * 16 15 13 46 46 H 1.08994 * 109.47511 * 300.00457 * 20 18 17 47 47 H 1.08999 * 109.46704 * 60.00612 * 20 18 17 48 48 H 0.97001 * 120.00019 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5851 -0.4803 6 6 4.2761 2.0465 1.2171 7 6 4.2765 2.7946 -0.1176 8 1 3.6512 3.6839 -0.1963 9 6 5.5696 2.8386 -0.8902 10 8 6.0115 1.8265 -1.3912 11 7 6.2350 4.0030 -1.0243 12 6 7.4919 4.0460 -1.7758 13 6 8.1006 5.4459 -1.6719 14 1 7.3664 6.2369 -1.8252 15 6 8.9635 5.6487 -0.4174 16 6 9.8620 6.4354 -1.3817 17 7 9.3204 5.6152 -2.4758 18 6 9.7523 5.2006 -3.6832 19 8 9.0790 4.4325 -4.3371 20 6 11.0717 5.6915 -4.2209 21 16 11.3692 4.9603 -5.8497 22 6 12.9304 5.6835 -6.2293 23 1 13.3991 6.3562 -5.5263 24 6 13.5583 5.3878 -7.4313 25 7 12.9873 4.5676 -8.2879 26 14 15.2138 6.1540 -7.8334 27 1 15.6378 7.0324 -6.7137 28 1 16.2215 5.0809 -8.0289 29 1 15.0985 6.9574 -9.0771 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.6767 1.9565 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 5.2112 1.5864 1.5364 38 1 3.6506 2.4441 2.0164 39 1 5.8814 4.8126 -0.6239 40 1 7.2978 3.8109 -2.8223 41 1 8.1875 3.3158 -1.3624 42 1 9.4143 4.7339 -0.0323 43 1 8.4944 6.2586 0.3547 44 1 10.9267 6.2791 -1.2081 45 1 9.5979 7.4901 -1.4581 46 1 11.0468 6.7776 -4.3088 47 1 11.8722 5.4003 -3.5407 48 1 13.4263 4.3607 -9.1277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747732438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = -26.546790 kcal Electronic energy + Delta-G solvation = -25947.859175 eV Core-core repulsion = 22130.665538 eV Total energy + Delta-G solvation = -3817.193637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68445 -39.97958 -37.70793 -37.36974 -34.78782 -34.21570 -32.43441 -30.81891 -29.00826 -28.17827 -27.69094 -25.48706 -24.62423 -22.86484 -22.29677 -22.09656 -20.96257 -20.40366 -18.91013 -17.80358 -17.51432 -16.71265 -16.39432 -15.71650 -15.50003 -15.41952 -15.24344 -14.81045 -14.77683 -14.40249 -14.12970 -13.90804 -13.72004 -13.56099 -13.14970 -12.92783 -12.68557 -12.61150 -12.51795 -12.42451 -12.10919 -11.93476 -11.69020 -11.66945 -11.43188 -11.20349 -11.07353 -11.03621 -10.86427 -10.76297 -10.60100 -10.37076 -9.98215 -9.81895 -9.45649 -9.13514 -9.07883 -8.68091 -8.23782 -6.50937 -6.21961 -3.92926 2.31892 2.50916 2.96358 3.09143 3.21373 3.25772 3.30816 3.48680 3.56617 4.04910 4.19524 4.20717 4.37872 4.43584 4.54895 4.64345 4.69777 4.76458 4.77664 4.84847 4.88273 4.92813 5.13076 5.13377 5.14525 5.29960 5.32134 5.33561 5.41782 5.44163 5.47418 5.51194 5.57858 5.65329 5.68627 5.80222 5.83609 5.84316 5.88487 5.94998 6.02303 6.06713 6.12622 6.28642 7.28788 7.59376 7.80208 8.07411 8.34968 8.50814 9.23246 10.85538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020991 B = 0.001716 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.570060 B =16317.486615 C =17392.902702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.118 4.118 5 H 0.119 0.881 6 C -0.149 4.149 7 C -0.190 4.190 8 H 0.123 0.877 9 C 0.540 3.460 10 O -0.533 6.533 11 N -0.723 5.723 12 C 0.112 3.888 13 C 0.124 3.876 14 H 0.095 0.905 15 C -0.151 4.151 16 C 0.101 3.899 17 N -0.647 5.647 18 C 0.561 3.439 19 O -0.508 6.508 20 C -0.144 4.144 21 S -0.059 6.059 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.399 0.601 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.237 1.351 24.758 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.127 4.127 4 C -0.136 4.136 5 H 0.137 0.863 6 C -0.186 4.186 7 C -0.212 4.212 8 H 0.141 0.859 9 C 0.326 3.674 10 O -0.410 6.410 11 N -0.375 5.375 12 C -0.012 4.012 13 C 0.019 3.981 14 H 0.112 0.888 15 C -0.189 4.189 16 C -0.022 4.022 17 N -0.387 5.387 18 C 0.351 3.649 19 O -0.381 6.381 20 C -0.295 4.295 21 S 0.167 5.833 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.746 3.254 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.233 0.767 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.782 -0.698 22.968 30.983 hybrid contribution 1.778 2.066 0.552 2.781 sum -19.004 1.367 23.520 30.269 Atomic orbital electron populations 1.21782 0.95834 1.01705 1.01747 1.21506 0.95686 0.96427 1.02456 1.21249 0.91803 0.97502 1.02192 1.22490 0.94767 0.95437 1.00925 0.86321 1.23118 1.03171 1.02095 0.90213 1.22291 0.97687 0.99074 1.02111 0.85921 1.19654 0.84666 0.83112 0.79941 1.90747 1.68360 1.33955 1.47894 1.45770 1.24668 1.10984 1.56120 1.21612 0.84893 0.96279 0.98376 1.22778 0.89820 0.96783 0.88715 0.88777 1.23606 0.97864 1.01748 0.95704 1.22885 1.00134 0.95720 0.83486 1.49747 1.18538 1.53223 1.17220 1.20015 0.87406 0.79978 0.77536 1.90729 1.57565 1.33769 1.56042 1.23475 0.95699 1.04561 1.05725 1.85447 1.26365 1.61215 1.10254 1.22894 1.05647 1.32984 1.06824 0.90877 1.24994 0.98439 0.95009 0.95128 1.70029 1.38267 1.32979 1.08938 0.86109 0.82021 0.78912 0.78399 1.19619 1.20539 1.20549 0.92701 0.92700 0.92838 0.91672 0.91802 0.91651 0.91322 0.88271 0.87806 0.76716 0.89451 0.90604 0.88477 0.89219 0.89999 0.89744 0.89284 0.89318 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.75 5.89 -26.73 -0.16 -0.90 16 3 C -0.09 -0.55 5.50 -26.73 -0.15 -0.70 16 4 C -0.12 -0.94 5.25 -90.58 -0.48 -1.41 16 5 H 0.12 1.22 7.60 -51.93 -0.39 0.82 16 6 C -0.15 -0.98 9.88 -26.69 -0.26 -1.24 16 7 C -0.19 -1.50 5.91 -91.77 -0.54 -2.04 16 8 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 9 C 0.54 6.35 7.61 -10.98 -0.08 6.27 16 10 O -0.53 -8.95 16.25 5.56 0.09 -8.86 16 11 N -0.72 -6.96 5.55 -60.30 -0.33 -7.30 16 12 C 0.11 1.43 5.40 -4.04 -0.02 1.41 16 13 C 0.12 1.27 4.08 -72.34 -0.30 0.98 16 14 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 15 C -0.15 -1.08 8.03 -26.16 -0.21 -1.29 16 16 C 0.10 0.91 8.41 -8.51 -0.07 0.84 16 17 N -0.65 -9.07 3.57 -177.25 -0.63 -9.70 16 18 C 0.56 10.98 8.02 -10.99 -0.09 10.89 16 19 O -0.51 -12.00 15.24 5.56 0.08 -11.92 16 20 C -0.14 -3.01 5.99 36.01 0.22 -2.79 16 21 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 22 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 23 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 24 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 25 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 26 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.46 8.03 -51.93 -0.42 0.05 16 39 H 0.40 2.33 8.48 -40.82 -0.35 1.98 16 40 H 0.09 1.50 7.05 -51.93 -0.37 1.13 16 41 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 42 H 0.10 0.76 7.96 -51.92 -0.41 0.35 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 47 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 415.14 15.07 6.26 6.26 Total: -1.00 -37.86 415.14 -10.83 -48.69 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -8.22 Total: -0.63 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.57 Total: -3.52 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.23 Total: -42.69 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.18 Total: -20.78 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -37.86 -10.83 -48.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747732438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.144 kcal (2) G-P(sol) polarization free energy of solvation -37.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds