Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 N 1.46506 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99936 * 85.00335 * 4 3 2 6 6 C 1.50704 * 109.46882 * 84.99554 * 5 4 3 7 7 C 1.38231 * 120.00136 * 269.72302 * 6 5 4 8 8 C 1.38236 * 119.99679 * 179.74662 * 7 6 5 9 9 C 1.38229 * 120.00392 * 0.55520 * 8 7 6 10 10 C 1.50702 * 120.00240 * 179.72303 * 9 8 7 11 11 C 1.38242 * 119.99756 * 359.70122 * 9 8 7 12 12 C 1.38233 * 119.99871 * 0.02562 * 11 9 8 13 13 S 1.65597 * 120.00079 * 264.72374 * 4 3 2 14 14 O 1.42095 * 106.40469 * 203.54076 * 13 4 3 15 15 O 1.42098 * 106.40441 * 336.46418 * 13 4 3 16 16 N 1.65602 * 107.21619 * 90.00287 * 13 4 3 17 17 C 1.46497 * 119.99875 * 269.99905 * 16 13 4 18 18 C 1.46500 * 119.99931 * 89.99936 * 16 13 4 19 19 C 1.50698 * 109.46980 * 95.00148 * 18 16 13 20 20 H 1.08000 * 120.00441 * 359.97438 * 19 18 16 21 21 C 1.37879 * 120.00117 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99752 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00375 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46729 * 60.00142 * 23 21 19 25 25 H 1.48495 * 109.47632 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47161 * 300.00276 * 23 21 19 27 27 H 1.08999 * 109.46714 * 299.99418 * 1 2 3 28 28 H 1.08999 * 109.46872 * 59.99661 * 1 2 3 29 29 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46645 * 240.00074 * 2 1 3 31 31 H 1.09002 * 109.47370 * 120.00340 * 2 1 3 32 32 H 1.08999 * 109.46886 * 60.00687 * 3 2 1 33 33 H 1.08999 * 109.47559 * 299.99918 * 3 2 1 34 34 H 1.08991 * 109.47463 * 204.99792 * 5 4 3 35 35 H 1.09000 * 109.46878 * 325.00020 * 5 4 3 36 36 H 1.08004 * 120.00038 * 0.02562 * 7 6 5 37 37 H 1.08010 * 119.99653 * 180.27655 * 8 7 6 38 38 H 1.08998 * 109.46977 * 269.97553 * 10 9 8 39 39 H 1.08999 * 109.47026 * 29.98251 * 10 9 8 40 40 H 1.09000 * 109.46546 * 149.97958 * 10 9 8 41 41 H 1.07997 * 119.99883 * 179.97438 * 11 9 8 42 42 H 1.07997 * 119.99995 * 179.97438 * 12 11 9 43 43 H 1.09007 * 109.47243 * 90.00214 * 17 16 13 44 44 H 1.09002 * 109.47421 * 210.00096 * 17 16 13 45 45 H 1.08996 * 109.47455 * 329.99992 * 17 16 13 46 46 H 1.09001 * 109.46807 * 214.99565 * 18 16 13 47 47 H 1.08998 * 109.47493 * 335.00134 * 18 16 13 48 48 H 0.97005 * 120.00044 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2370 1.3321 -1.2648 6 6 4.3806 2.6989 -1.8831 7 6 3.4163 3.1677 -2.7555 8 6 3.5455 4.4236 -3.3185 9 6 4.6446 5.2061 -3.0179 10 6 4.7885 6.5728 -3.6365 11 6 5.6116 4.7352 -2.1495 12 6 5.4797 3.4816 -1.5822 13 16 4.3337 1.5740 1.4271 14 8 5.6165 2.0907 1.1004 15 8 3.4525 2.2054 2.3458 16 7 4.5790 0.0378 1.9948 17 6 3.5891 -0.5834 2.8781 18 6 5.7860 -0.6999 1.6138 19 6 6.8386 -0.5248 2.6779 20 1 6.6296 0.0761 3.5506 21 6 8.0689 -1.1311 2.5370 22 7 8.3236 -1.8625 1.4741 23 14 9.3740 -0.9136 3.8557 24 1 8.8629 -1.4355 5.1487 25 1 10.5974 -1.6614 3.4696 26 1 9.6988 0.5284 3.9976 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2253 0.9126 -1.0771 35 1 3.6893 0.6809 -1.9461 36 1 2.5598 2.5545 -2.9939 37 1 2.7898 4.7917 -3.9967 38 1 5.3333 6.4903 -4.5770 39 1 3.8002 6.9923 -3.8246 40 1 5.3361 7.2240 -2.9553 41 1 6.4706 5.3464 -1.9150 42 1 6.2353 3.1135 -0.9041 43 1 2.8523 -1.1184 2.2788 44 1 4.0886 -1.2824 3.5490 45 1 3.0897 0.1883 3.4639 46 1 5.5472 -1.7583 1.5096 47 1 6.1615 -0.3170 0.6649 48 1 9.1893 -2.2888 1.3748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603555632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -61.804680 kcal Electronic energy + Delta-G solvation = -29018.148515 eV Core-core repulsion = 25199.425981 eV Total energy + Delta-G solvation = -3818.722534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.42431 -36.94895 -36.62904 -35.48221 -35.12972 -33.72567 -32.43207 -31.97398 -30.78556 -28.36536 -27.77222 -25.88478 -25.03464 -23.95318 -22.60474 -22.25432 -21.46193 -20.66614 -18.38487 -17.40224 -16.77723 -16.38689 -16.21243 -15.75956 -15.19505 -15.10882 -14.91966 -14.60909 -14.26981 -13.88821 -13.73892 -13.55732 -13.30578 -13.26404 -12.86771 -12.60947 -12.34283 -12.28972 -12.18463 -12.10096 -11.98826 -11.74960 -11.58880 -11.53566 -11.28361 -11.14696 -11.10827 -11.06105 -11.00203 -10.72216 -10.67547 -10.52673 -10.44796 -10.02562 -9.76553 -8.90301 -8.77493 -8.46773 -8.43549 -8.03560 -6.06776 -4.10705 1.11209 1.48547 1.55090 3.33613 3.37058 3.41540 3.46237 3.88454 4.14140 4.44628 4.79367 4.83542 4.87655 4.91539 5.00448 5.10176 5.11982 5.17418 5.25636 5.27783 5.37967 5.49379 5.51453 5.60778 5.64812 5.67950 5.72739 5.76627 5.83858 5.90517 5.91546 5.98030 5.99538 6.16716 6.23156 6.24239 6.34801 6.42654 6.52941 6.53703 6.71230 6.76444 6.86584 7.16182 7.21978 7.40688 7.60883 7.90779 8.20288 8.91394 9.54554 11.01613 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.004353 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.056369 B = 6430.441780 C = 8235.266385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 C 0.117 3.883 4 N -1.005 6.005 5 C 0.165 3.835 6 C -0.111 4.111 7 C -0.102 4.102 8 C -0.131 4.131 9 C -0.090 4.090 10 C -0.113 4.113 11 C -0.124 4.124 12 C -0.093 4.093 13 S 2.778 3.222 14 O -0.959 6.959 15 O -0.997 6.997 16 N -0.996 5.996 17 C 0.094 3.906 18 C 0.259 3.741 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.896 5.896 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.121 0.879 42 H 0.145 0.855 43 H 0.040 0.960 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.036 0.964 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 7.673 -9.934 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C -0.009 4.009 4 N -0.841 5.841 5 C 0.040 3.960 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.149 4.149 9 C -0.090 4.090 10 C -0.169 4.169 11 C -0.143 4.143 12 C -0.112 4.112 13 S 2.787 3.213 14 O -0.942 6.942 15 O -0.981 6.981 16 N -0.838 5.838 17 C -0.053 4.053 18 C 0.137 3.863 19 C -0.569 4.569 20 H 0.077 0.923 21 C -0.139 4.139 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.162 0.838 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.236 8.342 -9.598 18.355 hybrid contribution 0.668 -0.382 0.469 0.901 sum -12.568 7.960 -9.128 17.454 Atomic orbital electron populations 1.21694 0.95383 1.01764 1.01798 1.22107 0.95968 0.97682 1.03313 1.21352 0.79194 0.96664 1.03693 1.58310 1.14546 1.89338 1.21882 1.20125 0.97723 0.92919 0.85265 1.20308 0.95298 0.97616 0.98044 1.20988 0.98246 0.95846 0.97016 1.20922 0.98032 0.94761 1.01194 1.19933 0.95018 0.96439 0.97656 1.20774 1.02237 0.93358 1.00558 1.21092 0.98983 0.96427 0.97750 1.21583 0.97961 0.93684 0.97927 1.02109 0.72882 0.73692 0.72637 1.93586 1.39274 1.77602 1.83782 1.93497 1.67895 1.74705 1.62036 1.57676 1.30464 1.35619 1.60070 1.21401 0.91131 0.98851 0.93919 1.19026 0.79245 0.92103 0.95904 1.21453 0.98017 1.31081 1.06325 0.92302 1.24910 0.98169 0.94916 0.95868 1.69905 1.23421 1.32566 1.27568 0.86598 0.80776 0.78529 0.81807 1.20190 1.21156 1.19984 0.92525 0.92812 0.92565 0.91433 0.91106 0.89445 0.90685 0.88638 0.89898 0.86350 0.86489 0.91372 0.91824 0.91648 0.86124 0.83759 0.94138 0.90391 0.91708 0.94825 0.94603 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.15 -1.69 6.26 -26.73 -0.17 -1.86 16 3 C 0.12 1.48 5.68 -4.04 -0.02 1.46 16 4 N -1.00 -15.63 2.82 -115.66 -0.33 -15.96 16 5 C 0.17 2.39 5.47 -5.19 -0.03 2.37 16 6 C -0.11 -1.61 5.46 -104.62 -0.57 -2.18 16 7 C -0.10 -1.25 9.38 -39.58 -0.37 -1.62 16 8 C -0.13 -1.51 9.70 -39.59 -0.38 -1.90 16 9 C -0.09 -1.09 5.88 -104.62 -0.62 -1.71 16 10 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 11 C -0.12 -1.72 9.70 -39.58 -0.38 -2.11 16 12 C -0.09 -1.48 9.27 -39.58 -0.37 -1.85 16 13 S 2.78 55.96 6.02 -107.50 -0.65 55.32 16 14 O -0.96 -22.24 14.18 -57.17 -0.81 -23.05 16 15 O -1.00 -21.26 15.29 -57.17 -0.87 -22.13 16 16 N -1.00 -20.64 3.23 -123.05 -0.40 -21.04 16 17 C 0.09 1.62 10.45 59.85 0.63 2.25 16 18 C 0.26 6.38 5.08 -5.19 -0.03 6.36 16 19 C -0.53 -14.76 9.38 -34.44 -0.32 -15.08 16 20 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 21 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 23 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.87 5.70 -51.93 -0.30 0.58 16 32 H 0.09 1.19 6.91 -51.93 -0.36 0.83 16 33 H 0.07 0.80 7.63 -51.93 -0.40 0.41 16 34 H 0.10 1.55 7.29 -51.93 -0.38 1.17 16 35 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 36 H 0.12 1.17 7.92 -52.48 -0.42 0.75 16 37 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.14 2.59 6.59 -52.49 -0.35 2.25 16 43 H 0.04 0.58 6.00 -51.93 -0.31 0.27 16 44 H 0.08 1.37 8.07 -51.93 -0.42 0.96 16 45 H 0.06 1.08 7.02 -51.93 -0.36 0.71 16 46 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 47 H 0.04 0.92 7.34 -51.93 -0.38 0.54 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -32.60 398.52 -11.19 -43.79 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.85 Total: 1.16 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.00 Total: -15.79 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.01 Total: -62.04 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.68 Total: -45.18 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 55.96 SS G_CDS: -0.65 Total: 55.32 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.60 -11.19 -43.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603555632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.015 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds