Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 N 1.46506 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99936 * 85.00335 * 4 3 2 6 6 C 1.50704 * 109.46882 * 84.99554 * 5 4 3 7 7 C 1.38231 * 120.00136 * 269.72302 * 6 5 4 8 8 C 1.38236 * 119.99679 * 179.74662 * 7 6 5 9 9 C 1.38229 * 120.00392 * 0.55520 * 8 7 6 10 10 C 1.50702 * 120.00240 * 179.72303 * 9 8 7 11 11 C 1.38242 * 119.99756 * 359.70122 * 9 8 7 12 12 C 1.38233 * 119.99871 * 0.02562 * 11 9 8 13 13 S 1.65597 * 120.00079 * 264.72374 * 4 3 2 14 14 O 1.42095 * 106.40469 * 203.54076 * 13 4 3 15 15 O 1.42098 * 106.40441 * 336.46418 * 13 4 3 16 16 N 1.65602 * 107.21619 * 90.00287 * 13 4 3 17 17 C 1.46497 * 119.99875 * 269.99905 * 16 13 4 18 18 C 1.46500 * 119.99931 * 89.99936 * 16 13 4 19 19 C 1.50698 * 109.46980 * 95.00148 * 18 16 13 20 20 H 1.08000 * 120.00441 * 359.97438 * 19 18 16 21 21 C 1.37879 * 120.00117 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99752 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00375 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46729 * 60.00142 * 23 21 19 25 25 H 1.48495 * 109.47632 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47161 * 300.00276 * 23 21 19 27 27 H 1.08999 * 109.46714 * 299.99418 * 1 2 3 28 28 H 1.08999 * 109.46872 * 59.99661 * 1 2 3 29 29 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46645 * 240.00074 * 2 1 3 31 31 H 1.09002 * 109.47370 * 120.00340 * 2 1 3 32 32 H 1.08999 * 109.46886 * 60.00687 * 3 2 1 33 33 H 1.08999 * 109.47559 * 299.99918 * 3 2 1 34 34 H 1.08991 * 109.47463 * 204.99792 * 5 4 3 35 35 H 1.09000 * 109.46878 * 325.00020 * 5 4 3 36 36 H 1.08004 * 120.00038 * 0.02562 * 7 6 5 37 37 H 1.08010 * 119.99653 * 180.27655 * 8 7 6 38 38 H 1.08998 * 109.46977 * 269.97553 * 10 9 8 39 39 H 1.08999 * 109.47026 * 29.98251 * 10 9 8 40 40 H 1.09000 * 109.46546 * 149.97958 * 10 9 8 41 41 H 1.07997 * 119.99883 * 179.97438 * 11 9 8 42 42 H 1.07997 * 119.99995 * 179.97438 * 12 11 9 43 43 H 1.09007 * 109.47243 * 90.00214 * 17 16 13 44 44 H 1.09002 * 109.47421 * 210.00096 * 17 16 13 45 45 H 1.08996 * 109.47455 * 329.99992 * 17 16 13 46 46 H 1.09001 * 109.46807 * 214.99565 * 18 16 13 47 47 H 1.08998 * 109.47493 * 335.00134 * 18 16 13 48 48 H 0.97005 * 120.00044 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2370 1.3321 -1.2648 6 6 4.3806 2.6989 -1.8831 7 6 3.4163 3.1677 -2.7555 8 6 3.5455 4.4236 -3.3185 9 6 4.6446 5.2061 -3.0179 10 6 4.7885 6.5728 -3.6365 11 6 5.6116 4.7352 -2.1495 12 6 5.4797 3.4816 -1.5822 13 16 4.3337 1.5740 1.4271 14 8 5.6165 2.0907 1.1004 15 8 3.4525 2.2054 2.3458 16 7 4.5790 0.0378 1.9948 17 6 3.5891 -0.5834 2.8781 18 6 5.7860 -0.6999 1.6138 19 6 6.8386 -0.5248 2.6779 20 1 6.6296 0.0761 3.5506 21 6 8.0689 -1.1311 2.5370 22 7 8.3236 -1.8625 1.4741 23 14 9.3740 -0.9136 3.8557 24 1 8.8629 -1.4355 5.1487 25 1 10.5974 -1.6614 3.4696 26 1 9.6988 0.5284 3.9976 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2253 0.9126 -1.0771 35 1 3.6893 0.6809 -1.9461 36 1 2.5598 2.5545 -2.9939 37 1 2.7898 4.7917 -3.9967 38 1 5.3333 6.4903 -4.5770 39 1 3.8002 6.9923 -3.8246 40 1 5.3361 7.2240 -2.9553 41 1 6.4706 5.3464 -1.9150 42 1 6.2353 3.1135 -0.9041 43 1 2.8523 -1.1184 2.2788 44 1 4.0886 -1.2824 3.5490 45 1 3.0897 0.1883 3.4639 46 1 5.5472 -1.7583 1.5096 47 1 6.1615 -0.3170 0.6649 48 1 9.1893 -2.2888 1.3748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603555632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = -81.203853 kcal Electronic energy + Delta-G solvation = -29018.989726 eV Core-core repulsion = 25199.425981 eV Total energy + Delta-G solvation = -3819.563745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43961 -38.39896 -37.95535 -37.22699 -36.83666 -34.69132 -34.48943 -32.92998 -31.78877 -29.69989 -29.28987 -26.96506 -26.62348 -25.02692 -24.17680 -23.59109 -22.39344 -21.70415 -19.83670 -19.03540 -18.44722 -18.26095 -17.57604 -16.90138 -16.72314 -16.21715 -16.10368 -15.90532 -15.53314 -15.18699 -15.03532 -14.79508 -14.52291 -14.28912 -14.10713 -13.94816 -13.81399 -13.73668 -13.34878 -13.33603 -13.15097 -13.06505 -12.95654 -12.91937 -12.76207 -12.57329 -12.52405 -12.47441 -12.30907 -12.16363 -12.00357 -11.94378 -11.78677 -11.73454 -11.40449 -10.60876 -10.08484 -9.80149 -9.79108 -9.44273 -8.21607 -6.33381 -0.39873 0.41010 0.52693 1.37210 1.40511 1.47680 2.02913 2.38046 2.54176 2.89696 3.09117 3.39008 3.70012 3.85550 3.97814 4.06661 4.10482 4.16350 4.19068 4.22279 4.39440 4.46700 4.56749 4.63592 4.65165 4.71834 4.76852 4.79891 4.85204 4.92028 4.96515 4.98274 5.01298 5.05901 5.16667 5.23172 5.27898 5.30290 5.36062 5.44175 5.50387 5.53580 5.62705 5.69648 5.72473 5.78515 5.95436 6.09880 6.16391 6.73925 7.35263 8.85488 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.004353 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.056369 B = 6430.441780 C = 8235.266385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 C 0.111 3.889 4 N -0.994 5.994 5 C 0.165 3.835 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.128 4.128 9 C -0.091 4.091 10 C -0.111 4.111 11 C -0.142 4.142 12 C -0.125 4.125 13 S 2.785 3.215 14 O -0.999 6.999 15 O -1.012 7.012 16 N -1.003 6.003 17 C 0.088 3.912 18 C 0.277 3.723 19 C -0.552 4.552 20 H 0.048 0.952 21 C 0.016 3.984 22 N -0.921 5.921 23 Si 0.952 3.048 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.279 1.279 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.027 0.973 47 H 0.017 0.983 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.109 8.199 -11.526 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.189 4.189 3 C -0.014 4.014 4 N -0.833 5.833 5 C 0.040 3.960 6 C -0.128 4.128 7 C -0.115 4.115 8 C -0.146 4.146 9 C -0.092 4.092 10 C -0.167 4.167 11 C -0.160 4.160 12 C -0.144 4.144 13 S 2.795 3.205 14 O -0.982 6.982 15 O -0.996 6.996 16 N -0.844 5.844 17 C -0.058 4.058 18 C 0.153 3.847 19 C -0.591 4.591 20 H 0.066 0.934 21 C -0.184 4.184 22 N -0.560 5.560 23 Si 0.777 3.223 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.205 1.205 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.169 0.831 37 H 0.170 0.830 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.142 0.858 42 H 0.125 0.875 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.035 0.965 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.703 8.862 -11.164 21.207 hybrid contribution 1.358 -0.479 0.887 1.691 sum -14.345 8.383 -10.277 19.536 Atomic orbital electron populations 1.21673 0.93378 1.02585 1.02591 1.22094 0.97635 0.96208 1.02962 1.21654 0.76865 0.98218 1.04621 1.57936 1.15826 1.89027 1.20539 1.20215 0.96763 0.93925 0.85069 1.20325 0.95807 0.97358 0.99326 1.21308 0.98155 0.96473 0.95570 1.21375 0.98213 0.94194 1.00813 1.20331 0.94377 0.97903 0.96541 1.20834 1.03648 0.91446 1.00820 1.21238 1.00170 0.95883 0.98685 1.21468 0.98522 0.95400 0.99028 1.01618 0.72257 0.73344 0.73282 1.93542 1.41804 1.78425 1.84470 1.93464 1.67887 1.74969 1.63318 1.57578 1.30152 1.35433 1.61250 1.21604 0.90983 0.99092 0.94088 1.18569 0.80090 0.91782 0.94249 1.21789 0.99449 1.31058 1.06811 0.93379 1.25684 1.00116 0.94626 0.97927 1.69990 1.24069 1.33094 1.28893 0.85704 0.78615 0.78194 0.79802 1.18864 1.19900 1.20463 0.92649 0.91150 0.91761 0.90641 0.92653 0.90453 0.87740 0.91667 0.86327 0.83134 0.83003 0.90105 0.89885 0.91518 0.85833 0.87508 0.90819 0.91055 0.91098 0.95479 0.96515 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 71.98 0.71 -1.41 16 2 C -0.15 -2.98 6.26 30.59 0.19 -2.79 16 3 C 0.11 2.59 5.68 86.38 0.49 3.08 16 4 N -0.99 -30.79 2.82 -519.85 -1.47 -32.25 16 5 C 0.17 4.81 5.47 85.63 0.47 5.28 16 6 C -0.13 -3.64 5.46 -19.86 -0.11 -3.75 16 7 C -0.10 -2.08 9.38 22.27 0.21 -1.87 16 8 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 9 C -0.09 -2.04 5.88 -19.86 -0.12 -2.16 16 10 C -0.11 -1.69 10.01 71.24 0.71 -0.98 16 11 C -0.14 -4.03 9.70 22.27 0.22 -3.82 16 12 C -0.13 -4.24 9.27 22.27 0.21 -4.03 16 13 S 2.79 116.33 6.02 -56.49 -0.34 115.99 16 14 O -1.00 -49.61 14.18 -128.00 -1.81 -51.42 16 15 O -1.01 -44.00 15.29 -128.00 -1.96 -45.96 16 16 N -1.00 -42.84 3.23 -543.23 -1.75 -44.59 16 17 C 0.09 3.05 10.45 127.77 1.33 4.38 16 18 C 0.28 14.21 5.08 85.63 0.43 14.65 16 19 C -0.55 -31.83 9.38 25.60 0.24 -31.59 16 20 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 21 C 0.02 0.94 5.46 84.66 0.46 1.40 16 22 N -0.92 -54.19 13.29 21.45 0.28 -53.90 16 23 Si 0.95 45.20 29.54 68.60 2.03 47.23 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.27 5.70 -2.39 -0.01 1.25 16 32 H 0.08 1.99 6.91 -2.39 -0.02 1.98 16 33 H 0.10 1.85 7.63 -2.39 -0.02 1.83 16 34 H 0.06 2.29 7.29 -2.39 -0.02 2.27 16 35 H 0.12 2.54 8.05 -2.39 -0.02 2.52 16 36 H 0.15 2.23 7.92 -2.91 -0.02 2.20 16 37 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 40 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 41 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 42 H 0.11 4.34 6.59 -2.91 -0.02 4.32 16 43 H 0.07 2.05 6.00 -2.38 -0.01 2.04 16 44 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 45 H 0.07 2.36 7.02 -2.39 -0.02 2.34 16 46 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 47 H 0.02 0.92 7.34 -2.39 -0.02 0.91 16 48 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -73.62 398.52 1.58 -72.04 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.93 Total: 18.78 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 5.67 Total: -25.92 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -2.94 Total: -130.75 kcal Atomic # 8 Polarization: -93.61 SS G_CDS: -3.77 Total: -97.38 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 116.33 SS G_CDS: -0.34 Total: 115.99 kcal Total: -73.62 1.58 -72.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603555632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.162 kcal (2) G-P(sol) polarization free energy of solvation -73.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds