Wall clock time and date at job start Sat Apr 11 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47343 * 2 1 4 4 H 1.09003 * 109.47697 * 54.99862 * 3 2 1 5 5 C 1.50703 * 109.47169 * 174.99637 * 3 2 1 6 6 H 1.08008 * 120.00029 * 119.99846 * 5 3 2 7 7 C 1.37872 * 120.00283 * 300.00485 * 5 3 2 8 8 N 1.31519 * 119.99630 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00286 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47279 * 119.99449 * 9 7 5 12 12 H 1.48497 * 109.47410 * 239.99424 * 9 7 5 13 13 N 1.46502 * 109.47133 * 294.99866 * 3 2 1 14 14 C 1.34774 * 120.00035 * 85.00394 * 13 3 2 15 15 O 1.21641 * 119.99948 * 5.38413 * 14 13 3 16 16 C 1.47084 * 119.99568 * 185.38981 * 14 13 3 17 17 C 1.39337 * 120.58213 * 174.65805 * 16 14 13 18 18 C 1.39477 * 118.95847 * 180.22792 * 17 16 14 19 19 C 1.35759 * 120.12896 * 359.48993 * 18 17 16 20 20 N 1.35430 * 121.22880 * 0.51937 * 19 18 17 21 21 C 1.46497 * 119.47255 * 179.71058 * 20 19 18 22 22 C 1.50697 * 109.47524 * 270.02691 * 21 20 19 23 23 C 1.38234 * 120.00304 * 269.72622 * 22 21 20 24 24 C 1.38232 * 120.00098 * 179.76667 * 23 22 21 25 25 C 1.38232 * 119.99896 * 0.50293 * 24 23 22 26 26 C 1.38230 * 120.00189 * 359.74998 * 25 24 23 27 27 C 1.38234 * 119.99955 * 90.00031 * 22 21 20 28 28 C 1.34659 * 121.06163 * 359.74007 * 20 19 18 29 29 O 1.21884 * 120.10837 * 179.97438 * 28 20 19 30 30 H 1.09000 * 109.46672 * 300.00558 * 1 2 3 31 31 H 1.09006 * 109.46715 * 59.99806 * 1 2 3 32 32 H 1.08991 * 109.47576 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47066 * 239.99075 * 2 1 3 34 34 H 1.09006 * 109.46715 * 120.00194 * 2 1 3 35 35 H 0.97008 * 119.99694 * 180.02562 * 8 7 5 36 36 H 0.97004 * 119.99877 * 265.00041 * 13 3 2 37 37 H 1.08002 * 120.52288 * 359.95315 * 17 16 14 38 38 H 1.07998 * 119.93084 * 179.72750 * 18 17 16 39 39 H 1.08000 * 119.38331 * 180.24023 * 19 18 17 40 40 H 1.09001 * 109.46741 * 30.02843 * 21 20 19 41 41 H 1.08997 * 109.47513 * 150.02289 * 21 20 19 42 42 H 1.08001 * 119.99390 * 359.97438 * 23 22 21 43 43 H 1.08004 * 119.99631 * 180.22844 * 24 23 22 44 44 H 1.08008 * 119.99615 * 179.72269 * 25 24 23 45 45 H 1.08001 * 119.99974 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.00438 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1239 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4061 0.3372 2.1733 9 14 6.0050 0.8797 1.3813 10 1 6.5989 1.5439 0.1932 11 1 6.4000 1.6154 2.6093 12 1 6.4962 -0.5193 1.4629 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3039 2.7191 -0.4025 16 6 0.0008 3.2169 -2.6590 17 6 -1.2940 3.7054 -2.8216 18 6 -1.6717 4.2174 -4.0629 19 6 -0.7819 4.2451 -5.0879 20 7 0.4781 3.7722 -4.9369 21 6 1.4048 3.8151 -6.0707 22 6 1.2863 2.5400 -6.8650 23 6 2.0872 1.4564 -6.5563 24 6 1.9751 0.2851 -7.2818 25 6 1.0695 0.2009 -8.3227 26 6 0.2723 1.2861 -8.6349 27 6 0.3808 2.4557 -7.9061 28 6 0.8927 3.2624 -3.7615 29 8 2.0305 2.8411 -3.6451 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.8292 -0.0607 2.9503 36 1 2.2721 2.1230 -1.9978 37 1 -1.9956 3.6838 -2.0008 38 1 -2.6727 4.5960 -4.2076 39 1 -1.0860 4.6478 -6.0427 40 1 1.1595 4.6645 -6.7084 41 1 2.4252 3.9202 -5.7023 42 1 2.7981 1.5239 -5.7460 43 1 2.5983 -0.5627 -7.0381 44 1 0.9852 -0.7128 -8.8925 45 1 -0.4349 1.2204 -9.4485 46 1 -0.2421 3.3036 -8.1499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547274572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:39 Heat of formation + Delta-G solvation = -31.554007 kcal Electronic energy + Delta-G solvation = -29619.135657 eV Core-core repulsion = 25666.280939 eV Total energy + Delta-G solvation = -3952.854718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61630 -40.48859 -39.82113 -38.20636 -36.95087 -35.70165 -34.20956 -32.82980 -32.38651 -31.81181 -31.00306 -28.98647 -27.81037 -25.99670 -24.73593 -23.97357 -23.45622 -22.50989 -21.97747 -21.22600 -19.43430 -18.53835 -18.27972 -17.85082 -17.63088 -17.07119 -16.89436 -16.59990 -16.17848 -16.06848 -15.94026 -15.69091 -15.34556 -14.90868 -14.64633 -14.31837 -14.26278 -13.98186 -13.62341 -13.53456 -13.43864 -13.33972 -13.22429 -13.05502 -12.98374 -12.88924 -12.72533 -12.19399 -12.13669 -12.08776 -11.90478 -11.67399 -11.20815 -11.04403 -10.99336 -10.75474 -10.53363 -9.84321 -9.79675 -9.56670 -9.00392 -8.19497 -6.36556 -0.47986 0.25373 0.48019 0.86053 1.37514 1.38426 1.52024 1.61354 1.93037 2.35481 2.80198 2.83352 2.93222 3.08113 3.53213 3.69934 3.82333 3.90927 4.03771 4.09003 4.14888 4.23731 4.28659 4.34563 4.42626 4.50371 4.51408 4.62664 4.68482 4.72697 4.90683 4.99804 5.01750 5.05199 5.13813 5.16836 5.30972 5.39408 5.50998 5.51660 5.55539 5.59987 5.61557 5.65225 5.78238 5.96267 5.99141 6.08159 6.14693 6.70334 6.84180 7.16630 7.31278 7.69150 8.86554 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.003507 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.720156 B = 7982.065008 C = 9187.770334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.118 4.118 3 C 0.274 3.726 4 H -0.001 1.001 5 C -0.551 4.551 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.912 5.912 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.275 1.275 12 H -0.271 1.271 13 N -0.702 5.702 14 C 0.552 3.448 15 O -0.602 6.602 16 C -0.324 4.324 17 C 0.068 3.932 18 C -0.239 4.239 19 C 0.184 3.816 20 N -0.480 5.480 21 C 0.128 3.872 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.145 4.145 25 C -0.118 4.118 26 C -0.127 4.127 27 C -0.094 4.094 28 C 0.520 3.480 29 O -0.576 6.576 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.267 0.733 36 H 0.406 0.594 37 H 0.142 0.858 38 H 0.200 0.800 39 H 0.235 0.765 40 H 0.160 0.840 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.139 0.861 45 H 0.155 0.845 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 8.629 -28.966 32.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 C 0.170 3.830 4 H 0.016 0.984 5 C -0.589 4.589 6 H 0.072 0.928 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.194 1.194 11 H -0.201 1.201 12 H -0.197 1.197 13 N -0.359 5.359 14 C 0.341 3.659 15 O -0.487 6.487 16 C -0.331 4.331 17 C 0.044 3.956 18 C -0.260 4.260 19 C 0.055 3.945 20 N -0.185 5.185 21 C 0.009 3.991 22 C -0.126 4.126 23 C -0.138 4.138 24 C -0.163 4.163 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.112 4.112 28 C 0.324 3.676 29 O -0.461 6.461 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.250 0.750 37 H 0.160 0.840 38 H 0.217 0.783 39 H 0.251 0.749 40 H 0.178 0.822 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.173 0.827 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.702 8.285 -28.120 31.564 hybrid contribution 1.662 -0.607 0.937 2.002 sum -10.040 7.678 -27.182 29.977 Atomic orbital electron populations 1.21619 0.96668 0.99434 1.00032 1.21751 0.94126 0.99009 1.00833 1.18385 0.93594 0.89288 0.81695 0.98350 1.21548 0.91682 1.39158 1.06553 0.92775 1.25778 1.03681 0.94136 0.94697 1.70048 1.36956 1.38272 1.09746 0.85302 0.78737 0.78205 0.78116 1.19424 1.20059 1.19655 1.46901 1.16005 1.54745 1.18229 1.18166 0.81986 0.77841 0.87900 1.90669 1.55561 1.62043 1.40456 1.20983 0.98751 1.18716 0.94687 1.22290 0.92107 0.82395 0.98792 1.21166 1.03648 1.10347 0.90855 1.23293 0.80861 0.87841 1.02548 1.45587 1.13462 1.48056 1.11441 1.21195 0.94943 0.97657 0.85347 1.20040 0.98842 0.95349 0.98403 1.21313 0.99463 0.94299 0.98677 1.21361 1.00145 0.97745 0.97033 1.21539 0.95315 1.00152 0.96604 1.21567 0.99462 0.92817 1.00572 1.21466 0.96712 0.99472 0.93561 1.17010 0.87732 0.79607 0.83251 1.90625 1.21451 1.51501 1.82567 0.94923 0.94624 0.92921 0.95260 0.90421 0.92370 0.75041 0.84037 0.78269 0.74885 0.82246 0.89509 0.88329 0.86392 0.84279 0.82732 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 8.59 71.98 0.62 -5.48 16 2 C -0.12 -6.71 5.45 30.59 0.17 -6.55 16 3 C 0.27 16.60 2.25 44.24 0.10 16.69 16 4 H 0.00 -0.09 7.50 -2.39 -0.02 -0.11 16 5 C -0.55 -34.16 8.73 25.60 0.22 -33.94 16 6 H 0.05 3.34 7.74 -2.91 -0.02 3.32 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -56.20 11.29 21.45 0.24 -55.96 16 9 Si 0.97 46.57 29.54 68.60 2.03 48.60 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.70 -38.07 4.93 -449.71 -2.22 -40.29 16 14 C 0.55 27.36 6.10 86.56 0.53 27.89 16 15 O -0.60 -32.74 13.98 -4.16 -0.06 -32.80 16 16 C -0.32 -11.92 5.92 -19.79 -0.12 -12.04 16 17 C 0.07 1.73 9.70 22.83 0.22 1.95 16 18 C -0.24 -2.83 9.99 21.99 0.22 -2.61 16 19 C 0.18 1.58 10.25 83.56 0.86 2.44 16 20 N -0.48 -9.01 2.56 -653.80 -1.67 -10.68 16 21 C 0.13 1.81 5.44 85.63 0.47 2.28 16 22 C -0.13 -2.10 5.46 -19.87 -0.11 -2.21 16 23 C -0.12 -2.90 9.70 22.27 0.22 -2.69 16 24 C -0.14 -3.15 10.05 22.27 0.22 -2.93 16 25 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 26 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16 27 C -0.09 -0.92 9.70 22.27 0.22 -0.70 16 28 C 0.52 17.23 7.43 85.16 0.63 17.86 16 29 O -0.58 -23.75 12.74 -4.94 -0.06 -23.81 16 30 H 0.03 1.73 7.92 -2.39 -0.02 1.71 16 31 H 0.03 1.78 5.76 -2.38 -0.01 1.76 16 32 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 4.73 5.95 -2.38 -0.01 4.71 16 35 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 36 H 0.41 21.67 5.14 -92.78 -0.48 21.19 16 37 H 0.14 3.68 7.70 -2.91 -0.02 3.66 16 38 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.23 -1.24 8.02 -2.91 -0.02 -1.26 16 40 H 0.16 0.38 7.94 -2.39 -0.02 0.36 16 41 H 0.09 1.75 7.32 -2.39 -0.02 1.73 16 42 H 0.10 3.04 7.53 -2.91 -0.02 3.02 16 43 H 0.12 2.52 8.06 -2.91 -0.02 2.49 16 44 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 46 H 0.17 0.02 8.06 -2.91 -0.02 0.00 16 Total: -1.00 -92.41 379.90 4.14 -88.27 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.53 Total: 28.05 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.36 Total: -1.39 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -3.65 Total: -106.92 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -0.12 Total: -56.61 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -92.41 4.14 -88.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.720 kcal (2) G-P(sol) polarization free energy of solvation -92.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds