Wall clock time and date at job start Sat Apr 11 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47106 * 2 1 4 4 H 1.08993 * 109.46803 * 304.48148 * 3 2 1 5 5 C 1.52998 * 109.47096 * 184.48089 * 3 2 1 6 6 C 1.52998 * 109.47109 * 174.99729 * 5 3 2 7 7 C 1.50695 * 109.47223 * 180.02562 * 6 5 3 8 8 C 1.38231 * 120.00459 * 269.72565 * 7 6 5 9 9 C 1.38235 * 120.00375 * 179.76004 * 8 7 6 10 10 C 1.38244 * 119.99676 * 0.52008 * 9 8 7 11 11 C 1.38232 * 119.99905 * 359.73396 * 10 9 8 12 12 C 1.38228 * 120.00073 * 0.02562 * 11 10 9 13 13 N 1.46498 * 109.47000 * 64.48177 * 3 2 1 14 14 S 1.65601 * 120.00137 * 255.27103 * 13 3 2 15 15 O 1.42106 * 106.39858 * 49.39344 * 14 13 3 16 16 O 1.42102 * 106.40338 * 182.30899 * 14 13 3 17 17 N 1.65597 * 107.21881 * 295.85244 * 14 13 3 18 18 C 1.46504 * 119.99933 * 82.43927 * 17 14 13 19 19 C 1.46498 * 120.00083 * 262.44047 * 17 14 13 20 20 C 1.50696 * 109.46880 * 114.32756 * 19 17 14 21 21 H 1.07993 * 120.00455 * 7.18112 * 20 19 17 22 22 C 1.37883 * 119.99738 * 187.18745 * 20 19 17 23 23 N 1.31513 * 120.00110 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99933 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46636 * 90.00379 * 24 22 20 26 26 H 1.48501 * 109.47148 * 210.00228 * 24 22 20 27 27 H 1.48498 * 109.47023 * 330.00326 * 24 22 20 28 28 H 1.09004 * 109.47088 * 51.31181 * 1 2 3 29 29 H 1.08997 * 109.47371 * 291.30543 * 1 2 3 30 30 H 1.09000 * 109.46997 * 171.30414 * 1 2 3 31 31 H 1.09004 * 109.46952 * 119.99754 * 2 1 3 32 32 H 1.08995 * 109.47579 * 239.99552 * 2 1 3 33 33 H 1.09001 * 109.47269 * 295.00032 * 5 3 2 34 34 H 1.09005 * 109.46944 * 55.00394 * 5 3 2 35 35 H 1.09001 * 109.47302 * 300.00282 * 6 5 3 36 36 H 1.09001 * 109.46851 * 60.00043 * 6 5 3 37 37 H 1.08000 * 119.99963 * 0.02562 * 8 7 6 38 38 H 1.07995 * 120.00427 * 180.23076 * 9 8 7 39 39 H 1.07999 * 119.99889 * 179.71996 * 10 9 8 40 40 H 1.08001 * 119.99854 * 179.97438 * 11 10 9 41 41 H 1.08003 * 120.00337 * 179.97438 * 12 11 10 42 42 H 0.97000 * 120.00024 * 75.27335 * 13 3 2 43 43 H 1.09009 * 109.47006 * 90.00009 * 18 17 14 44 44 H 1.09002 * 109.47086 * 210.00077 * 18 17 14 45 45 H 1.09002 * 109.47420 * 330.00106 * 18 17 14 46 46 H 1.08998 * 109.46885 * 234.32917 * 19 17 14 47 47 H 1.09001 * 109.46903 * 354.32713 * 19 17 14 48 48 H 0.97007 * 119.99964 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6126 1.9790 -0.8471 5 6 3.5658 1.4440 -0.1127 6 6 4.0665 2.8843 -0.2382 7 6 5.5693 2.8857 -0.3499 8 6 6.3471 2.9652 0.7901 9 6 7.7257 2.9615 0.6880 10 6 8.3265 2.8892 -0.5549 11 6 7.5487 2.8150 -1.6953 12 6 6.1702 2.8137 -1.5928 13 7 1.6417 2.1013 1.2465 14 16 0.4005 3.1975 1.2438 15 8 -0.6797 2.5788 0.5583 16 8 0.2974 3.6902 2.5727 17 7 0.8780 4.4764 0.3065 18 6 0.7435 4.4072 -1.1507 19 6 1.4350 5.6771 0.9345 20 6 2.8808 5.8273 0.5367 21 1 3.3072 5.1706 -0.2071 22 6 3.6592 6.8030 1.1225 23 7 4.9210 6.9338 0.7758 24 14 2.9213 7.9392 2.4087 25 1 3.0959 7.3406 3.7565 26 1 3.6077 9.2552 2.3589 27 1 1.4740 8.1251 2.1332 28 1 -0.3633 0.6424 -0.8022 29 1 -0.3634 0.3734 0.9574 30 1 -0.3633 -1.0159 -0.1554 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.9964 0.9860 0.7778 34 1 3.8655 0.8771 -0.9941 35 1 3.6360 3.3424 -1.1287 36 1 3.7667 3.4513 0.6431 37 1 5.8777 3.0259 1.7609 38 1 8.3333 3.0199 1.5789 39 1 9.4035 2.8909 -0.6350 40 1 8.0181 2.7589 -2.6663 41 1 5.5625 2.7561 -2.4838 42 1 2.1051 1.8954 2.0734 43 1 -0.2333 4.7921 -1.4441 44 1 1.5253 5.0070 -1.6166 45 1 0.8382 3.3711 -1.4755 46 1 0.8748 6.5523 0.6055 47 1 1.3639 5.5865 2.0184 48 1 5.4685 7.6205 1.1877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599395528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:51 Heat of formation + Delta-G solvation = -64.358010 kcal Electronic energy + Delta-G solvation = -29690.687443 eV Core-core repulsion = 25871.854188 eV Total energy + Delta-G solvation = -3818.833255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.93852 -37.54685 -36.59838 -35.65013 -35.33374 -33.11675 -32.39912 -31.42240 -30.43684 -29.28775 -28.35093 -25.67399 -25.32478 -22.42614 -22.12530 -21.82046 -20.93315 -20.31997 -19.06598 -17.49526 -16.89125 -16.66455 -16.29897 -16.08024 -15.14868 -14.86244 -14.72160 -14.40386 -14.15871 -13.81161 -13.71010 -13.36497 -13.20914 -12.94432 -12.78048 -12.56132 -12.41236 -12.35898 -12.14135 -11.86992 -11.83558 -11.65600 -11.42819 -11.27719 -11.19835 -11.12696 -10.84144 -10.80288 -10.76176 -10.57278 -10.47255 -10.32270 -10.23843 -10.15248 -9.42890 -9.18305 -8.61985 -8.45538 -8.15858 -8.09053 -6.12002 -4.12672 1.18717 1.84033 1.87189 3.26593 3.33946 3.39692 3.42587 4.07424 4.24162 4.37371 4.72252 4.88033 5.05255 5.13144 5.20063 5.27249 5.32289 5.36035 5.44993 5.49161 5.55804 5.66133 5.72258 5.79650 5.94697 5.98632 6.02113 6.05162 6.07643 6.11406 6.15050 6.19716 6.29957 6.45056 6.48715 6.50682 6.61327 6.62505 6.87157 6.88876 6.93443 6.94199 7.04243 7.21665 7.21794 7.44801 7.49123 7.59515 8.43417 8.91832 9.48060 10.97734 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008293 B = 0.006348 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3375.579989 B = 4409.469839 C = 6952.886157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.157 3.843 4 H 0.085 0.915 5 C -0.119 4.119 6 C -0.087 4.087 7 C -0.053 4.053 8 C -0.100 4.100 9 C -0.120 4.120 10 C -0.135 4.135 11 C -0.124 4.124 12 C -0.120 4.120 13 N -1.119 6.119 14 S 2.782 3.218 15 O -0.989 6.989 16 O -0.987 6.987 17 N -0.989 5.989 18 C 0.102 3.898 19 C 0.214 3.786 20 C -0.545 4.545 21 H 0.096 0.904 22 C 0.080 3.920 23 N -0.883 5.883 24 Si 0.860 3.140 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.265 1.265 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.412 0.588 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.051 0.949 46 H 0.027 0.973 47 H 0.045 0.955 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 -12.189 -4.059 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.049 3.951 4 H 0.103 0.897 5 C -0.158 4.158 6 C -0.124 4.124 7 C -0.053 4.053 8 C -0.118 4.118 9 C -0.138 4.138 10 C -0.153 4.153 11 C -0.142 4.142 12 C -0.138 4.138 13 N -0.877 5.877 14 S 2.789 3.211 15 O -0.972 6.972 16 O -0.972 6.972 17 N -0.831 5.831 18 C -0.044 4.044 19 C 0.091 3.909 20 C -0.583 4.583 21 H 0.114 0.886 22 C -0.124 4.124 23 N -0.520 5.520 24 Si 0.687 3.313 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.190 1.190 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.246 0.754 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.566 -12.107 -3.759 12.690 hybrid contribution 0.557 0.900 0.871 1.370 sum -0.009 -11.208 -2.888 11.574 Atomic orbital electron populations 1.21833 0.94714 1.00639 1.03492 1.21976 0.97008 0.96361 1.02135 1.20894 0.95249 0.93170 0.85769 0.89715 1.21937 0.93844 0.97739 1.02278 1.20887 0.90430 0.95690 1.05422 1.19851 0.95989 0.96693 0.92768 1.21004 0.93437 0.98918 0.98460 1.21042 0.94977 1.00558 0.97202 1.20967 0.99106 1.02277 0.92916 1.20985 0.94032 1.01295 0.97922 1.20977 0.94521 1.01205 0.97070 1.56048 1.56041 1.59643 1.15991 1.01852 0.73758 0.72470 0.72992 1.93586 1.51676 1.76162 1.75783 1.93576 1.86536 1.79940 1.37106 1.57386 1.79059 1.30974 1.15635 1.21363 1.01824 1.00776 0.80438 1.19578 0.95312 0.82304 0.93731 1.21538 0.92931 1.18533 1.25327 0.88595 1.24820 0.94606 0.96773 0.96182 1.69901 1.06042 1.33494 1.42559 0.87099 0.80140 0.80961 0.83074 1.19942 1.21218 1.18979 0.91636 0.92429 0.93665 0.91727 0.91323 0.91529 0.91346 0.91049 0.87650 0.86441 0.86880 0.87048 0.86951 0.86754 0.75440 0.93607 0.89930 0.93012 0.95542 0.93737 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.33 37.15 0.31 -1.56 16 2 C -0.14 -1.49 5.61 -26.73 -0.15 -1.64 16 3 C 0.16 1.96 2.30 -67.93 -0.16 1.80 16 4 H 0.09 1.07 5.26 -51.93 -0.27 0.80 16 5 C -0.12 -1.47 4.85 -26.73 -0.13 -1.60 16 6 C -0.09 -1.39 4.02 -27.89 -0.11 -1.50 16 7 C -0.05 -0.89 5.13 -104.62 -0.54 -1.42 16 8 C -0.10 -1.70 9.70 -39.58 -0.38 -2.09 16 9 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 10 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 11 C -0.12 -1.80 10.05 -39.59 -0.40 -2.20 16 12 C -0.12 -1.85 9.70 -39.58 -0.38 -2.24 16 13 N -1.12 -16.07 4.53 -4.89 -0.02 -16.10 16 14 S 2.78 49.79 5.92 -107.50 -0.64 49.15 16 15 O -0.99 -17.99 13.75 -57.17 -0.79 -18.77 16 16 O -0.99 -21.10 16.49 -57.17 -0.94 -22.05 16 17 N -0.99 -18.53 3.33 -123.05 -0.41 -18.94 16 18 C 0.10 1.62 10.04 59.85 0.60 2.22 16 19 C 0.21 4.79 4.70 -5.20 -0.02 4.77 16 20 C -0.54 -13.38 8.32 -34.44 -0.29 -13.66 16 21 H 0.10 2.37 5.10 -52.49 -0.27 2.10 16 22 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 23 N -0.88 -24.57 13.96 55.43 0.77 -23.80 16 24 Si 0.86 20.52 27.34 -169.99 -4.65 15.88 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.27 -6.16 6.75 56.52 0.38 -5.78 16 28 H 0.06 0.88 7.41 -51.93 -0.38 0.49 16 29 H 0.06 0.81 6.76 -51.93 -0.35 0.46 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.17 7.52 -51.93 -0.39 0.78 16 36 H 0.11 1.98 6.10 -51.93 -0.32 1.66 16 37 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.41 5.37 8.93 -34.47 -0.31 5.06 16 43 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.08 1.36 7.32 -51.93 -0.38 0.98 16 45 H 0.05 0.69 5.48 -51.93 -0.28 0.41 16 46 H 0.03 0.60 7.69 -51.93 -0.40 0.20 16 47 H 0.04 1.06 5.70 -51.93 -0.30 0.76 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -30.52 385.35 -10.87 -41.39 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.46 Total: 9.14 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -2.54 Total: -21.71 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.34 Total: -58.84 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -1.73 Total: -40.82 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.65 Total: 15.88 kcal Atomic # 16 Polarization: 49.79 SS G_CDS: -0.64 Total: 49.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.52 -10.87 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599395528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.969 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds