Wall clock time and date at job start Sat Apr 11 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46827 * 2 1 4 4 H 1.09000 * 109.47340 * 304.57106 * 3 2 1 5 5 C 1.50700 * 109.47139 * 184.56920 * 3 2 1 6 6 H 1.07998 * 120.00101 * 245.29662 * 5 3 2 7 7 C 1.37875 * 119.99932 * 65.29313 * 5 3 2 8 8 N 1.31518 * 120.00021 * 5.74639 * 7 5 3 9 9 Si 1.86799 * 120.00180 * 185.73983 * 7 5 3 10 10 H 1.48502 * 109.46952 * 94.99591 * 9 7 5 11 11 H 1.48499 * 109.47565 * 215.00197 * 9 7 5 12 12 H 1.48504 * 109.47184 * 335.00248 * 9 7 5 13 13 N 1.46505 * 109.47230 * 64.56893 * 3 2 1 14 14 C 1.34778 * 119.99975 * 274.99842 * 13 3 2 15 15 O 1.21644 * 119.99682 * 4.63490 * 14 13 3 16 16 C 1.47078 * 119.99498 * 184.63435 * 14 13 3 17 17 C 1.39342 * 120.58290 * 174.19887 * 16 14 13 18 18 C 1.39471 * 118.95951 * 179.97438 * 17 16 14 19 19 C 1.35760 * 120.12847 * 0.02562 * 18 17 16 20 20 N 1.35421 * 121.23109 * 359.97356 * 19 18 17 21 21 C 1.46504 * 119.47107 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.46973 * 90.00110 * 21 20 19 23 23 C 1.38235 * 120.00079 * 269.72737 * 22 21 20 24 24 C 1.38240 * 120.00222 * 179.76602 * 23 22 21 25 25 C 1.38237 * 119.99524 * 0.50954 * 24 23 22 26 26 C 1.38237 * 120.00028 * 359.74592 * 25 24 23 27 27 C 1.38229 * 119.99997 * 90.00432 * 22 21 20 28 28 C 1.34661 * 121.06221 * 359.70823 * 20 19 18 29 29 O 1.21886 * 120.10522 * 180.28740 * 28 20 19 30 30 H 1.09006 * 109.47582 * 59.99738 * 1 2 3 31 31 H 1.09006 * 109.47626 * 300.00099 * 1 2 3 32 32 H 1.09002 * 109.47267 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47315 * 119.99734 * 2 1 3 34 34 H 1.08998 * 109.46865 * 240.00223 * 2 1 3 35 35 H 0.97000 * 119.99700 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99623 * 94.99858 * 13 3 2 37 37 H 1.08008 * 120.52024 * 0.02562 * 17 16 14 38 38 H 1.07998 * 119.93211 * 179.97438 * 18 17 16 39 39 H 1.07999 * 119.37712 * 180.02562 * 19 18 17 40 40 H 1.08997 * 109.47687 * 210.00194 * 21 20 19 41 41 H 1.08995 * 109.46890 * 330.00410 * 21 20 19 42 42 H 1.08003 * 119.99960 * 0.02562 * 23 22 21 43 43 H 1.07992 * 119.99927 * 180.23533 * 24 23 22 44 44 H 1.07994 * 119.99904 * 179.72603 * 25 24 23 45 45 H 1.07999 * 119.99807 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.00524 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6112 1.9795 -0.8462 5 6 3.5426 1.4441 -0.1132 6 1 4.1453 1.8129 0.7036 7 6 4.1481 0.9747 -1.2595 8 7 3.4159 0.6316 -2.2967 9 14 6.0085 0.8263 -1.3396 10 1 6.4103 -0.5586 -0.9849 11 1 6.4713 1.1392 -2.7154 12 1 6.6228 1.7805 -0.3817 13 7 1.6434 2.1007 1.2474 14 6 0.4253 2.6678 1.3525 15 8 -0.3759 2.5606 0.4435 16 6 0.0650 3.4163 2.5662 17 6 -1.1423 4.1081 2.6402 18 6 -1.4501 4.8063 3.8077 19 6 -0.5809 4.8068 4.8506 20 7 0.5941 4.1367 4.7857 21 6 1.5031 4.1628 5.9343 22 6 1.1831 3.0130 6.8544 23 6 0.2672 3.1797 7.8762 24 6 -0.0300 2.1236 8.7173 25 6 0.5966 0.9038 8.5430 26 6 1.5165 0.7386 7.5244 27 6 1.8097 1.7932 6.6801 28 6 0.9375 3.4415 3.6847 29 8 1.9972 2.8403 3.6471 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 3.8419 0.3017 -3.1033 36 1 2.2577 2.1282 1.9977 37 1 -1.8294 4.1031 1.8068 38 1 -2.3813 5.3482 3.8819 39 1 -0.8317 5.3511 5.7491 40 1 2.5320 4.0735 5.5855 41 1 1.3821 5.1030 6.4721 42 1 -0.2194 4.1339 8.0149 43 1 -0.7484 2.2529 9.5132 44 1 0.3678 0.0801 9.2028 45 1 2.0063 -0.2142 7.3885 46 1 2.5283 1.6640 5.8843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547274573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:42 Heat of formation + Delta-G solvation = -31.371072 kcal Electronic energy + Delta-G solvation = -29560.176485 eV Core-core repulsion = 25607.329700 eV Total energy + Delta-G solvation = -3952.846785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61055 -40.49800 -39.82474 -38.19786 -36.90743 -35.69616 -34.19769 -32.90101 -32.38055 -31.81206 -30.97501 -28.96909 -27.80755 -25.98181 -24.74052 -23.96609 -23.46027 -22.52971 -21.99745 -21.20588 -19.43695 -18.53403 -18.25359 -17.84939 -17.62465 -17.10733 -16.84868 -16.60083 -16.23424 -16.04753 -15.92591 -15.69566 -15.34135 -14.97553 -14.64023 -14.31956 -14.25775 -13.83622 -13.62240 -13.51611 -13.45587 -13.34242 -13.27413 -13.05792 -12.98400 -12.90658 -12.67072 -12.22307 -12.13736 -12.09136 -11.90490 -11.66191 -11.21183 -11.04133 -10.98645 -10.70090 -10.55166 -9.84379 -9.79540 -9.55554 -8.99658 -8.21604 -6.36156 -0.47398 0.25524 0.47936 0.86619 1.37532 1.39607 1.51086 1.62066 1.93275 2.35711 2.79049 2.87380 2.91465 3.08106 3.53735 3.69845 3.82614 3.91205 4.04279 4.09361 4.15062 4.24038 4.28733 4.34979 4.42720 4.50993 4.51578 4.62785 4.69207 4.72664 4.91144 5.00587 5.02983 5.05181 5.13852 5.17035 5.30656 5.41772 5.50581 5.51397 5.55785 5.60045 5.61351 5.63191 5.72847 5.96744 6.00586 6.08066 6.08524 6.71435 6.84736 7.17124 7.31402 7.69610 8.87051 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.003372 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.454599 B = 8302.691989 C = 9325.845731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.111 4.111 3 C 0.275 3.725 4 H 0.002 0.998 5 C -0.552 4.552 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.269 1.269 13 N -0.702 5.702 14 C 0.549 3.451 15 O -0.597 6.597 16 C -0.323 4.323 17 C 0.068 3.932 18 C -0.239 4.239 19 C 0.184 3.816 20 N -0.480 5.480 21 C 0.128 3.872 22 C -0.126 4.126 23 C -0.094 4.094 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.144 4.144 27 C -0.119 4.119 28 C 0.521 3.479 29 O -0.576 6.576 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.267 0.733 36 H 0.406 0.594 37 H 0.142 0.858 38 H 0.200 0.800 39 H 0.234 0.766 40 H 0.086 0.914 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.155 0.845 44 H 0.140 0.860 45 H 0.119 0.881 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 11.490 28.366 32.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.151 4.151 3 C 0.172 3.828 4 H 0.019 0.981 5 C -0.590 4.590 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.193 1.193 13 N -0.358 5.358 14 C 0.338 3.662 15 O -0.482 6.482 16 C -0.330 4.330 17 C 0.044 3.956 18 C -0.260 4.260 19 C 0.054 3.946 20 N -0.186 5.186 21 C 0.008 3.992 22 C -0.126 4.126 23 C -0.112 4.112 24 C -0.144 4.144 25 C -0.136 4.136 26 C -0.163 4.163 27 C -0.138 4.138 28 C 0.324 3.676 29 O -0.461 6.461 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.249 0.751 37 H 0.160 0.840 38 H 0.217 0.783 39 H 0.251 0.749 40 H 0.105 0.895 41 H 0.177 0.823 42 H 0.186 0.814 43 H 0.172 0.828 44 H 0.157 0.843 45 H 0.137 0.863 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.127 10.971 27.582 31.701 hybrid contribution 1.566 -0.859 -0.854 1.980 sum -9.561 10.112 26.728 30.134 Atomic orbital electron populations 1.21663 0.96308 0.99086 1.00578 1.21679 0.94455 0.99054 0.99869 1.18378 0.93527 0.89190 0.81740 0.98054 1.21503 0.91550 1.43676 1.02242 0.92625 1.25792 1.03660 0.94398 0.94416 1.70113 1.37364 1.43726 1.04003 0.85361 0.78779 0.78760 0.77615 1.19516 1.20209 1.19331 1.46891 1.16134 1.54731 1.18060 1.18174 0.82170 0.79118 0.86714 1.90679 1.51038 1.64089 1.42402 1.20980 1.01452 1.14208 0.96399 1.22288 0.90944 0.84201 0.98201 1.21161 1.04557 1.08182 0.92126 1.23280 0.81644 0.88386 1.01290 1.45589 1.18656 1.39842 1.14475 1.21196 0.94421 0.99829 0.83707 1.20043 0.99702 0.94709 0.98190 1.21466 0.95679 1.00876 0.93216 1.21568 1.00043 0.92582 1.00244 1.21542 0.95714 0.99048 0.97307 1.21364 0.99539 0.98916 0.96434 1.21319 0.99792 0.94222 0.98437 1.17008 0.86797 0.80452 0.83336 1.90624 1.26398 1.47381 1.81708 0.94919 0.94045 0.93353 0.94822 0.92244 0.92405 0.75051 0.84026 0.78313 0.74941 0.89504 0.82310 0.81387 0.82759 0.84258 0.86305 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 8.45 71.98 0.61 -5.49 16 2 C -0.11 -6.31 5.49 30.59 0.17 -6.14 16 3 C 0.28 16.59 2.11 44.24 0.09 16.69 16 4 H 0.00 0.11 7.62 -2.39 -0.02 0.09 16 5 C -0.55 -33.98 8.67 25.60 0.22 -33.75 16 6 H 0.06 3.39 7.72 -2.91 -0.02 3.37 16 7 C 0.02 1.05 5.22 84.65 0.44 1.49 16 8 N -0.91 -56.83 11.97 21.45 0.26 -56.57 16 9 Si 0.97 46.43 29.54 68.60 2.03 48.46 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.70 -37.75 4.93 -449.69 -2.22 -39.97 16 14 C 0.55 27.05 6.45 86.56 0.56 27.61 16 15 O -0.60 -32.08 13.18 -4.17 -0.05 -32.14 16 16 C -0.32 -11.84 5.92 -19.79 -0.12 -11.95 16 17 C 0.07 1.71 9.70 22.83 0.22 1.94 16 18 C -0.24 -2.84 9.99 21.99 0.22 -2.62 16 19 C 0.18 1.59 10.25 83.56 0.86 2.45 16 20 N -0.48 -9.00 2.56 -653.78 -1.67 -10.68 16 21 C 0.13 1.81 5.44 85.63 0.47 2.27 16 22 C -0.13 -2.08 5.46 -19.87 -0.11 -2.19 16 23 C -0.09 -0.91 9.70 22.27 0.22 -0.69 16 24 C -0.13 -1.38 10.05 22.27 0.22 -1.15 16 25 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 26 C -0.14 -3.07 10.05 22.27 0.22 -2.84 16 27 C -0.12 -2.86 9.68 22.27 0.22 -2.64 16 28 C 0.52 17.15 7.43 85.16 0.63 17.78 16 29 O -0.58 -23.56 12.67 -4.94 -0.06 -23.62 16 30 H 0.03 1.75 7.77 -2.38 -0.02 1.73 16 31 H 0.04 2.11 5.55 -2.38 -0.01 2.10 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 3.59 6.64 -2.39 -0.02 3.57 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.41 21.46 5.14 -92.75 -0.48 20.98 16 37 H 0.14 3.67 7.71 -2.91 -0.02 3.65 16 38 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.23 -1.20 8.02 -2.91 -0.02 -1.22 16 40 H 0.09 1.75 7.33 -2.39 -0.02 1.73 16 41 H 0.16 0.40 7.94 -2.39 -0.02 0.38 16 42 H 0.17 0.02 8.06 -2.91 -0.02 0.00 16 43 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.10 3.01 7.48 -2.91 -0.02 2.99 16 Total: -1.00 -91.97 380.07 4.17 -87.81 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.53 Total: 27.56 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.37 Total: -0.85 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -3.63 Total: -107.22 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -0.12 Total: -55.75 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -91.97 4.17 -87.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.435 kcal (2) G-P(sol) polarization free energy of solvation -91.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds