Wall clock time and date at job start Sat Apr 11 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 N 1.46895 * 109.47008 * 180.02562 * 3 2 1 5 5 C 1.46896 * 111.00414 * 66.04453 * 4 3 2 6 6 C 1.52998 * 109.47499 * 198.13187 * 5 4 3 7 7 C 1.46905 * 110.99940 * 190.00151 * 4 3 2 8 8 C 1.52996 * 109.47061 * 73.60363 * 7 4 3 9 9 N 1.46505 * 109.46922 * 183.12211 * 8 7 4 10 10 S 1.65605 * 119.99777 * 165.72155 * 9 8 7 11 11 O 1.42099 * 106.39980 * 176.71784 * 10 9 8 12 12 O 1.42101 * 106.40229 * 309.63291 * 10 9 8 13 13 C 1.76198 * 107.21873 * 63.17287 * 10 9 8 14 14 C 1.37630 * 120.13023 * 244.17280 * 13 10 9 15 15 C 1.38619 * 120.25194 * 179.97438 * 14 13 10 16 16 C 1.38658 * 120.49646 * 0.02562 * 15 14 13 17 17 C 1.37594 * 120.24976 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12410 * 63.89855 * 13 10 9 19 19 C 1.41401 * 120.24766 * 359.97438 * 18 13 10 20 20 H 1.08001 * 119.99340 * 328.39651 * 19 18 13 21 21 C 1.39939 * 120.00253 * 148.39317 * 19 18 13 22 22 N 1.30823 * 120.00293 * 344.64593 * 21 19 18 23 23 Si 1.86807 * 119.99918 * 164.63623 * 21 19 18 24 24 H 1.48499 * 109.46845 * 5.01095 * 23 21 19 25 25 H 1.48498 * 109.46930 * 125.00972 * 23 21 19 26 26 H 1.48492 * 109.47116 * 245.01237 * 23 21 19 27 27 H 1.08993 * 109.47132 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47078 * 300.00074 * 1 2 3 29 29 H 1.09002 * 109.46700 * 60.00069 * 1 2 3 30 30 H 1.08997 * 109.47078 * 239.99926 * 2 1 3 31 31 H 1.08997 * 109.47028 * 120.00289 * 2 1 3 32 32 H 1.08997 * 109.47143 * 59.99966 * 3 2 1 33 33 H 1.08993 * 109.46882 * 300.00096 * 3 2 1 34 34 H 1.08997 * 109.47089 * 318.13793 * 5 4 3 35 35 H 1.09003 * 109.46691 * 78.13365 * 5 4 3 36 36 H 1.09005 * 109.47228 * 183.41830 * 6 5 4 37 37 H 1.08999 * 109.47033 * 303.41620 * 6 5 4 38 38 H 1.09005 * 109.46726 * 63.41812 * 6 5 4 39 39 H 1.09004 * 109.46878 * 313.60318 * 7 4 3 40 40 H 1.08999 * 109.47011 * 193.60593 * 7 4 3 41 41 H 1.08997 * 109.47534 * 63.12626 * 8 7 4 42 42 H 1.09002 * 109.47441 * 303.12044 * 8 7 4 43 43 H 0.96994 * 119.99801 * 345.72806 * 9 8 7 44 44 H 1.08003 * 119.87700 * 0.02562 * 14 13 10 45 45 H 1.07995 * 119.75069 * 180.02562 * 15 14 13 46 46 H 1.08000 * 119.87404 * 180.02562 * 16 15 14 47 47 H 1.08001 * 120.12874 * 179.97438 * 17 16 15 48 48 H 0.96997 * 120.00167 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0350 0.8858 -1.2542 6 6 5.4976 0.4816 -1.0587 7 6 4.0356 2.7930 0.2376 8 6 3.8389 3.1651 1.7085 9 7 4.2958 4.5393 1.9299 10 16 3.8867 5.3333 3.3244 11 8 4.5364 6.5960 3.2726 12 8 2.4807 5.1882 3.4711 13 6 4.6200 4.4508 4.6615 14 6 3.8253 3.8421 5.6060 15 6 4.3996 3.1467 6.6587 16 6 5.7785 3.0562 6.7733 17 6 6.5924 3.6578 5.8413 18 6 6.0203 4.3607 4.7646 19 6 6.8468 4.9767 3.7966 20 1 6.5094 5.0624 2.7743 21 6 8.1019 5.4752 4.1634 22 7 8.3930 5.6492 5.4269 23 14 9.3619 5.8921 2.8487 24 1 8.7507 5.7226 1.5059 25 1 9.8054 7.2993 3.0166 26 1 10.5310 4.9858 2.9784 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.4506 0.0101 -1.5362 35 1 3.9676 1.6366 -2.0415 36 1 5.9056 0.1252 -2.0046 37 1 6.0705 1.3441 -0.7180 38 1 5.5588 -0.3123 -0.3143 39 1 3.5039 3.5066 -0.3920 40 1 5.0982 2.8165 -0.0042 41 1 4.4154 2.4851 2.3356 42 1 2.7822 3.0878 1.9647 43 1 4.8379 4.9841 1.2597 44 1 2.7501 3.9058 5.5264 45 1 3.7683 2.6717 7.3951 46 1 6.2152 2.5115 7.5973 47 1 7.6662 3.5865 5.9327 48 1 9.2631 5.9944 5.6811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601363345.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:59 Heat of formation + Delta-G solvation = -67.662619 kcal Electronic energy + Delta-G solvation = -28510.132924 eV Core-core repulsion = 24691.156371 eV Total energy + Delta-G solvation = -3818.976553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.53894 -37.57433 -36.19690 -34.95009 -34.80729 -33.84382 -33.48084 -30.72231 -30.19661 -29.57767 -27.91287 -25.52383 -25.14649 -22.76598 -21.85031 -21.62798 -21.12981 -20.38415 -18.58230 -17.67645 -16.81754 -16.36217 -15.87970 -15.80896 -15.44779 -15.16033 -14.88886 -14.39211 -14.29642 -14.05341 -13.63022 -13.34829 -13.28162 -13.13170 -12.96076 -12.73161 -12.10880 -12.01032 -11.88435 -11.83305 -11.75407 -11.54463 -11.41443 -11.28454 -11.21657 -11.15172 -11.09356 -10.99613 -10.88182 -10.74672 -10.67415 -10.50002 -10.40089 -9.85647 -9.43728 -9.39025 -8.73872 -8.39578 -8.01754 -7.58177 -7.03397 -4.73328 1.55229 2.35316 2.72963 2.97780 3.03006 3.10420 3.64017 3.78613 4.12854 4.42382 4.71607 4.76371 4.87809 4.91537 5.06544 5.19327 5.23202 5.30003 5.31620 5.40111 5.46481 5.52916 5.57816 5.67950 5.71213 5.77327 5.85881 5.94246 5.95052 6.05969 6.07055 6.15595 6.19077 6.24166 6.26468 6.37527 6.44570 6.80304 6.93154 7.01912 7.04044 7.09170 7.32488 7.49223 7.55463 7.67206 7.80753 7.90811 8.28889 8.52481 8.65336 9.93002 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.004070 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.855150 B = 6878.595169 C = 7886.673074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.048 3.952 4 N -0.536 5.536 5 C 0.048 3.952 6 C -0.149 4.149 7 C 0.048 3.952 8 C 0.129 3.871 9 N -1.123 6.123 10 S 2.703 3.297 11 O -0.964 6.964 12 O -0.999 6.999 13 C -0.772 4.772 14 C -0.002 4.002 15 C -0.249 4.249 16 C -0.075 4.075 17 C -0.157 4.157 18 C 0.192 3.808 19 C -0.454 4.454 20 H 0.088 0.912 21 C 0.083 3.917 22 N -0.775 5.775 23 Si 0.913 3.087 24 H -0.256 1.256 25 H -0.270 1.270 26 H -0.269 1.269 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.410 0.590 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.116 0.884 48 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 -9.154 -11.339 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.080 4.080 4 N -0.261 5.261 5 C -0.079 4.079 6 C -0.207 4.207 7 C -0.081 4.081 8 C 0.002 3.998 9 N -0.880 5.880 10 S 2.800 3.200 11 O -0.954 6.954 12 O -0.989 6.989 13 C -0.867 4.867 14 C -0.022 4.022 15 C -0.269 4.269 16 C -0.094 4.094 17 C -0.177 4.177 18 C 0.187 3.813 19 C -0.482 4.482 20 H 0.106 0.894 21 C -0.138 4.138 22 N -0.398 5.398 23 Si 0.737 3.263 24 H -0.179 1.179 25 H -0.195 1.195 26 H -0.194 1.194 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.243 0.757 44 H 0.126 0.874 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.134 0.866 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.496 -8.675 -10.652 14.796 hybrid contribution 1.081 0.371 -0.926 1.471 sum -4.415 -8.303 -11.577 14.916 Atomic orbital electron populations 1.21746 0.95720 1.01619 1.01928 1.21560 0.95306 0.96419 1.02602 1.22280 0.87081 0.97305 1.01314 1.61873 1.07536 1.21921 1.34786 1.22133 0.96750 0.99124 0.89924 1.21800 0.95214 1.02247 1.01431 1.22308 1.01011 0.88592 0.96213 1.21029 0.99910 0.82457 0.96358 1.55640 1.69753 1.24849 1.37777 1.01008 0.72602 0.73480 0.72906 1.93544 1.76342 1.39316 1.86237 1.93442 1.31476 1.87344 1.86687 1.29886 1.03831 1.30985 1.22001 1.20264 0.97382 0.92101 0.92465 1.20485 0.94618 1.09948 1.01843 1.20882 0.93842 0.97522 0.97123 1.21348 0.99078 1.00224 0.97037 1.16976 0.88524 0.85131 0.90646 1.19835 1.00075 1.31348 0.96964 0.89362 1.25907 0.98732 0.92842 0.96335 1.69800 1.22370 1.29922 1.17667 0.86166 0.79699 0.78952 0.81524 1.17886 1.19494 1.19395 0.92667 0.92356 0.93034 0.92184 0.90902 0.89988 0.94982 0.90592 0.95021 0.92681 0.92299 0.91805 0.94133 0.89820 0.90754 0.91050 0.75737 0.87421 0.88690 0.88801 0.86563 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.12 5.90 -26.73 -0.16 -1.28 16 3 C 0.05 0.51 4.80 -3.83 -0.02 0.50 16 4 N -0.54 -6.20 4.39 -234.64 -1.03 -7.23 16 5 C 0.05 0.47 5.56 -3.83 -0.02 0.45 16 6 C -0.15 -1.43 10.05 37.16 0.37 -1.06 16 7 C 0.05 0.60 4.95 -3.82 -0.02 0.58 16 8 C 0.13 2.00 6.32 -4.04 -0.03 1.97 16 9 N -1.12 -19.55 5.01 -10.61 -0.05 -19.61 16 10 S 2.70 59.40 4.96 -107.50 -0.53 58.87 16 11 O -0.96 -24.13 16.73 -57.17 -0.96 -25.09 16 12 O -1.00 -22.81 16.51 -57.17 -0.94 -23.75 16 13 C -0.77 -18.51 5.90 -38.88 -0.23 -18.74 16 14 C 0.00 -0.05 9.53 -39.66 -0.38 -0.43 16 15 C -0.25 -5.44 10.05 -39.29 -0.39 -5.84 16 16 C -0.07 -1.68 10.02 -39.66 -0.40 -2.07 16 17 C -0.16 -3.87 8.65 -38.87 -0.34 -4.21 16 18 C 0.19 4.87 5.49 -106.82 -0.59 4.28 16 19 C -0.45 -11.32 7.55 -37.74 -0.29 -11.60 16 20 H 0.09 2.04 5.89 -52.49 -0.31 1.73 16 21 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 22 N -0.77 -19.21 11.29 55.55 0.63 -18.59 16 23 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 16 24 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.51 6.26 -51.93 -0.33 0.18 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.96 6.46 -51.93 -0.34 0.63 16 33 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.08 0.66 5.90 -51.93 -0.31 0.36 16 35 H 0.03 0.30 8.02 -51.93 -0.42 -0.12 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.62 6.58 -51.93 -0.34 0.27 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.48 8.03 -51.93 -0.42 0.07 16 40 H 0.08 1.01 6.37 -51.93 -0.33 0.68 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.11 6.25 -51.93 -0.32 0.78 16 43 H 0.41 6.31 8.42 -34.48 -0.29 6.02 16 44 H 0.11 2.27 7.33 -52.48 -0.38 1.89 16 45 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 46 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 47 H 0.12 2.88 6.60 -52.49 -0.35 2.53 16 48 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -30.17 391.27 -11.71 -41.88 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -7.49 Total: 11.16 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: -2.20 Total: -36.40 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.46 Total: -45.42 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -1.90 Total: -48.84 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 59.40 SS G_CDS: -0.53 Total: 58.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.17 -11.71 -41.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601363345.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.783 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds