Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47343 * 2 1 4 4 H 1.09003 * 109.47697 * 54.99862 * 3 2 1 5 5 C 1.50703 * 109.47169 * 174.99637 * 3 2 1 6 6 H 1.08008 * 120.00029 * 119.99846 * 5 3 2 7 7 C 1.37872 * 120.00283 * 300.00485 * 5 3 2 8 8 N 1.31519 * 119.99630 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00286 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47279 * 119.99449 * 9 7 5 12 12 H 1.48497 * 109.47410 * 239.99424 * 9 7 5 13 13 N 1.46502 * 109.47133 * 294.99866 * 3 2 1 14 14 C 1.34774 * 120.00035 * 85.00394 * 13 3 2 15 15 O 1.21641 * 119.99948 * 5.38413 * 14 13 3 16 16 C 1.47084 * 119.99568 * 185.38981 * 14 13 3 17 17 C 1.39337 * 120.58213 * 174.65805 * 16 14 13 18 18 C 1.39477 * 118.95847 * 180.22792 * 17 16 14 19 19 C 1.35759 * 120.12896 * 359.48993 * 18 17 16 20 20 N 1.35430 * 121.22880 * 0.51937 * 19 18 17 21 21 C 1.46497 * 119.47255 * 179.71058 * 20 19 18 22 22 C 1.50697 * 109.47524 * 270.02691 * 21 20 19 23 23 C 1.38234 * 120.00304 * 269.72622 * 22 21 20 24 24 C 1.38232 * 120.00098 * 179.76667 * 23 22 21 25 25 C 1.38232 * 119.99896 * 0.50293 * 24 23 22 26 26 C 1.38230 * 120.00189 * 359.74998 * 25 24 23 27 27 C 1.38234 * 119.99955 * 90.00031 * 22 21 20 28 28 C 1.34659 * 121.06163 * 359.74007 * 20 19 18 29 29 O 1.21884 * 120.10837 * 179.97438 * 28 20 19 30 30 H 1.09000 * 109.46672 * 300.00558 * 1 2 3 31 31 H 1.09006 * 109.46715 * 59.99806 * 1 2 3 32 32 H 1.08991 * 109.47576 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47066 * 239.99075 * 2 1 3 34 34 H 1.09006 * 109.46715 * 120.00194 * 2 1 3 35 35 H 0.97008 * 119.99694 * 180.02562 * 8 7 5 36 36 H 0.97004 * 119.99877 * 265.00041 * 13 3 2 37 37 H 1.08002 * 120.52288 * 359.95315 * 17 16 14 38 38 H 1.07998 * 119.93084 * 179.72750 * 18 17 16 39 39 H 1.08000 * 119.38331 * 180.24023 * 19 18 17 40 40 H 1.09001 * 109.46741 * 30.02843 * 21 20 19 41 41 H 1.08997 * 109.47513 * 150.02289 * 21 20 19 42 42 H 1.08001 * 119.99390 * 359.97438 * 23 22 21 43 43 H 1.08004 * 119.99631 * 180.22844 * 24 23 22 44 44 H 1.08008 * 119.99615 * 179.72269 * 25 24 23 45 45 H 1.08001 * 119.99974 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.00438 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1239 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4061 0.3372 2.1733 9 14 6.0050 0.8797 1.3813 10 1 6.5989 1.5439 0.1932 11 1 6.4000 1.6154 2.6093 12 1 6.4962 -0.5193 1.4629 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3039 2.7191 -0.4025 16 6 0.0008 3.2169 -2.6590 17 6 -1.2940 3.7054 -2.8216 18 6 -1.6717 4.2174 -4.0629 19 6 -0.7819 4.2451 -5.0879 20 7 0.4781 3.7722 -4.9369 21 6 1.4048 3.8151 -6.0707 22 6 1.2863 2.5400 -6.8650 23 6 2.0872 1.4564 -6.5563 24 6 1.9751 0.2851 -7.2818 25 6 1.0695 0.2009 -8.3227 26 6 0.2723 1.2861 -8.6349 27 6 0.3808 2.4557 -7.9061 28 6 0.8927 3.2624 -3.7615 29 8 2.0305 2.8411 -3.6451 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.8292 -0.0607 2.9503 36 1 2.2721 2.1230 -1.9978 37 1 -1.9956 3.6838 -2.0008 38 1 -2.6727 4.5960 -4.2076 39 1 -1.0860 4.6478 -6.0427 40 1 1.1595 4.6645 -6.7084 41 1 2.4252 3.9202 -5.7023 42 1 2.7981 1.5239 -5.7460 43 1 2.5983 -0.5627 -7.0381 44 1 0.9852 -0.7128 -8.8925 45 1 -0.4349 1.2204 -9.4485 46 1 -0.2421 3.3036 -8.1499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547274572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = -8.216622 kcal Electronic energy + Delta-G solvation = -29618.123672 eV Core-core repulsion = 25666.280939 eV Total energy + Delta-G solvation = -3951.842733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60796 -39.40294 -38.48449 -37.07515 -35.13596 -34.53754 -32.09720 -31.71451 -31.15456 -30.75908 -29.88238 -27.08268 -26.88846 -24.65088 -23.08530 -22.83129 -22.65877 -21.55500 -20.48426 -19.26977 -17.92438 -17.49686 -17.12443 -16.99071 -16.19803 -15.93410 -15.36228 -15.28688 -15.06583 -14.98228 -14.53011 -14.14165 -14.05724 -13.65904 -13.41777 -13.19947 -12.88141 -12.67827 -12.59518 -12.43805 -12.30534 -12.15199 -11.84950 -11.46176 -11.33544 -11.25166 -11.12673 -10.82649 -10.71404 -10.17755 -10.09176 -9.99242 -9.87121 -9.50553 -9.17642 -9.11960 -8.94498 -8.81908 -8.34291 -8.04422 -7.49702 -5.97599 -4.04559 0.50297 0.94550 1.15815 1.81310 2.48036 3.21600 3.33216 3.40351 3.45415 3.56490 4.20940 4.21941 4.28723 4.38421 4.41755 4.57506 4.66171 4.73261 4.85199 4.92709 4.95154 5.15475 5.18897 5.28400 5.33380 5.38716 5.54498 5.67888 5.80768 5.84469 5.94420 6.15496 6.26962 6.30353 6.32937 6.38387 6.50258 6.57441 6.72617 6.78082 6.88169 7.18279 7.34269 7.52636 7.69329 7.81858 7.89388 8.01963 8.12472 8.35052 8.96283 9.02484 9.45883 9.64048 11.08161 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.003507 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.720156 B = 7982.065008 C = 9187.770334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.266 3.734 4 H 0.048 0.952 5 C -0.525 4.525 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.691 5.691 14 C 0.557 3.443 15 O -0.563 6.563 16 C -0.252 4.252 17 C 0.039 3.961 18 C -0.234 4.234 19 C 0.145 3.855 20 N -0.488 5.488 21 C 0.130 3.870 22 C -0.118 4.118 23 C -0.086 4.086 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.127 4.127 27 C -0.105 4.105 28 C 0.527 3.473 29 O -0.529 6.529 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.023 0.977 33 H 0.030 0.970 34 H 0.099 0.901 35 H 0.262 0.738 36 H 0.405 0.595 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 6.593 -24.243 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.164 3.836 4 H 0.066 0.934 5 C -0.563 4.563 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.346 5.346 14 C 0.342 3.658 15 O -0.445 6.445 16 C -0.259 4.259 17 C 0.016 3.984 18 C -0.258 4.258 19 C 0.016 3.984 20 N -0.197 5.197 21 C 0.010 3.990 22 C -0.119 4.119 23 C -0.104 4.104 24 C -0.139 4.139 25 C -0.130 4.130 26 C -0.145 4.145 27 C -0.124 4.124 28 C 0.329 3.671 29 O -0.410 6.410 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.248 0.752 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.153 0.847 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.168 6.230 -23.345 25.843 hybrid contribution 1.050 -0.070 -0.344 1.107 sum -8.119 6.160 -23.689 25.788 Atomic orbital electron populations 1.21809 0.98598 0.97987 1.00995 1.21919 0.92450 0.99987 1.02167 1.18772 0.94176 0.89066 0.81585 0.93381 1.21324 0.90944 1.38115 1.05949 0.92052 1.24879 0.98433 0.95042 0.95452 1.69920 1.34803 1.38262 1.09373 0.86428 0.85240 0.77644 0.78016 1.19745 1.20969 1.20970 1.46960 1.14612 1.53612 1.19448 1.17378 0.83343 0.79102 0.85968 1.90731 1.54924 1.60465 1.38374 1.21524 0.95957 1.12240 0.96189 1.21995 0.94441 0.85349 0.96632 1.20640 1.01127 1.10850 0.93138 1.22032 0.83469 0.92638 1.00251 1.45528 1.11708 1.49917 1.12566 1.20903 0.96265 0.95915 0.85963 1.19931 0.98549 0.95992 0.97382 1.21369 0.98293 0.92258 0.98518 1.21272 0.98822 0.98048 0.95717 1.21251 0.95802 0.98583 0.97317 1.21100 0.99845 0.93396 1.00160 1.20998 0.97760 0.98147 0.95490 1.17176 0.88624 0.79359 0.81907 1.90676 1.19643 1.49025 1.81647 0.93107 0.94584 0.95821 0.95149 0.88272 0.92839 0.75168 0.83459 0.83268 0.82166 0.88177 0.86903 0.84679 0.85631 0.85992 0.85971 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.59 37.16 0.32 -2.96 16 2 C -0.13 -3.34 5.45 -26.73 -0.15 -3.49 16 3 C 0.27 7.40 2.25 -69.08 -0.16 7.25 16 4 H 0.05 1.51 7.50 -51.93 -0.39 1.12 16 5 C -0.52 -15.18 8.73 -34.44 -0.30 -15.49 16 6 H 0.06 1.76 7.74 -52.48 -0.41 1.35 16 7 C 0.06 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -26.05 11.29 55.43 0.63 -25.42 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.69 -17.06 4.93 -56.12 -0.28 -17.34 16 14 C 0.56 12.72 6.10 -12.67 -0.08 12.65 16 15 O -0.56 -14.11 13.98 5.24 0.07 -14.03 16 16 C -0.25 -4.45 5.92 -104.51 -0.62 -5.07 16 17 C 0.04 0.52 9.70 -38.71 -0.38 0.15 16 18 C -0.23 -2.05 9.99 -40.01 -0.40 -2.45 16 19 C 0.14 1.12 10.25 -16.85 -0.17 0.95 16 20 N -0.49 -5.35 2.56 -120.64 -0.31 -5.66 16 21 C 0.13 1.13 5.44 -5.20 -0.03 1.10 16 22 C -0.12 -1.13 5.46 -104.63 -0.57 -1.70 16 23 C -0.09 -0.99 9.70 -39.58 -0.38 -1.38 16 24 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 25 C -0.11 -0.98 10.05 -39.59 -0.40 -1.38 16 26 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 27 C -0.11 -0.82 9.70 -39.58 -0.38 -1.20 16 28 C 0.53 8.50 7.43 -14.92 -0.11 8.39 16 29 O -0.53 -9.98 12.74 5.02 0.06 -9.91 16 30 H 0.05 1.27 7.92 -51.93 -0.41 0.86 16 31 H 0.04 0.85 5.76 -51.93 -0.30 0.55 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 2.83 5.95 -51.93 -0.31 2.52 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 36 H 0.41 9.77 5.14 -40.82 -0.21 9.56 16 37 H 0.15 1.94 7.70 -52.49 -0.40 1.53 16 38 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.16 0.49 8.02 -52.49 -0.42 0.07 16 40 H 0.10 0.48 7.94 -51.93 -0.41 0.07 16 41 H 0.11 1.13 7.32 -51.93 -0.38 0.75 16 42 H 0.14 1.77 7.53 -52.49 -0.40 1.38 16 43 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 44 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -35.74 379.90 -9.94 -45.68 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.13 Total: 10.03 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -4.69 Total: -5.93 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.04 Total: -48.42 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.14 Total: -23.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.74 -9.94 -45.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.462 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds