Wall clock time and date at job start Sat Apr 11 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 H 1.09008 * 115.55064 * 29.27680 * 3 2 1 5 5 C 1.53000 * 117.49920 * 243.60899 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.47484 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 C 1.50706 * 117.49668 * 252.51929 * 6 5 3 9 9 O 1.21277 * 120.00023 * 68.61167 * 8 6 5 10 10 N 1.34780 * 119.99945 * 248.60941 * 8 6 5 11 11 C 1.47067 * 136.05749 * 359.63255 * 10 8 6 12 12 C 1.53235 * 88.08037 * 207.20150 * 11 10 8 13 13 C 1.53002 * 114.32664 * 220.46690 * 12 11 10 14 14 H 1.09000 * 109.46962 * 33.76240 * 13 12 11 15 15 C 1.53007 * 109.46968 * 153.75723 * 13 12 11 16 16 N 1.46497 * 109.47117 * 273.76207 * 13 12 11 17 17 C 1.34779 * 119.99718 * 155.00115 * 16 13 12 18 18 O 1.21278 * 120.00231 * 359.97438 * 17 16 13 19 19 C 1.50698 * 119.99833 * 180.02562 * 17 16 13 20 20 S 1.81007 * 109.47049 * 179.97438 * 19 17 16 21 21 C 1.76204 * 99.99691 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99528 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00167 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99732 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47144 * 60.00276 * 25 23 21 27 27 H 1.48501 * 109.47314 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47669 * 300.00099 * 25 23 21 29 29 C 1.47063 * 136.05594 * 179.97438 * 10 8 6 30 30 H 1.09003 * 109.47059 * 60.00042 * 1 2 3 31 31 H 1.08999 * 109.47468 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47208 * 300.00339 * 1 2 3 33 33 H 1.08995 * 109.46784 * 239.99741 * 2 1 3 34 34 H 1.08999 * 109.46571 * 120.00049 * 2 1 3 35 35 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 36 36 H 1.09002 * 117.49953 * 144.97630 * 5 3 2 37 37 H 1.08996 * 113.46716 * 321.93229 * 11 10 8 38 38 H 1.08998 * 113.46543 * 92.37838 * 11 10 8 39 39 H 1.09000 * 114.02058 * 87.71649 * 12 11 10 40 40 H 1.09000 * 109.46857 * 60.00453 * 15 13 12 41 41 H 1.08999 * 109.47057 * 179.97438 * 15 13 12 42 42 H 1.08994 * 109.47192 * 300.00379 * 15 13 12 43 43 H 0.97000 * 120.00399 * 334.99622 * 16 13 12 44 44 H 1.09007 * 109.46865 * 299.99402 * 19 17 16 45 45 H 1.08994 * 109.47494 * 59.99439 * 19 17 16 46 46 H 0.97001 * 120.00010 * 179.97438 * 24 23 21 47 47 H 1.09000 * 113.46995 * 267.62435 * 29 10 8 48 48 H 1.09004 * 113.47048 * 38.00518 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8443 1.9074 -1.2157 6 6 3.5507 1.6588 0.1185 7 1 4.1816 0.7733 0.1966 8 6 4.0226 2.8636 0.8911 9 8 3.2150 3.6180 1.3907 10 7 5.3420 3.1027 1.0269 11 6 6.5866 2.4495 0.5943 12 6 7.2762 3.0718 1.8130 13 6 8.6856 3.6000 1.5383 14 1 8.7363 3.9878 0.5209 15 6 9.0123 4.7202 2.5279 16 7 9.6540 2.5120 1.6950 17 6 10.8354 2.5630 1.0482 18 8 11.0965 3.5094 0.3362 19 6 11.8314 1.4436 1.2090 20 16 13.3059 1.8015 0.2221 21 6 14.2720 0.3738 0.5867 22 1 13.8847 -0.3854 1.2501 23 6 15.5304 0.2244 0.0205 24 7 16.0023 1.1494 -0.7884 25 14 16.5544 -1.2895 0.4064 26 1 15.8205 -2.5065 -0.0242 27 1 17.8487 -1.2094 -0.3172 28 1 16.8085 -1.3559 1.8680 29 6 6.1708 4.1284 1.6779 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 3.0104 1.1855 -2.0153 36 1 2.7211 2.9424 -1.5348 37 1 6.5413 1.3611 0.6318 38 1 6.9653 2.8237 -0.3568 39 1 7.2090 2.4674 2.7176 40 1 8.9616 4.3324 3.5453 41 1 10.0166 5.0962 2.3325 42 1 8.2918 5.5297 2.4113 43 1 9.4451 1.7549 2.2643 44 1 12.1097 1.3529 2.2590 45 1 11.3854 0.5088 0.8694 46 1 16.8819 1.0451 -1.1838 47 1 6.4377 4.9540 1.0181 48 1 5.7720 4.4658 2.6347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756131553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:26 Heat of formation + Delta-G solvation = -25.203748 kcal Electronic energy + Delta-G solvation = -26154.025539 eV Core-core repulsion = 22336.890140 eV Total energy + Delta-G solvation = -3817.135399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07569 -39.60036 -38.75537 -37.06361 -35.08245 -32.51937 -32.45369 -31.66515 -29.50288 -28.47688 -26.63824 -25.50742 -24.87914 -24.19311 -23.16576 -20.97901 -20.68645 -20.32977 -19.20938 -17.91548 -17.55222 -16.82157 -16.43374 -16.35583 -15.43158 -15.08411 -15.01222 -14.94685 -14.82627 -14.27893 -14.16298 -13.94720 -13.61842 -13.22976 -13.09402 -12.97939 -12.93767 -12.74018 -12.57406 -12.53493 -12.45863 -12.00209 -11.79059 -11.73395 -11.46866 -11.12213 -11.07278 -11.06120 -10.97743 -10.78324 -10.71191 -10.47768 -10.09647 -9.84832 -9.44509 -9.10436 -9.08423 -8.96249 -8.27172 -6.52885 -6.24068 -3.94913 2.14266 2.36631 2.95874 3.03961 3.21437 3.25132 3.27833 3.39726 3.58682 3.88689 3.97594 4.18163 4.30097 4.33610 4.38481 4.57314 4.65647 4.75088 4.80059 4.89754 4.94971 5.02882 5.06381 5.11096 5.13147 5.15853 5.23401 5.25216 5.27587 5.32127 5.40732 5.50154 5.54640 5.58064 5.64027 5.65219 5.70948 5.72915 5.85036 5.94771 5.94960 6.10296 6.14895 6.58595 7.33592 7.56703 7.64936 7.81733 8.32394 8.56223 9.21233 10.83236 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.001814 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.448264 B =15429.769412 C =16692.141173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.187 4.187 7 H 0.123 0.877 8 C 0.573 3.427 9 O -0.542 6.542 10 N -0.645 5.645 11 C 0.106 3.894 12 C -0.132 4.132 13 C 0.157 3.843 14 H 0.093 0.907 15 C -0.165 4.165 16 N -0.734 5.734 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C 0.116 3.884 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.090 0.910 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.989 -0.417 4.205 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.184 4.184 6 C -0.208 4.208 7 H 0.140 0.860 8 C 0.364 3.636 9 O -0.419 6.419 10 N -0.380 5.380 11 C -0.017 4.017 12 C -0.152 4.152 13 C 0.051 3.949 14 H 0.111 0.889 15 C -0.223 4.223 16 N -0.389 5.389 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.007 4.007 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.108 0.892 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -27.078 1.598 3.124 27.304 hybrid contribution 0.485 -2.465 1.351 2.853 sum -26.593 -0.868 4.475 26.981 Atomic orbital electron populations 1.21741 0.95062 1.01750 1.02166 1.21162 0.96377 0.93466 1.02283 1.22522 0.91134 0.98881 1.01021 0.86431 1.23125 1.01704 1.03272 0.90324 1.22218 0.97678 0.98657 1.02229 0.85951 1.19213 0.79526 0.85551 0.79323 1.90703 1.52533 1.49503 1.49188 1.49486 1.03761 1.29384 1.55402 1.23108 0.80879 0.99468 0.98236 1.23239 0.93569 0.98748 0.99635 1.20748 0.85238 0.87767 1.01099 0.88899 1.22185 1.03011 0.97958 0.99153 1.46064 1.17428 1.24256 1.51129 1.20303 0.81487 0.87542 0.78649 1.90705 1.76420 1.34380 1.37507 1.23539 1.01457 0.99335 1.06149 1.85397 1.08017 1.30703 1.59195 1.22827 1.04194 1.07323 1.34179 0.90983 1.24984 0.96758 0.97257 0.94523 1.70003 1.18304 1.33171 1.28774 0.86233 0.78945 0.81757 0.78615 1.19943 1.20804 1.19947 1.22952 0.86818 0.92402 0.98570 0.92484 0.92514 0.92493 0.91519 0.91363 0.87583 0.88295 0.90033 0.88963 0.87147 0.92346 0.91318 0.91765 0.76822 0.89240 0.89244 0.92111 0.89190 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.87 37.16 0.37 -0.43 16 2 C -0.10 -0.56 6.22 -26.73 -0.17 -0.72 16 3 C -0.12 -0.89 5.25 -90.59 -0.48 -1.36 16 4 H 0.12 1.08 7.60 -51.92 -0.39 0.68 16 5 C -0.15 -1.03 9.88 -26.73 -0.26 -1.29 16 6 C -0.19 -1.53 5.74 -91.73 -0.53 -2.05 16 7 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 8 C 0.57 6.34 7.86 -10.98 -0.09 6.25 16 9 O -0.54 -7.95 17.03 5.56 0.09 -7.86 16 10 N -0.65 -5.92 3.69 -185.38 -0.68 -6.60 16 11 C 0.11 0.76 7.98 -8.64 -0.07 0.69 16 12 C -0.13 -0.91 3.64 -90.23 -0.33 -1.24 16 13 C 0.16 1.48 2.47 -67.93 -0.17 1.31 16 14 H 0.09 1.04 7.34 -51.93 -0.38 0.66 16 15 C -0.16 -1.53 9.29 37.16 0.35 -1.19 16 16 N -0.73 -8.20 5.08 -53.80 -0.27 -8.48 16 17 C 0.53 9.01 7.81 -10.99 -0.09 8.92 16 18 O -0.52 -10.82 15.52 5.56 0.09 -10.74 16 19 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 20 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 21 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 22 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 25 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C 0.12 0.91 7.27 -8.50 -0.06 0.84 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.11 0.57 8.03 -51.93 -0.42 0.15 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.68 7.94 -51.93 -0.41 0.27 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.48 7.48 -51.93 -0.39 0.10 16 43 H 0.40 3.32 8.60 -40.82 -0.35 2.97 16 44 H 0.09 1.57 8.14 -51.91 -0.42 1.14 16 45 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 415.36 15.07 6.26 6.26 Total: -1.00 -35.74 415.36 -10.33 -46.08 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.21 Total: -0.26 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.10 Total: -5.62 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.22 Total: -40.07 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.18 Total: -18.59 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.74 -10.33 -46.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756131553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.872 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds