Wall clock time and date at job start Sat Apr 11 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 N 1.46895 * 109.47008 * 180.02562 * 3 2 1 5 5 C 1.46896 * 111.00414 * 66.04453 * 4 3 2 6 6 C 1.52998 * 109.47499 * 198.13187 * 5 4 3 7 7 C 1.46905 * 110.99940 * 190.00151 * 4 3 2 8 8 C 1.52996 * 109.47061 * 73.60363 * 7 4 3 9 9 N 1.46505 * 109.46922 * 183.12211 * 8 7 4 10 10 S 1.65605 * 119.99777 * 165.72155 * 9 8 7 11 11 O 1.42099 * 106.39980 * 176.71784 * 10 9 8 12 12 O 1.42101 * 106.40229 * 309.63291 * 10 9 8 13 13 C 1.76198 * 107.21873 * 63.17287 * 10 9 8 14 14 C 1.37630 * 120.13023 * 244.17280 * 13 10 9 15 15 C 1.38619 * 120.25194 * 179.97438 * 14 13 10 16 16 C 1.38658 * 120.49646 * 0.02562 * 15 14 13 17 17 C 1.37594 * 120.24976 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12410 * 63.89855 * 13 10 9 19 19 C 1.41401 * 120.24766 * 359.97438 * 18 13 10 20 20 H 1.08001 * 119.99340 * 328.39651 * 19 18 13 21 21 C 1.39939 * 120.00253 * 148.39317 * 19 18 13 22 22 N 1.30823 * 120.00293 * 344.64593 * 21 19 18 23 23 Si 1.86807 * 119.99918 * 164.63623 * 21 19 18 24 24 H 1.48499 * 109.46845 * 5.01095 * 23 21 19 25 25 H 1.48498 * 109.46930 * 125.00972 * 23 21 19 26 26 H 1.48492 * 109.47116 * 245.01237 * 23 21 19 27 27 H 1.08993 * 109.47132 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47078 * 300.00074 * 1 2 3 29 29 H 1.09002 * 109.46700 * 60.00069 * 1 2 3 30 30 H 1.08997 * 109.47078 * 239.99926 * 2 1 3 31 31 H 1.08997 * 109.47028 * 120.00289 * 2 1 3 32 32 H 1.08997 * 109.47143 * 59.99966 * 3 2 1 33 33 H 1.08993 * 109.46882 * 300.00096 * 3 2 1 34 34 H 1.08997 * 109.47089 * 318.13793 * 5 4 3 35 35 H 1.09003 * 109.46691 * 78.13365 * 5 4 3 36 36 H 1.09005 * 109.47228 * 183.41830 * 6 5 4 37 37 H 1.08999 * 109.47033 * 303.41620 * 6 5 4 38 38 H 1.09005 * 109.46726 * 63.41812 * 6 5 4 39 39 H 1.09004 * 109.46878 * 313.60318 * 7 4 3 40 40 H 1.08999 * 109.47011 * 193.60593 * 7 4 3 41 41 H 1.08997 * 109.47534 * 63.12626 * 8 7 4 42 42 H 1.09002 * 109.47441 * 303.12044 * 8 7 4 43 43 H 0.96994 * 119.99801 * 345.72806 * 9 8 7 44 44 H 1.08003 * 119.87700 * 0.02562 * 14 13 10 45 45 H 1.07995 * 119.75069 * 180.02562 * 15 14 13 46 46 H 1.08000 * 119.87404 * 180.02562 * 16 15 14 47 47 H 1.08001 * 120.12874 * 179.97438 * 17 16 15 48 48 H 0.96997 * 120.00167 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0350 0.8858 -1.2542 6 6 5.4976 0.4816 -1.0587 7 6 4.0356 2.7930 0.2376 8 6 3.8389 3.1651 1.7085 9 7 4.2958 4.5393 1.9299 10 16 3.8867 5.3333 3.3244 11 8 4.5364 6.5960 3.2726 12 8 2.4807 5.1882 3.4711 13 6 4.6200 4.4508 4.6615 14 6 3.8253 3.8421 5.6060 15 6 4.3996 3.1467 6.6587 16 6 5.7785 3.0562 6.7733 17 6 6.5924 3.6578 5.8413 18 6 6.0203 4.3607 4.7646 19 6 6.8468 4.9767 3.7966 20 1 6.5094 5.0624 2.7743 21 6 8.1019 5.4752 4.1634 22 7 8.3930 5.6492 5.4269 23 14 9.3619 5.8921 2.8487 24 1 8.7507 5.7226 1.5059 25 1 9.8054 7.2993 3.0166 26 1 10.5310 4.9858 2.9784 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.4506 0.0101 -1.5362 35 1 3.9676 1.6366 -2.0415 36 1 5.9056 0.1252 -2.0046 37 1 6.0705 1.3441 -0.7180 38 1 5.5588 -0.3123 -0.3143 39 1 3.5039 3.5066 -0.3920 40 1 5.0982 2.8165 -0.0042 41 1 4.4154 2.4851 2.3356 42 1 2.7822 3.0878 1.9647 43 1 4.8379 4.9841 1.2597 44 1 2.7501 3.9058 5.5264 45 1 3.7683 2.6717 7.3951 46 1 6.2152 2.5115 7.5973 47 1 7.6662 3.5865 5.9327 48 1 9.2631 5.9944 5.6811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601363345.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:58 Heat of formation + Delta-G solvation = -87.172387 kcal Electronic energy + Delta-G solvation = -28510.978931 eV Core-core repulsion = 24691.156371 eV Total energy + Delta-G solvation = -3819.822561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.47116 -39.35380 -38.03123 -36.67447 -36.24021 -35.61467 -34.28045 -32.03691 -31.60330 -31.37671 -28.94549 -27.32983 -26.04510 -23.73629 -23.45136 -22.95438 -22.68824 -21.25548 -20.23703 -19.48587 -18.49164 -17.92773 -17.30453 -17.07870 -16.79000 -16.34505 -16.02694 -15.85370 -15.71333 -15.19902 -15.09532 -14.91722 -14.62755 -14.44985 -14.09998 -13.79199 -13.67455 -13.34093 -13.29346 -12.99288 -12.96091 -12.87466 -12.83189 -12.80841 -12.65864 -12.58860 -12.54127 -12.41063 -12.11575 -12.08927 -11.83147 -11.65305 -11.61785 -11.23058 -11.17044 -11.11531 -10.24848 -9.83248 -9.41870 -9.27127 -8.80448 -6.59340 -0.17445 0.53592 0.97164 1.37509 1.49986 1.52926 2.16878 2.27560 2.63255 2.97717 2.99736 3.47436 3.77903 3.90711 4.00381 4.11406 4.20851 4.28818 4.33708 4.42615 4.48690 4.50094 4.53077 4.63688 4.65723 4.72224 4.73890 4.86553 4.88632 4.97165 4.99102 5.04237 5.11554 5.12731 5.20664 5.25529 5.30401 5.34445 5.43874 5.47491 5.52930 5.70815 5.80363 5.99356 6.08564 6.10094 6.20136 6.24204 6.47146 6.69449 6.83253 8.19261 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.004070 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.855150 B = 6878.595169 C = 7886.673074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.046 3.954 4 N -0.547 5.547 5 C 0.049 3.951 6 C -0.147 4.147 7 C 0.055 3.945 8 C 0.129 3.871 9 N -1.110 6.110 10 S 2.722 3.278 11 O -0.998 6.998 12 O -1.009 7.009 13 C -0.790 4.790 14 C -0.016 4.016 15 C -0.249 4.249 16 C -0.074 4.074 17 C -0.184 4.184 18 C 0.168 3.832 19 C -0.482 4.482 20 H 0.096 0.904 21 C 0.041 3.959 22 N -0.810 5.810 23 Si 0.975 3.025 24 H -0.245 1.245 25 H -0.270 1.270 26 H -0.256 1.256 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.420 0.580 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.106 0.894 48 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -10.245 -12.891 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.081 4.081 4 N -0.273 5.273 5 C -0.078 4.078 6 C -0.205 4.205 7 C -0.074 4.074 8 C 0.002 3.998 9 N -0.871 5.871 10 S 2.818 3.182 11 O -0.988 6.988 12 O -0.999 6.999 13 C -0.884 4.884 14 C -0.036 4.036 15 C -0.269 4.269 16 C -0.093 4.093 17 C -0.204 4.204 18 C 0.163 3.837 19 C -0.511 4.511 20 H 0.114 0.886 21 C -0.177 4.177 22 N -0.434 5.434 23 Si 0.794 3.206 24 H -0.168 1.168 25 H -0.195 1.195 26 H -0.180 1.180 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.256 0.744 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.124 0.876 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.699 -9.782 -12.190 16.636 hybrid contribution 1.039 0.638 -0.387 1.280 sum -4.660 -9.144 -12.577 16.232 Atomic orbital electron populations 1.21734 0.94914 1.02294 1.01881 1.21518 0.95960 0.95331 1.02573 1.22310 0.86663 0.98251 1.00914 1.61857 1.08077 1.21148 1.36194 1.22194 0.96843 0.99664 0.89122 1.21791 0.95144 1.01486 1.02083 1.22187 1.01651 0.89622 0.93981 1.21138 0.99411 0.80791 0.98455 1.55219 1.69836 1.25653 1.36363 1.00276 0.72011 0.72737 0.73136 1.93491 1.76911 1.41517 1.86905 1.93420 1.31965 1.87444 1.87120 1.30187 1.03788 1.31042 1.23377 1.20592 0.98176 0.92214 0.92636 1.20893 0.94855 1.09161 1.01949 1.21238 0.94145 0.96704 0.97175 1.21418 0.98985 1.01728 0.98289 1.17290 0.89323 0.85717 0.91346 1.20147 1.01172 1.32334 0.97412 0.88594 1.26797 1.00226 0.92310 0.98391 1.69840 1.23301 1.30827 1.19398 0.85254 0.77447 0.78726 0.79132 1.16802 1.19470 1.17975 0.91648 0.93132 0.92360 0.91052 0.92025 0.91506 0.94222 0.89302 0.94315 0.90901 0.93405 0.92678 0.93182 0.89282 0.92055 0.91215 0.74404 0.86021 0.85399 0.85873 0.87605 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.52 16 2 C -0.12 -1.97 5.90 30.60 0.18 -1.79 16 3 C 0.05 0.93 4.80 86.31 0.41 1.35 16 4 N -0.55 -11.92 4.39 -896.25 -3.94 -15.85 16 5 C 0.05 0.85 5.56 86.30 0.48 1.33 16 6 C -0.15 -2.57 10.05 71.98 0.72 -1.85 16 7 C 0.06 1.32 4.95 86.30 0.43 1.74 16 8 C 0.13 3.93 6.32 86.38 0.55 4.47 16 9 N -1.11 -38.41 5.01 -187.49 -0.94 -39.35 16 10 S 2.72 120.50 4.96 -56.49 -0.28 120.22 16 11 O -1.00 -50.69 16.73 -128.00 -2.14 -52.83 16 12 O -1.01 -45.97 16.51 -128.00 -2.11 -48.08 16 13 C -0.79 -38.30 5.90 22.73 0.13 -38.17 16 14 C -0.02 -0.75 9.53 22.22 0.21 -0.54 16 15 C -0.25 -10.56 10.05 22.46 0.23 -10.33 16 16 C -0.07 -3.27 10.02 22.22 0.22 -3.04 16 17 C -0.18 -9.24 8.65 22.73 0.20 -9.05 16 18 C 0.17 8.68 5.49 -21.29 -0.12 8.56 16 19 C -0.48 -24.46 7.55 23.46 0.18 -24.28 16 20 H 0.10 4.49 5.89 -2.91 -0.02 4.48 16 21 C 0.04 1.98 5.14 85.26 0.44 2.42 16 22 N -0.81 -40.97 11.29 21.82 0.25 -40.72 16 23 Si 0.98 36.35 29.59 68.60 2.03 38.38 16 24 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 25 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.07 1.05 6.26 -2.39 -0.01 1.03 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.54 6.46 -2.39 -0.02 1.52 16 33 H 0.04 0.74 8.12 -2.39 -0.02 0.72 16 34 H 0.09 1.32 5.90 -2.39 -0.01 1.31 16 35 H 0.04 0.63 8.02 -2.39 -0.02 0.61 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.05 0.93 6.58 -2.39 -0.02 0.92 16 38 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.05 1.11 8.03 -2.38 -0.02 1.09 16 40 H 0.09 2.04 6.37 -2.39 -0.02 2.02 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.07 2.16 6.25 -2.39 -0.01 2.14 16 43 H 0.42 12.73 8.42 -96.75 -0.81 11.91 16 44 H 0.12 5.05 7.33 -2.91 -0.02 5.03 16 45 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 46 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 47 H 0.11 5.41 6.60 -2.91 -0.02 5.39 16 48 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 Total: -1.00 -64.91 391.27 -2.01 -66.92 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: 0.15 Total: 42.01 kcal Atomic # 6 Polarization: -75.66 SS G_CDS: 4.97 Total: -70.69 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -4.63 Total: -95.92 kcal Atomic # 8 Polarization: -96.66 SS G_CDS: -4.25 Total: -100.91 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Atomic # 16 Polarization: 120.50 SS G_CDS: -0.28 Total: 120.22 kcal Total: -64.91 -2.01 -66.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601363345.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.249 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds