Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46827 * 2 1 4 4 H 1.09000 * 109.47340 * 304.57106 * 3 2 1 5 5 C 1.50700 * 109.47139 * 184.56920 * 3 2 1 6 6 H 1.07998 * 120.00101 * 245.29662 * 5 3 2 7 7 C 1.37875 * 119.99932 * 65.29313 * 5 3 2 8 8 N 1.31518 * 120.00021 * 5.74639 * 7 5 3 9 9 Si 1.86799 * 120.00180 * 185.73983 * 7 5 3 10 10 H 1.48502 * 109.46952 * 94.99591 * 9 7 5 11 11 H 1.48499 * 109.47565 * 215.00197 * 9 7 5 12 12 H 1.48504 * 109.47184 * 335.00248 * 9 7 5 13 13 N 1.46505 * 109.47230 * 64.56893 * 3 2 1 14 14 C 1.34778 * 119.99975 * 274.99842 * 13 3 2 15 15 O 1.21644 * 119.99682 * 4.63490 * 14 13 3 16 16 C 1.47078 * 119.99498 * 184.63435 * 14 13 3 17 17 C 1.39342 * 120.58290 * 174.19887 * 16 14 13 18 18 C 1.39471 * 118.95951 * 179.97438 * 17 16 14 19 19 C 1.35760 * 120.12847 * 0.02562 * 18 17 16 20 20 N 1.35421 * 121.23109 * 359.97356 * 19 18 17 21 21 C 1.46504 * 119.47107 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.46973 * 90.00110 * 21 20 19 23 23 C 1.38235 * 120.00079 * 269.72737 * 22 21 20 24 24 C 1.38240 * 120.00222 * 179.76602 * 23 22 21 25 25 C 1.38237 * 119.99524 * 0.50954 * 24 23 22 26 26 C 1.38237 * 120.00028 * 359.74592 * 25 24 23 27 27 C 1.38229 * 119.99997 * 90.00432 * 22 21 20 28 28 C 1.34661 * 121.06221 * 359.70823 * 20 19 18 29 29 O 1.21886 * 120.10522 * 180.28740 * 28 20 19 30 30 H 1.09006 * 109.47582 * 59.99738 * 1 2 3 31 31 H 1.09006 * 109.47626 * 300.00099 * 1 2 3 32 32 H 1.09002 * 109.47267 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47315 * 119.99734 * 2 1 3 34 34 H 1.08998 * 109.46865 * 240.00223 * 2 1 3 35 35 H 0.97000 * 119.99700 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99623 * 94.99858 * 13 3 2 37 37 H 1.08008 * 120.52024 * 0.02562 * 17 16 14 38 38 H 1.07998 * 119.93211 * 179.97438 * 18 17 16 39 39 H 1.07999 * 119.37712 * 180.02562 * 19 18 17 40 40 H 1.08997 * 109.47687 * 210.00194 * 21 20 19 41 41 H 1.08995 * 109.46890 * 330.00410 * 21 20 19 42 42 H 1.08003 * 119.99960 * 0.02562 * 23 22 21 43 43 H 1.07992 * 119.99927 * 180.23533 * 24 23 22 44 44 H 1.07994 * 119.99904 * 179.72603 * 25 24 23 45 45 H 1.07999 * 119.99807 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.00524 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6112 1.9795 -0.8462 5 6 3.5426 1.4441 -0.1132 6 1 4.1453 1.8129 0.7036 7 6 4.1481 0.9747 -1.2595 8 7 3.4159 0.6316 -2.2967 9 14 6.0085 0.8263 -1.3396 10 1 6.4103 -0.5586 -0.9849 11 1 6.4713 1.1392 -2.7154 12 1 6.6228 1.7805 -0.3817 13 7 1.6434 2.1007 1.2474 14 6 0.4253 2.6678 1.3525 15 8 -0.3759 2.5606 0.4435 16 6 0.0650 3.4163 2.5662 17 6 -1.1423 4.1081 2.6402 18 6 -1.4501 4.8063 3.8077 19 6 -0.5809 4.8068 4.8506 20 7 0.5941 4.1367 4.7857 21 6 1.5031 4.1628 5.9343 22 6 1.1831 3.0130 6.8544 23 6 0.2672 3.1797 7.8762 24 6 -0.0300 2.1236 8.7173 25 6 0.5966 0.9038 8.5430 26 6 1.5165 0.7386 7.5244 27 6 1.8097 1.7932 6.6801 28 6 0.9375 3.4415 3.6847 29 8 1.9972 2.8403 3.6471 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 3.8419 0.3017 -3.1033 36 1 2.2577 2.1282 1.9977 37 1 -1.8294 4.1031 1.8068 38 1 -2.3813 5.3482 3.8819 39 1 -0.8317 5.3511 5.7491 40 1 2.5320 4.0735 5.5855 41 1 1.3821 5.1030 6.4721 42 1 -0.2194 4.1339 8.0149 43 1 -0.7484 2.2529 9.5132 44 1 0.3678 0.0801 9.2028 45 1 2.0063 -0.2142 7.3885 46 1 2.5283 1.6640 5.8843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547274573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = -8.127780 kcal Electronic energy + Delta-G solvation = -29559.168581 eV Core-core repulsion = 25607.329700 eV Total energy + Delta-G solvation = -3951.838880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.60727 -39.41375 -38.50596 -37.07364 -35.12660 -34.51080 -32.08196 -31.72982 -31.16760 -30.82987 -29.85660 -27.08636 -26.86028 -24.65534 -23.09084 -22.81430 -22.66699 -21.56382 -20.53211 -19.25620 -17.93209 -17.49890 -17.13056 -16.98596 -16.18474 -15.94534 -15.35293 -15.29824 -15.09716 -14.96637 -14.52778 -14.21126 -14.02184 -13.67321 -13.42013 -13.26734 -12.89817 -12.66978 -12.59234 -12.42880 -12.25982 -12.15655 -11.79566 -11.45035 -11.30633 -11.26471 -11.17708 -10.87885 -10.65265 -10.20364 -10.10597 -9.98950 -9.86768 -9.48664 -9.18985 -9.12820 -8.90443 -8.85501 -8.34242 -8.03510 -7.49948 -5.99420 -4.04124 0.50516 0.93511 1.14442 1.81575 2.48135 3.21369 3.34047 3.40272 3.44196 3.55355 4.18613 4.23854 4.29902 4.36628 4.42770 4.56856 4.65424 4.72100 4.84879 4.92015 4.95129 5.14865 5.19011 5.27634 5.33376 5.37505 5.54293 5.66646 5.79520 5.84665 5.94600 6.14252 6.25897 6.29136 6.32567 6.38633 6.52439 6.60120 6.71279 6.79845 6.88380 7.20172 7.35393 7.53674 7.66556 7.81746 7.89086 7.98714 8.10222 8.28086 8.96844 9.02391 9.45702 9.63596 11.08704 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.003372 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.454599 B = 8302.691989 C = 9325.845731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.267 3.733 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.690 5.690 14 C 0.555 3.445 15 O -0.559 6.559 16 C -0.251 4.251 17 C 0.039 3.961 18 C -0.234 4.234 19 C 0.145 3.855 20 N -0.488 5.488 21 C 0.130 3.870 22 C -0.118 4.118 23 C -0.105 4.105 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.121 4.121 27 C -0.086 4.086 28 C 0.528 3.472 29 O -0.530 6.530 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.019 0.981 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.262 0.738 36 H 0.405 0.595 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.324 8.640 23.915 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.165 3.835 4 H 0.069 0.931 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.340 3.660 15 O -0.442 6.442 16 C -0.258 4.258 17 C 0.016 3.984 18 C -0.257 4.257 19 C 0.016 3.984 20 N -0.197 5.197 21 C 0.009 3.991 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.145 4.145 25 C -0.130 4.130 26 C -0.139 4.139 27 C -0.105 4.105 28 C 0.330 3.670 29 O -0.410 6.410 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.248 0.752 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.027 8.095 23.078 26.070 hybrid contribution 1.088 -0.104 0.349 1.147 sum -7.939 7.990 23.427 25.995 Atomic orbital electron populations 1.21859 0.98063 0.97722 1.01671 1.21834 0.92952 0.99949 1.01111 1.18772 0.94075 0.89011 0.81650 0.93081 1.21264 0.90814 1.42745 1.01803 0.92109 1.24884 0.98357 0.95284 0.95157 1.69981 1.35142 1.43559 1.03479 0.86501 0.85357 0.78374 0.77288 1.20639 1.21204 1.19850 1.46957 1.14822 1.53557 1.19232 1.17386 0.83548 0.79910 0.85173 1.90741 1.50410 1.62632 1.40377 1.21512 0.97952 1.09343 0.97037 1.21995 0.93431 0.86471 0.96530 1.20638 1.02353 1.08630 0.94120 1.22029 0.84652 0.92091 0.99640 1.45528 1.17281 1.41437 1.15468 1.20907 0.96022 0.97463 0.84662 1.19940 0.99133 0.95640 0.97119 1.21005 0.97215 0.99048 0.95108 1.21103 1.00310 0.93302 0.99776 1.21250 0.96381 0.97447 0.97891 1.21268 0.98175 0.99174 0.95295 1.21370 0.98758 0.92041 0.98298 1.17174 0.87618 0.80044 0.82213 1.90675 1.24571 1.45019 1.80770 0.93019 0.93825 0.96188 0.94959 0.90033 0.92792 0.75204 0.83447 0.83274 0.82175 0.86885 0.88159 0.86133 0.85963 0.86000 0.85665 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.45 37.16 0.31 -2.97 16 2 C -0.12 -3.15 5.49 -26.73 -0.15 -3.30 16 3 C 0.27 7.40 2.11 -69.08 -0.15 7.26 16 4 H 0.05 1.60 7.62 -51.93 -0.40 1.21 16 5 C -0.53 -15.23 8.67 -34.44 -0.30 -15.53 16 6 H 0.06 1.73 7.72 -52.49 -0.41 1.33 16 7 C 0.07 1.89 5.22 -17.82 -0.09 1.79 16 8 N -0.88 -26.21 11.97 55.43 0.66 -25.55 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.69 -16.96 4.93 -56.12 -0.28 -17.24 16 14 C 0.55 12.59 6.45 -12.67 -0.08 12.51 16 15 O -0.56 -13.87 13.18 5.24 0.07 -13.80 16 16 C -0.25 -4.41 5.92 -104.51 -0.62 -5.03 16 17 C 0.04 0.52 9.70 -38.71 -0.38 0.14 16 18 C -0.23 -2.04 9.99 -40.01 -0.40 -2.44 16 19 C 0.14 1.12 10.25 -16.86 -0.17 0.94 16 20 N -0.49 -5.33 2.56 -120.64 -0.31 -5.64 16 21 C 0.13 1.13 5.44 -5.19 -0.03 1.10 16 22 C -0.12 -1.12 5.46 -104.62 -0.57 -1.69 16 23 C -0.11 -0.80 9.70 -39.58 -0.38 -1.19 16 24 C -0.13 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 27 C -0.09 -0.98 9.68 -39.59 -0.38 -1.36 16 28 C 0.53 8.47 7.43 -14.92 -0.11 8.36 16 29 O -0.53 -9.93 12.67 5.02 0.06 -9.86 16 30 H 0.05 1.31 7.77 -51.93 -0.40 0.90 16 31 H 0.04 1.05 5.55 -51.93 -0.29 0.76 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 2.31 6.64 -51.93 -0.34 1.96 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.40 9.70 5.14 -40.82 -0.21 9.49 16 37 H 0.15 1.93 7.71 -52.48 -0.40 1.52 16 38 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.16 0.49 8.02 -52.49 -0.42 0.07 16 40 H 0.11 1.14 7.33 -51.93 -0.38 0.76 16 41 H 0.10 0.48 7.94 -51.93 -0.41 0.07 16 42 H 0.12 0.57 8.06 -52.48 -0.42 0.14 16 43 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.14 1.75 7.48 -52.49 -0.39 1.36 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -35.72 380.07 -9.92 -45.64 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.15 Total: 9.64 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -4.69 Total: -5.77 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.08 Total: -48.43 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.13 Total: -23.66 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.72 -9.92 -45.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.515 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds