Wall clock time and date at job start Sat Apr 11 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 H 1.09008 * 115.55064 * 29.27680 * 3 2 1 5 5 C 1.53000 * 117.49920 * 243.60899 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.47484 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 C 1.50706 * 117.49668 * 252.51929 * 6 5 3 9 9 O 1.21277 * 120.00023 * 68.61167 * 8 6 5 10 10 N 1.34780 * 119.99945 * 248.60941 * 8 6 5 11 11 C 1.47067 * 136.05749 * 359.63255 * 10 8 6 12 12 C 1.53235 * 88.08037 * 207.20150 * 11 10 8 13 13 C 1.53002 * 114.32664 * 220.46690 * 12 11 10 14 14 H 1.09000 * 109.46962 * 33.76240 * 13 12 11 15 15 C 1.53007 * 109.46968 * 153.75723 * 13 12 11 16 16 N 1.46497 * 109.47117 * 273.76207 * 13 12 11 17 17 C 1.34779 * 119.99718 * 155.00115 * 16 13 12 18 18 O 1.21278 * 120.00231 * 359.97438 * 17 16 13 19 19 C 1.50698 * 119.99833 * 180.02562 * 17 16 13 20 20 S 1.81007 * 109.47049 * 179.97438 * 19 17 16 21 21 C 1.76204 * 99.99691 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99528 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00167 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99732 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47144 * 60.00276 * 25 23 21 27 27 H 1.48501 * 109.47314 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47669 * 300.00099 * 25 23 21 29 29 C 1.47063 * 136.05594 * 179.97438 * 10 8 6 30 30 H 1.09003 * 109.47059 * 60.00042 * 1 2 3 31 31 H 1.08999 * 109.47468 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47208 * 300.00339 * 1 2 3 33 33 H 1.08995 * 109.46784 * 239.99741 * 2 1 3 34 34 H 1.08999 * 109.46571 * 120.00049 * 2 1 3 35 35 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 36 36 H 1.09002 * 117.49953 * 144.97630 * 5 3 2 37 37 H 1.08996 * 113.46716 * 321.93229 * 11 10 8 38 38 H 1.08998 * 113.46543 * 92.37838 * 11 10 8 39 39 H 1.09000 * 114.02058 * 87.71649 * 12 11 10 40 40 H 1.09000 * 109.46857 * 60.00453 * 15 13 12 41 41 H 1.08999 * 109.47057 * 179.97438 * 15 13 12 42 42 H 1.08994 * 109.47192 * 300.00379 * 15 13 12 43 43 H 0.97000 * 120.00399 * 334.99622 * 16 13 12 44 44 H 1.09007 * 109.46865 * 299.99402 * 19 17 16 45 45 H 1.08994 * 109.47494 * 59.99439 * 19 17 16 46 46 H 0.97001 * 120.00010 * 179.97438 * 24 23 21 47 47 H 1.09000 * 113.46995 * 267.62435 * 29 10 8 48 48 H 1.09004 * 113.47048 * 38.00518 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8443 1.9074 -1.2157 6 6 3.5507 1.6588 0.1185 7 1 4.1816 0.7733 0.1966 8 6 4.0226 2.8636 0.8911 9 8 3.2150 3.6180 1.3907 10 7 5.3420 3.1027 1.0269 11 6 6.5866 2.4495 0.5943 12 6 7.2762 3.0718 1.8130 13 6 8.6856 3.6000 1.5383 14 1 8.7363 3.9878 0.5209 15 6 9.0123 4.7202 2.5279 16 7 9.6540 2.5120 1.6950 17 6 10.8354 2.5630 1.0482 18 8 11.0965 3.5094 0.3362 19 6 11.8314 1.4436 1.2090 20 16 13.3059 1.8015 0.2221 21 6 14.2720 0.3738 0.5867 22 1 13.8847 -0.3854 1.2501 23 6 15.5304 0.2244 0.0205 24 7 16.0023 1.1494 -0.7884 25 14 16.5544 -1.2895 0.4064 26 1 15.8205 -2.5065 -0.0242 27 1 17.8487 -1.2094 -0.3172 28 1 16.8085 -1.3559 1.8680 29 6 6.1708 4.1284 1.6779 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 3.0104 1.1855 -2.0153 36 1 2.7211 2.9424 -1.5348 37 1 6.5413 1.3611 0.6318 38 1 6.9653 2.8237 -0.3568 39 1 7.2090 2.4674 2.7176 40 1 8.9616 4.3324 3.5453 41 1 10.0166 5.0962 2.3325 42 1 8.2918 5.5297 2.4113 43 1 9.4451 1.7549 2.2643 44 1 12.1097 1.3529 2.2590 45 1 11.3854 0.5088 0.8694 46 1 16.8819 1.0451 -1.1838 47 1 6.4377 4.9540 1.0181 48 1 5.7720 4.4658 2.6347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756131553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:25 Heat of formation + Delta-G solvation = -48.636628 kcal Electronic energy + Delta-G solvation = -26155.041665 eV Core-core repulsion = 22336.890140 eV Total energy + Delta-G solvation = -3818.151525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82249 -40.64498 -39.68478 -37.79881 -36.14971 -34.55624 -33.06853 -32.69910 -30.52014 -29.56700 -27.64541 -27.26924 -25.55209 -24.71947 -23.93311 -21.66273 -21.59488 -21.26767 -19.94299 -19.74690 -18.29756 -17.79128 -17.71362 -17.14854 -16.85188 -16.35341 -16.31490 -15.96061 -15.54339 -15.49357 -14.98790 -14.89527 -14.59839 -14.52272 -14.23990 -13.96215 -13.61112 -13.57862 -13.42159 -13.19601 -13.15209 -13.10932 -13.01881 -12.84746 -12.72748 -12.56298 -12.22293 -11.96083 -11.88703 -11.73996 -11.61924 -11.29673 -11.10465 -11.09445 -10.89809 -10.79245 -10.23118 -10.06228 -9.82898 -8.62460 -8.31979 -6.09200 1.29993 1.36286 1.45357 1.49425 1.58555 1.67668 1.71221 2.27361 2.32843 2.79355 3.02215 3.16070 3.33927 3.37798 3.70237 3.71817 3.78653 3.95076 4.03637 4.09589 4.14846 4.24628 4.32691 4.37620 4.44401 4.45380 4.48040 4.51963 4.57215 4.57969 4.64701 4.72696 4.73740 4.80734 4.90694 4.96917 5.02893 5.13592 5.17840 5.19296 5.27660 5.34955 5.44438 5.47014 5.58035 6.22182 6.58727 6.61025 7.01910 7.09625 7.33742 8.76718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.001814 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.448264 B =15429.769412 C =16692.141173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.120 4.120 4 H 0.094 0.906 5 C -0.139 4.139 6 C -0.191 4.191 7 H 0.143 0.857 8 C 0.564 3.436 9 O -0.589 6.589 10 N -0.647 5.647 11 C 0.106 3.894 12 C -0.111 4.111 13 C 0.160 3.840 14 H 0.076 0.924 15 C -0.162 4.162 16 N -0.706 5.706 17 C 0.538 3.462 18 O -0.564 6.564 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.996 3.004 26 H -0.261 1.261 27 H -0.281 1.281 28 H -0.263 1.263 29 C 0.108 3.892 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.082 0.918 43 H 0.417 0.583 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.270 0.730 47 H 0.093 0.907 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.893 -3.020 5.320 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.139 4.139 4 H 0.113 0.887 5 C -0.176 4.176 6 C -0.211 4.211 7 H 0.161 0.839 8 C 0.356 3.644 9 O -0.471 6.471 10 N -0.381 5.381 11 C -0.016 4.016 12 C -0.130 4.130 13 C 0.055 3.945 14 H 0.094 0.906 15 C -0.220 4.220 16 N -0.360 5.360 17 C 0.323 3.677 18 O -0.442 6.442 19 C -0.282 4.282 20 S 0.075 5.925 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.818 3.182 26 H -0.186 1.186 27 H -0.206 1.206 28 H -0.188 1.188 29 C -0.014 4.014 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.255 0.745 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.079 0.921 47 H 0.111 0.889 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -28.004 -1.034 4.273 28.347 hybrid contribution 0.648 -1.568 1.055 1.997 sum -27.357 -2.601 5.328 27.992 Atomic orbital electron populations 1.21749 0.94918 1.02298 1.01825 1.21160 0.96488 0.92148 1.02999 1.22509 0.90607 0.99543 1.01213 0.88747 1.23195 1.00704 1.03250 0.90438 1.22286 0.98192 0.98147 1.02518 0.83896 1.19749 0.79708 0.85924 0.79006 1.90674 1.53824 1.51269 1.51295 1.49576 1.03803 1.29815 1.54862 1.23236 0.79568 1.00664 0.98164 1.23070 0.91114 0.98382 1.00439 1.20807 0.85999 0.87293 1.00433 0.90610 1.22153 1.01599 0.98438 0.99834 1.45767 1.15595 1.25141 1.49519 1.19973 0.82588 0.86316 0.78779 1.90701 1.77616 1.35919 1.39974 1.23388 0.98354 1.01014 1.05429 1.85578 1.12864 1.32018 1.62068 1.23186 1.04647 1.07430 1.34176 0.89872 1.26094 0.98176 1.00683 0.94134 1.70175 1.18805 1.35581 1.30196 0.85041 0.76902 0.77483 0.78811 1.18599 1.20590 1.18753 1.23082 0.86881 0.92724 0.98743 0.92481 0.91470 0.93266 0.90154 0.91177 0.85311 0.89475 0.87981 0.89101 0.85022 0.90749 0.94542 0.89959 0.74548 0.87385 0.87039 0.92075 0.88857 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.87 71.98 0.71 -0.72 16 2 C -0.09 -0.90 6.22 30.59 0.19 -0.71 16 3 C -0.12 -1.73 5.25 -10.77 -0.06 -1.78 16 4 H 0.09 1.81 7.60 -2.38 -0.02 1.79 16 5 C -0.14 -1.76 9.88 30.60 0.30 -1.46 16 6 C -0.19 -2.83 5.74 -11.51 -0.07 -2.89 16 7 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 8 C 0.56 12.09 7.86 87.66 0.69 12.78 16 9 O -0.59 -17.64 17.03 -3.02 -0.05 -17.69 16 10 N -0.65 -10.79 3.69 -858.81 -3.17 -13.96 16 11 C 0.11 1.23 7.98 83.09 0.66 1.89 16 12 C -0.11 -1.20 3.64 -10.54 -0.04 -1.23 16 13 C 0.16 2.68 2.47 44.99 0.11 2.80 16 14 H 0.08 1.62 7.34 -2.39 -0.02 1.61 16 15 C -0.16 -2.75 9.29 71.98 0.67 -2.08 16 16 N -0.71 -13.96 5.08 -442.53 -2.25 -16.20 16 17 C 0.54 17.54 7.81 87.66 0.68 18.22 16 18 O -0.56 -23.99 15.52 -3.02 -0.05 -24.04 16 19 C -0.13 -4.74 6.16 71.24 0.44 -4.31 16 20 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 21 C -0.55 -30.33 9.50 67.95 0.65 -29.69 16 22 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 23 C 0.01 0.78 5.49 84.86 0.47 1.24 16 24 N -0.91 -55.08 13.22 21.65 0.29 -54.79 16 25 Si 1.00 42.58 29.55 68.60 2.03 44.61 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 29 C 0.11 1.51 7.27 83.19 0.61 2.12 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.08 0.59 7.87 -2.39 -0.02 0.57 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.13 1.04 8.03 -2.39 -0.02 1.02 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 1.14 7.94 -2.39 -0.02 1.12 16 39 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.10 7.48 -2.39 -0.02 1.08 16 43 H 0.42 5.27 8.60 -92.71 -0.80 4.47 16 44 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 45 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 46 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 48 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -81.53 415.36 1.80 -79.73 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.15 Total: 17.47 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 6.01 Total: -5.82 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -5.13 Total: -84.96 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.10 Total: -41.73 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -81.53 1.80 -79.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756131553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.098 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds