Wall clock time and date at job start Sat Apr 11 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47106 * 2 1 4 4 H 1.08993 * 109.46803 * 304.48148 * 3 2 1 5 5 C 1.52998 * 109.47096 * 184.48089 * 3 2 1 6 6 C 1.52998 * 109.47109 * 174.99729 * 5 3 2 7 7 C 1.50695 * 109.47223 * 180.02562 * 6 5 3 8 8 C 1.38231 * 120.00459 * 269.72565 * 7 6 5 9 9 C 1.38235 * 120.00375 * 179.76004 * 8 7 6 10 10 C 1.38244 * 119.99676 * 0.52008 * 9 8 7 11 11 C 1.38232 * 119.99905 * 359.73396 * 10 9 8 12 12 C 1.38228 * 120.00073 * 0.02562 * 11 10 9 13 13 N 1.46498 * 109.47000 * 64.48177 * 3 2 1 14 14 S 1.65601 * 120.00137 * 255.27103 * 13 3 2 15 15 O 1.42106 * 106.39858 * 49.39344 * 14 13 3 16 16 O 1.42102 * 106.40338 * 182.30899 * 14 13 3 17 17 N 1.65597 * 107.21881 * 295.85244 * 14 13 3 18 18 C 1.46504 * 119.99933 * 82.43927 * 17 14 13 19 19 C 1.46498 * 120.00083 * 262.44047 * 17 14 13 20 20 C 1.50696 * 109.46880 * 114.32756 * 19 17 14 21 21 H 1.07993 * 120.00455 * 7.18112 * 20 19 17 22 22 C 1.37883 * 119.99738 * 187.18745 * 20 19 17 23 23 N 1.31513 * 120.00110 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99933 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46636 * 90.00379 * 24 22 20 26 26 H 1.48501 * 109.47148 * 210.00228 * 24 22 20 27 27 H 1.48498 * 109.47023 * 330.00326 * 24 22 20 28 28 H 1.09004 * 109.47088 * 51.31181 * 1 2 3 29 29 H 1.08997 * 109.47371 * 291.30543 * 1 2 3 30 30 H 1.09000 * 109.46997 * 171.30414 * 1 2 3 31 31 H 1.09004 * 109.46952 * 119.99754 * 2 1 3 32 32 H 1.08995 * 109.47579 * 239.99552 * 2 1 3 33 33 H 1.09001 * 109.47269 * 295.00032 * 5 3 2 34 34 H 1.09005 * 109.46944 * 55.00394 * 5 3 2 35 35 H 1.09001 * 109.47302 * 300.00282 * 6 5 3 36 36 H 1.09001 * 109.46851 * 60.00043 * 6 5 3 37 37 H 1.08000 * 119.99963 * 0.02562 * 8 7 6 38 38 H 1.07995 * 120.00427 * 180.23076 * 9 8 7 39 39 H 1.07999 * 119.99889 * 179.71996 * 10 9 8 40 40 H 1.08001 * 119.99854 * 179.97438 * 11 10 9 41 41 H 1.08003 * 120.00337 * 179.97438 * 12 11 10 42 42 H 0.97000 * 120.00024 * 75.27335 * 13 3 2 43 43 H 1.09009 * 109.47006 * 90.00009 * 18 17 14 44 44 H 1.09002 * 109.47086 * 210.00077 * 18 17 14 45 45 H 1.09002 * 109.47420 * 330.00106 * 18 17 14 46 46 H 1.08998 * 109.46885 * 234.32917 * 19 17 14 47 47 H 1.09001 * 109.46903 * 354.32713 * 19 17 14 48 48 H 0.97007 * 119.99964 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6126 1.9790 -0.8471 5 6 3.5658 1.4440 -0.1127 6 6 4.0665 2.8843 -0.2382 7 6 5.5693 2.8857 -0.3499 8 6 6.3471 2.9652 0.7901 9 6 7.7257 2.9615 0.6880 10 6 8.3265 2.8892 -0.5549 11 6 7.5487 2.8150 -1.6953 12 6 6.1702 2.8137 -1.5928 13 7 1.6417 2.1013 1.2465 14 16 0.4005 3.1975 1.2438 15 8 -0.6797 2.5788 0.5583 16 8 0.2974 3.6902 2.5727 17 7 0.8780 4.4764 0.3065 18 6 0.7435 4.4072 -1.1507 19 6 1.4350 5.6771 0.9345 20 6 2.8808 5.8273 0.5367 21 1 3.3072 5.1706 -0.2071 22 6 3.6592 6.8030 1.1225 23 7 4.9210 6.9338 0.7758 24 14 2.9213 7.9392 2.4087 25 1 3.0959 7.3406 3.7565 26 1 3.6077 9.2552 2.3589 27 1 1.4740 8.1251 2.1332 28 1 -0.3633 0.6424 -0.8022 29 1 -0.3634 0.3734 0.9574 30 1 -0.3633 -1.0159 -0.1554 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.9964 0.9860 0.7778 34 1 3.8655 0.8771 -0.9941 35 1 3.6360 3.3424 -1.1287 36 1 3.7667 3.4513 0.6431 37 1 5.8777 3.0259 1.7609 38 1 8.3333 3.0199 1.5789 39 1 9.4035 2.8909 -0.6350 40 1 8.0181 2.7589 -2.6663 41 1 5.5625 2.7561 -2.4838 42 1 2.1051 1.8954 2.0734 43 1 -0.2333 4.7921 -1.4441 44 1 1.5253 5.0070 -1.6166 45 1 0.8382 3.3711 -1.4755 46 1 0.8748 6.5523 0.6055 47 1 1.3639 5.5865 2.0184 48 1 5.4685 7.6205 1.1877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599395528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:50 Heat of formation + Delta-G solvation = -83.154346 kcal Electronic energy + Delta-G solvation = -29691.502513 eV Core-core repulsion = 25871.854188 eV Total energy + Delta-G solvation = -3819.648325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.10414 -38.72977 -38.04506 -37.22478 -36.85627 -34.40436 -34.21280 -32.50042 -31.61017 -30.41392 -30.11267 -26.94845 -26.71302 -23.65334 -23.42643 -23.30418 -21.96961 -21.51004 -20.46120 -19.12959 -18.49582 -18.20399 -17.54807 -17.36835 -16.56432 -16.20602 -15.99908 -15.86233 -15.31536 -15.24881 -14.97326 -14.71739 -14.39708 -14.31601 -14.10632 -13.98313 -13.87993 -13.62542 -13.48165 -13.30381 -13.22000 -13.12124 -12.94406 -12.87191 -12.55904 -12.41361 -12.28775 -12.05418 -12.01464 -11.95429 -11.82920 -11.60943 -11.55597 -11.41663 -11.21520 -10.66338 -10.34218 -9.67584 -9.65003 -9.33988 -8.15834 -6.16595 -0.24861 0.65550 0.67297 1.34618 1.40720 1.46407 2.02343 2.39621 2.65848 3.05340 3.17277 3.48917 3.66026 3.94052 4.07405 4.13925 4.17919 4.25645 4.33993 4.40002 4.49699 4.51336 4.67558 4.72795 4.76280 4.78674 4.79699 4.90330 4.95753 5.02761 5.05949 5.10559 5.14651 5.22017 5.23384 5.31701 5.35670 5.39194 5.53170 5.56723 5.63721 5.65684 5.73153 5.75163 5.80878 5.98425 6.23482 6.31882 6.43659 6.92542 7.45524 8.95353 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008293 B = 0.006348 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3375.579989 B = 4409.469839 C = 6952.886157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.152 3.848 4 H 0.085 0.915 5 C -0.107 4.107 6 C -0.079 4.079 7 C -0.071 4.071 8 C -0.128 4.128 9 C -0.131 4.131 10 C -0.139 4.139 11 C -0.126 4.126 12 C -0.132 4.132 13 N -1.111 6.111 14 S 2.795 3.205 15 O -0.990 6.990 16 O -1.024 7.024 17 N -0.994 5.994 18 C 0.096 3.904 19 C 0.220 3.780 20 C -0.527 4.527 21 H 0.091 0.909 22 C 0.035 3.965 23 N -0.919 5.919 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.255 1.255 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.419 0.581 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.027 0.973 47 H 0.032 0.968 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 -13.864 -5.387 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.046 3.954 4 H 0.103 0.897 5 C -0.146 4.146 6 C -0.116 4.116 7 C -0.071 4.071 8 C -0.146 4.146 9 C -0.149 4.149 10 C -0.157 4.157 11 C -0.144 4.144 12 C -0.150 4.150 13 N -0.872 5.872 14 S 2.802 3.198 15 O -0.973 6.973 16 O -1.008 7.008 17 N -0.835 5.835 18 C -0.049 4.049 19 C 0.095 3.905 20 C -0.566 4.566 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.558 5.558 24 Si 0.726 3.274 25 H -0.204 1.204 26 H -0.211 1.211 27 H -0.179 1.179 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.254 0.746 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.475 -13.788 -5.095 14.707 hybrid contribution 0.531 1.333 1.217 1.881 sum 0.055 -12.455 -3.878 13.045 Atomic orbital electron populations 1.21840 0.95817 1.01415 1.01874 1.21947 0.95862 0.95079 1.03905 1.21114 0.95381 0.94252 0.84660 0.89701 1.21851 0.93447 0.95661 1.03591 1.20718 0.90317 0.97408 1.03196 1.20035 0.96353 0.97397 0.93340 1.21101 0.94506 1.00741 0.98275 1.21312 0.94600 1.00363 0.98601 1.21342 1.00681 1.01303 0.92403 1.21384 0.93757 0.99950 0.99302 1.21244 0.95464 1.01259 0.97058 1.55800 1.55457 1.58742 1.17248 1.01326 0.74103 0.72378 0.71944 1.93587 1.52193 1.75918 1.75591 1.93522 1.87302 1.80813 1.39203 1.57329 1.78896 1.30316 1.16957 1.21555 1.02251 1.02455 0.78664 1.19304 0.94096 0.83893 0.93224 1.21781 0.93804 1.17115 1.23941 0.89144 1.25366 0.94925 0.98334 0.97898 1.70003 1.07116 1.34518 1.44191 0.86455 0.80126 0.79664 0.81191 1.20442 1.21149 1.17902 0.92724 0.94464 0.91841 0.90708 0.88778 0.91008 0.89038 0.91979 0.91038 0.87695 0.85461 0.84298 0.84102 0.85181 0.74614 0.92271 0.90816 0.90469 0.95493 0.95001 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.33 71.98 0.60 -2.85 16 2 C -0.13 -2.43 5.61 30.60 0.17 -2.26 16 3 C 0.15 3.51 2.30 44.99 0.10 3.62 16 4 H 0.09 1.96 5.26 -2.39 -0.01 1.95 16 5 C -0.11 -2.45 4.85 30.59 0.15 -2.30 16 6 C -0.08 -2.50 4.02 29.85 0.12 -2.38 16 7 C -0.07 -2.37 5.13 -19.87 -0.10 -2.48 16 8 C -0.13 -4.44 9.70 22.27 0.22 -4.23 16 9 C -0.13 -4.01 10.05 22.27 0.22 -3.78 16 10 C -0.14 -3.80 10.05 22.27 0.22 -3.57 16 11 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 12 C -0.13 -3.93 9.70 22.27 0.22 -3.71 16 13 N -1.11 -31.04 4.53 -169.39 -0.77 -31.80 16 14 S 2.79 98.75 5.92 -56.49 -0.33 98.41 16 15 O -0.99 -34.90 13.75 -128.00 -1.76 -36.66 16 16 O -1.02 -44.06 16.49 -128.00 -2.11 -46.17 16 17 N -0.99 -36.83 3.33 -543.21 -1.81 -38.64 16 18 C 0.10 2.92 10.04 127.77 1.28 4.21 16 19 C 0.22 9.85 4.70 85.63 0.40 10.25 16 20 C -0.53 -26.23 8.32 25.60 0.21 -26.01 16 21 H 0.09 4.55 5.10 -2.91 -0.01 4.54 16 22 C 0.03 1.86 5.47 84.66 0.46 2.33 16 23 N -0.92 -52.25 13.96 21.45 0.30 -51.95 16 24 Si 0.90 42.53 27.34 68.60 1.88 44.41 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.26 -11.52 6.75 99.48 0.67 -10.85 16 28 H 0.05 1.35 7.41 -2.38 -0.02 1.33 16 29 H 0.04 0.98 6.76 -2.39 -0.02 0.97 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.06 2.02 7.52 -2.39 -0.02 2.01 16 36 H 0.07 2.75 6.10 -2.39 -0.01 2.73 16 37 H 0.10 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.42 10.74 8.93 -96.75 -0.86 9.88 16 43 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.07 2.38 7.32 -2.39 -0.02 2.36 16 45 H 0.08 1.93 5.48 -2.39 -0.01 1.92 16 46 H 0.03 1.21 7.69 -2.39 -0.02 1.19 16 47 H 0.03 1.53 5.70 -2.39 -0.01 1.51 16 48 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -66.02 385.35 -0.04 -66.06 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.06 Total: 32.69 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 4.51 Total: -36.34 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -2.28 Total: -122.40 kcal Atomic # 8 Polarization: -78.96 SS G_CDS: -3.87 Total: -82.84 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.41 kcal Atomic # 16 Polarization: 98.75 SS G_CDS: -0.33 Total: 98.41 kcal Total: -66.02 -0.04 -66.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599395528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.097 kcal (2) G-P(sol) polarization free energy of solvation -66.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds