Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99618 * 2 1 4 4 C 1.52996 * 109.47438 * 359.97438 * 3 2 1 5 5 C 1.53009 * 109.46953 * 239.99749 * 3 2 1 6 6 C 1.53004 * 109.47407 * 119.99810 * 3 2 1 7 7 C 1.50703 * 109.47335 * 178.03014 * 6 3 2 8 8 O 1.21286 * 119.99669 * 6.21228 * 7 6 3 9 9 N 1.34773 * 119.99924 * 186.20924 * 7 6 3 10 10 C 1.46500 * 119.99756 * 175.37663 * 9 7 6 11 11 C 1.52995 * 115.55340 * 303.33727 * 10 9 7 12 12 N 1.46503 * 109.46605 * 323.75206 * 11 10 9 13 13 C 1.34782 * 119.99791 * 184.76632 * 12 11 10 14 14 O 1.21282 * 119.99755 * 4.99040 * 13 12 11 15 15 C 1.50699 * 119.99896 * 184.99583 * 13 12 11 16 16 S 1.81004 * 109.46867 * 185.09201 * 15 13 12 17 17 C 1.76203 * 99.99955 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99752 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00011 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00039 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47246 * 89.99544 * 21 19 17 23 23 H 1.48503 * 109.47162 * 209.99983 * 21 19 17 24 24 H 1.48506 * 109.46941 * 329.99834 * 21 19 17 25 25 C 1.53003 * 117.49667 * 157.66336 * 10 9 7 26 26 C 1.53003 * 117.49703 * 89.00876 * 10 9 7 27 27 H 1.07995 * 119.99662 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00241 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00241 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47456 * 185.51078 * 4 3 2 31 31 H 1.09002 * 109.46949 * 305.51244 * 4 3 2 32 32 H 1.09000 * 109.47355 * 65.51435 * 4 3 2 33 33 H 1.09000 * 109.46675 * 299.99698 * 5 3 2 34 34 H 1.08997 * 109.46677 * 60.00129 * 5 3 2 35 35 H 1.09004 * 109.46760 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.46977 * 298.03196 * 6 3 2 37 37 H 1.09004 * 109.47068 * 58.02925 * 6 3 2 38 38 H 0.97001 * 119.99775 * 355.37536 * 9 7 6 39 39 H 1.08998 * 109.47400 * 83.75297 * 11 10 9 40 40 H 1.08997 * 109.47336 * 203.75622 * 11 10 9 41 41 H 0.97000 * 120.00580 * 4.76495 * 12 11 10 42 42 H 1.08997 * 109.47140 * 305.09477 * 15 13 12 43 43 H 1.09001 * 109.46971 * 65.09875 * 15 13 12 44 44 H 0.97006 * 119.99918 * 179.97438 * 20 19 17 45 45 H 1.09003 * 117.49648 * 0.02562 * 25 10 9 46 46 H 1.08997 * 117.50119 * 145.02079 * 25 10 9 47 47 H 1.09001 * 117.49718 * 214.98011 * 26 10 9 48 48 H 1.08999 * 117.49837 * 359.96805 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9431 1.3864 1.2493 7 6 3.7328 2.6696 1.2251 8 8 3.5234 3.4943 0.3607 9 7 4.6717 2.9009 2.1639 10 6 5.5090 4.1003 2.0827 11 6 6.2983 4.2673 0.7827 12 7 6.7436 2.9542 0.3098 13 6 7.5419 2.8628 -0.7723 14 8 7.9653 3.8693 -1.3002 15 6 7.9083 1.5101 -1.3263 16 16 9.1006 1.7124 -2.6730 17 6 9.3462 0.0259 -3.1203 18 1 8.8184 -0.7550 -2.5928 19 6 10.2177 -0.2990 -4.1504 20 7 10.8605 0.6527 -4.7936 21 14 10.4775 -2.0870 -4.6251 22 1 9.4940 -2.4697 -5.6699 23 1 11.8543 -2.2641 -5.1526 24 1 10.2907 -2.9485 -3.4300 25 6 6.1630 4.5941 3.3747 26 6 4.9930 5.3694 2.7639 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.6106 3.4090 -0.0993 31 1 0.3797 2.3561 -0.8374 32 1 0.5090 2.4677 0.9344 33 1 3.6515 0.5578 -1.2491 34 1 2.3164 1.3284 -2.1392 35 1 3.4877 2.3305 -1.2495 36 1 2.3136 1.3638 2.1389 37 1 3.6279 0.5385 1.2672 38 1 4.7930 2.2731 2.8934 39 1 5.6617 4.7288 0.0278 40 1 7.1660 4.9017 0.9634 41 1 6.4639 2.1504 0.7753 42 1 8.3510 0.9021 -0.5373 43 1 7.0125 1.0178 -1.7051 44 1 11.4699 0.4256 -5.5133 45 1 5.9706 4.0263 4.2851 46 1 7.1555 5.0382 3.2986 47 1 5.2163 6.3234 2.2861 48 1 4.0304 5.3121 3.2720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747757703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = -29.742928 kcal Electronic energy + Delta-G solvation = -27798.575848 eV Core-core repulsion = 23981.243616 eV Total energy + Delta-G solvation = -3817.332232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.75603 -39.18531 -38.22826 -36.79783 -33.90178 -33.30740 -32.41169 -31.44478 -29.72229 -28.27772 -27.36413 -26.32630 -25.38804 -23.20409 -22.86280 -21.28505 -20.30170 -19.97166 -18.39633 -17.86621 -17.30366 -16.96816 -16.33243 -15.82948 -15.44817 -15.25309 -15.12454 -14.79064 -14.71687 -14.68265 -14.14211 -13.86832 -13.54952 -13.29339 -13.23231 -12.99187 -12.59193 -12.51623 -12.15476 -11.93033 -11.87257 -11.80153 -11.71286 -11.29655 -11.20552 -11.05888 -11.05168 -11.00954 -10.81345 -10.74784 -10.60907 -9.80437 -9.66419 -9.58788 -9.40324 -9.22149 -9.05220 -8.76450 -8.21033 -6.47438 -6.19908 -3.90098 2.03478 2.38940 2.70622 3.05442 3.15795 3.23271 3.27758 3.30989 3.40059 3.76931 4.21977 4.25984 4.37040 4.47227 4.50466 4.63999 4.67722 4.87408 5.03823 5.11746 5.15161 5.16357 5.25839 5.27582 5.29753 5.39764 5.52097 5.54577 5.60163 5.69772 5.70677 5.73390 5.84524 5.87256 5.92033 5.94571 6.02157 6.14776 6.16334 6.33795 6.35994 6.51182 6.58710 6.67962 7.17950 7.60910 7.75918 8.03607 8.36720 8.66761 9.25284 10.87522 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.003154 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.371285 B = 8874.652189 C =11108.351286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C -0.019 4.019 4 C -0.154 4.154 5 C -0.151 4.151 6 C -0.128 4.128 7 C 0.516 3.484 8 O -0.508 6.508 9 N -0.707 5.707 10 C 0.092 3.908 11 C 0.157 3.843 12 N -0.731 5.731 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.151 4.151 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.169 4.169 26 C -0.167 4.167 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.402 0.598 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.394 0.606 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.002 2.026 19.914 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.162 4.162 3 C -0.019 4.019 4 C -0.211 4.211 5 C -0.208 4.208 6 C -0.168 4.168 7 C 0.304 3.696 8 O -0.383 6.383 9 N -0.360 5.360 10 C 0.005 3.995 11 C 0.032 3.968 12 N -0.386 5.386 13 C 0.319 3.681 14 O -0.392 6.392 15 C -0.302 4.302 16 S 0.168 5.832 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.206 4.206 26 C -0.206 4.206 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.237 0.763 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.228 0.772 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.118 0.882 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.262 4.348 18.268 26.194 hybrid contribution -0.557 -3.234 0.952 3.417 sum -18.819 1.114 19.220 26.922 Atomic orbital electron populations 1.24010 0.96179 1.02019 1.01266 1.22969 0.95945 0.97668 0.99621 1.19374 0.94880 0.93286 0.94366 1.22179 0.98536 0.99693 1.00710 1.22056 0.99256 1.03753 0.95743 1.21740 0.99058 0.95715 1.00329 1.20712 0.79410 0.88604 0.80902 1.90632 1.65198 1.46918 1.35517 1.45487 1.36670 1.24418 1.29409 1.20828 0.96897 0.87353 0.94466 1.20936 0.97045 0.86109 0.92730 1.45802 1.52756 1.08559 1.31468 1.20261 0.77276 0.91379 0.79211 1.90701 1.52050 1.37821 1.58604 1.23511 1.05563 0.96317 1.04831 1.85403 1.50435 1.11186 1.36182 1.22864 1.31023 0.92170 1.22283 0.90995 1.24984 0.94844 0.98522 0.95207 1.70021 1.26380 1.32228 1.21642 0.86181 0.77691 0.82925 0.78769 1.20261 1.20755 1.19721 1.23459 0.98731 1.03087 0.95362 1.23364 0.98466 0.95971 1.02756 0.88762 0.87856 0.87399 0.89392 0.92744 0.93505 0.93021 0.92744 0.89593 0.88879 0.88769 0.76322 0.90203 0.90509 0.77225 0.89621 0.89245 0.92198 0.88179 0.87279 0.87697 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 13.71 29.01 0.40 -1.14 16 2 C -0.14 -1.21 8.76 -36.03 -0.32 -1.52 16 3 C -0.02 -0.17 0.74 -155.65 -0.11 -0.29 16 4 C -0.15 -1.48 6.80 37.16 0.25 -1.23 16 5 C -0.15 -1.77 8.13 37.16 0.30 -1.47 16 6 C -0.13 -0.94 4.75 -27.88 -0.13 -1.07 16 7 C 0.52 4.82 6.71 -10.99 -0.07 4.74 16 8 O -0.51 -6.56 10.35 5.55 0.06 -6.51 16 9 N -0.71 -5.13 4.46 -47.61 -0.21 -5.34 16 10 C 0.09 0.81 2.20 -131.82 -0.29 0.52 16 11 C 0.16 1.99 5.12 -4.04 -0.02 1.97 16 12 N -0.73 -10.32 5.29 -60.30 -0.32 -10.64 16 13 C 0.53 10.32 7.84 -10.98 -0.09 10.24 16 14 O -0.52 -12.15 15.86 5.56 0.09 -12.06 16 15 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 16 S -0.06 -1.62 20.58 -107.50 -2.21 -3.83 16 17 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 18 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.17 -1.10 10.10 -26.69 -0.27 -1.37 16 26 C -0.17 -1.26 10.18 -26.69 -0.27 -1.53 16 27 H 0.09 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.10 0.78 5.68 -52.49 -0.30 0.48 16 29 H 0.11 0.84 8.06 -52.49 -0.42 0.41 16 30 H 0.09 1.03 5.61 -51.93 -0.29 0.74 16 31 H 0.05 0.51 7.14 -51.93 -0.37 0.14 16 32 H 0.05 0.39 7.81 -51.93 -0.41 -0.02 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.21 5.57 -51.93 -0.29 0.92 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.40 1.75 8.82 -40.82 -0.36 1.39 16 39 H 0.08 1.21 7.53 -51.93 -0.39 0.82 16 40 H 0.08 1.00 7.88 -51.93 -0.41 0.59 16 41 H 0.39 4.56 7.53 -40.82 -0.31 4.25 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.11 0.72 8.06 -51.93 -0.42 0.30 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 403.97 15.07 6.09 6.09 Total: -1.00 -35.74 403.97 -8.74 -44.48 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.74 Total: 5.05 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -0.20 Total: -8.11 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.20 Total: -41.60 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.15 Total: -18.57 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.74 -8.74 -44.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747757703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.740 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds