Wall clock time and date at job start Sat Apr 11 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47392 * 2 1 4 4 H 1.09000 * 109.47282 * 55.00185 * 3 2 1 5 5 C 1.52999 * 109.47535 * 174.99990 * 3 2 1 6 6 N 1.46903 * 109.46946 * 295.00252 * 3 2 1 7 7 C 1.46896 * 110.99961 * 298.94943 * 6 3 2 8 8 C 1.46900 * 110.99889 * 175.00059 * 6 3 2 9 9 C 1.52999 * 109.47133 * 189.99710 * 8 6 3 10 10 N 1.46496 * 109.47393 * 179.97438 * 9 8 6 11 11 S 1.65597 * 120.00464 * 165.00168 * 10 9 8 12 12 O 1.42096 * 106.40808 * 178.53993 * 11 10 9 13 13 O 1.42098 * 106.40131 * 311.46084 * 11 10 9 14 14 C 1.76201 * 107.21733 * 64.99948 * 11 10 9 15 15 C 1.38660 * 119.87441 * 269.72577 * 14 11 10 16 16 C 1.38617 * 120.49928 * 179.72118 * 15 14 11 17 17 C 1.37634 * 120.24606 * 0.55713 * 16 15 14 18 18 C 1.40694 * 119.74891 * 359.72381 * 17 16 15 19 19 C 1.41396 * 120.24872 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00057 * 155.24659 * 19 18 17 21 21 C 1.39950 * 119.99734 * 335.25510 * 19 18 17 22 22 N 1.30820 * 120.00076 * 342.24615 * 21 19 18 23 23 Si 1.86795 * 119.99829 * 162.25041 * 21 19 18 24 24 H 1.48503 * 109.47361 * 59.99694 * 23 21 19 25 25 H 1.48498 * 109.47000 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47364 * 299.99866 * 23 21 19 27 27 C 1.37597 * 119.87812 * 90.00391 * 14 11 10 28 28 H 1.08992 * 109.47112 * 59.99983 * 1 2 3 29 29 H 1.08996 * 109.47441 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46620 * 299.99969 * 1 2 3 31 31 H 1.08997 * 109.47303 * 239.99752 * 2 1 3 32 32 H 1.09000 * 109.47309 * 120.00214 * 2 1 3 33 33 H 1.09000 * 109.46676 * 59.99824 * 5 3 2 34 34 H 1.08996 * 109.47553 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47265 * 300.00592 * 5 3 2 36 36 H 1.09008 * 109.47151 * 59.99944 * 7 6 3 37 37 H 1.09002 * 109.47555 * 180.02562 * 7 6 3 38 38 H 1.09004 * 109.47470 * 300.00461 * 7 6 3 39 39 H 1.08999 * 109.47189 * 309.99494 * 8 6 3 40 40 H 1.09001 * 109.47304 * 69.99690 * 8 6 3 41 41 H 1.08998 * 109.47427 * 299.99991 * 9 8 6 42 42 H 1.09001 * 109.47041 * 59.99819 * 9 8 6 43 43 H 0.97005 * 119.99799 * 344.99986 * 10 9 8 44 44 H 1.07995 * 119.74934 * 0.02562 * 15 14 11 45 45 H 1.08000 * 119.87512 * 180.26701 * 16 15 14 46 46 H 1.08003 * 120.12805 * 179.74706 * 17 16 15 47 47 H 0.96990 * 120.00039 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.12301 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 7 1.6514 2.0992 -1.2552 7 6 2.2407 1.4131 -2.4128 8 6 2.0209 3.5209 -1.2418 9 6 1.3865 4.2241 -2.4435 10 7 1.7544 5.6420 -2.4299 11 16 1.5311 6.5686 -3.7841 12 8 1.9464 7.8841 -3.4433 13 8 2.0849 5.8351 -4.8678 14 6 -0.2043 6.6547 -4.0767 15 6 -0.8169 5.7062 -4.8814 16 6 -2.1822 5.7583 -5.1156 17 6 -2.9432 6.7613 -4.5596 18 6 -2.3314 7.7326 -3.7462 19 6 -3.1032 8.7673 -3.1692 20 1 -2.7641 9.2553 -2.2673 21 6 -4.3066 9.1589 -3.7666 22 7 -4.5544 8.8375 -5.0103 23 14 -5.5589 10.1407 -2.7883 24 1 -4.9472 11.4183 -2.3423 25 1 -6.7387 10.4290 -3.6428 26 1 -5.9860 9.3559 -1.6022 27 6 -0.9455 7.6664 -3.5106 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.9994 0.9052 -0.7161 34 1 3.9283 2.4719 0.1253 35 1 3.8533 0.9569 1.0571 36 1 1.8948 0.3796 -2.4374 37 1 1.9373 1.9200 -3.3288 38 1 3.3275 1.4306 -2.3310 39 1 1.6624 3.9808 -0.3209 40 1 3.1054 3.6150 -1.2967 41 1 1.7449 3.7642 -3.3645 42 1 0.3019 4.1300 -2.3886 43 1 2.1289 6.0382 -1.6275 44 1 -0.2268 4.9180 -5.3250 45 1 -2.6496 5.0117 -5.7406 46 1 -4.0061 6.8024 -4.7467 47 1 -5.3883 9.1093 -5.4245 48 1 -0.4655 8.4065 -2.8875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619482039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:07 Heat of formation + Delta-G solvation = -62.484862 kcal Electronic energy + Delta-G solvation = -27721.279793 eV Core-core repulsion = 23902.527763 eV Total energy + Delta-G solvation = -3818.752029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.15378 -37.62134 -36.67172 -35.52374 -35.28491 -33.82719 -32.90952 -30.06095 -29.95173 -29.77510 -28.33154 -26.00104 -25.46812 -23.89460 -21.97167 -21.73690 -20.95416 -19.80757 -19.05422 -17.98458 -17.00668 -16.75469 -15.94117 -15.74372 -15.46185 -15.08756 -14.89355 -14.73065 -14.35152 -14.19661 -13.92448 -13.58282 -13.43858 -13.30839 -13.03967 -12.56621 -12.41467 -12.22079 -12.06001 -11.92251 -11.70837 -11.60195 -11.52908 -11.43641 -11.42369 -11.36158 -11.33241 -11.18190 -11.04605 -10.86659 -10.84046 -10.66264 -10.60673 -9.78449 -9.65760 -9.32962 -9.13790 -8.46472 -8.01927 -7.68339 -6.90632 -4.51872 1.02576 2.21552 2.65800 3.00530 3.02641 3.09240 3.42397 3.83836 3.88645 4.24912 4.45443 4.49185 4.70077 4.82936 4.90537 4.98656 5.05806 5.15161 5.23699 5.27689 5.36298 5.39577 5.43383 5.46233 5.54111 5.59540 5.73027 5.82621 5.85340 5.89608 5.98515 6.03161 6.06402 6.14068 6.20128 6.25890 6.67299 6.77757 6.84361 6.87348 6.89236 7.04669 7.19598 7.25029 7.40150 7.74237 7.81889 7.95985 8.41447 8.68585 8.73419 10.05189 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.002877 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.868722 B = 9729.296036 C =10801.523132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.079 3.921 4 H 0.083 0.917 5 C -0.190 4.190 6 N -0.529 5.529 7 C 0.009 3.991 8 C 0.049 3.951 9 C 0.122 3.878 10 N -1.122 6.122 11 S 2.691 3.309 12 O -0.972 6.972 13 O -0.976 6.976 14 C -0.631 4.631 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.117 4.117 18 C 0.092 3.908 19 C -0.462 4.462 20 H 0.082 0.918 21 C 0.075 3.925 22 N -0.794 5.794 23 Si 0.912 3.088 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.124 4.124 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.412 0.588 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.124 0.876 47 H 0.284 0.716 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 -14.301 8.988 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.029 4.029 4 H 0.102 0.898 5 C -0.248 4.248 6 N -0.252 5.252 7 C -0.139 4.139 8 C -0.081 4.081 9 C -0.005 4.005 10 N -0.881 5.881 11 S 2.787 3.213 12 O -0.963 6.963 13 O -0.966 6.966 14 C -0.723 4.723 15 C -0.168 4.168 16 C -0.140 4.140 17 C -0.137 4.137 18 C 0.088 3.912 19 C -0.491 4.491 20 H 0.100 0.900 21 C -0.143 4.143 22 N -0.419 5.419 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.146 4.146 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.245 0.755 44 H 0.124 0.876 45 H 0.116 0.884 46 H 0.142 0.858 47 H 0.095 0.905 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.002 -13.997 8.086 18.502 hybrid contribution -0.355 0.600 0.838 1.090 sum 8.647 -13.396 8.924 18.272 Atomic orbital electron populations 1.21681 0.94963 1.00856 1.02876 1.21614 0.97041 0.95014 1.01729 1.21794 0.93104 0.95648 0.92372 0.89848 1.22499 0.97812 1.02191 1.02336 1.62104 1.58996 1.01594 1.02555 1.22608 0.97364 1.00020 0.93922 1.22262 0.98343 0.88375 0.99083 1.21198 1.00837 0.79458 0.99003 1.55541 1.80473 1.19804 1.32232 1.01585 0.75106 0.72276 0.72326 1.93540 1.82409 1.36744 1.83587 1.93504 1.77691 1.73217 1.52152 1.29702 1.22734 1.06672 1.13184 1.20082 0.95218 0.99319 1.02163 1.20809 0.93848 0.98778 1.00566 1.21632 0.99918 0.92981 0.99161 1.17671 0.90556 0.91931 0.91021 1.19573 1.03529 1.16045 1.09948 0.89994 1.25933 0.98613 0.95403 0.94368 1.69770 1.24136 1.37191 1.10818 0.86292 0.79313 0.80356 0.80393 1.18837 1.20256 1.18701 1.20745 0.94119 0.97108 1.02602 0.91205 0.93549 0.93088 0.91775 0.91986 0.92174 0.92412 0.92110 0.90932 0.90686 0.95108 0.90086 0.93918 0.90465 0.90353 0.75484 0.87625 0.88378 0.85797 0.90502 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.80 37.16 0.36 -0.84 16 2 C -0.12 -0.86 5.22 -26.73 -0.14 -1.00 16 3 C 0.08 0.64 2.34 -67.71 -0.16 0.48 16 4 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 5 C -0.19 -1.38 8.50 37.16 0.32 -1.06 16 6 N -0.53 -5.07 4.20 -234.89 -0.99 -6.05 16 7 C 0.01 0.08 8.63 60.06 0.52 0.60 16 8 C 0.05 0.49 4.54 -3.82 -0.02 0.47 16 9 C 0.12 1.54 6.15 -4.04 -0.02 1.51 16 10 N -1.12 -15.59 6.00 -10.62 -0.06 -15.65 16 11 S 2.69 50.15 5.74 -107.50 -0.62 49.53 16 12 O -0.97 -20.50 17.27 -57.18 -0.99 -21.49 16 13 O -0.98 -19.83 16.73 -57.18 -0.96 -20.79 16 14 C -0.63 -13.73 5.94 -39.66 -0.24 -13.97 16 15 C -0.15 -3.16 9.53 -39.29 -0.37 -3.54 16 16 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 17 C -0.12 -2.91 8.70 -38.88 -0.34 -3.25 16 18 C 0.09 2.37 5.57 -106.83 -0.60 1.78 16 19 C -0.46 -11.87 9.05 -37.74 -0.34 -12.21 16 20 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 21 C 0.08 1.82 5.14 -17.34 -0.09 1.74 16 22 N -0.79 -19.90 10.97 55.55 0.61 -19.29 16 23 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 26 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 27 C -0.12 -2.99 9.26 -38.87 -0.36 -3.35 16 28 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.47 6.17 -51.93 -0.32 0.15 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.44 6.39 -51.93 -0.33 0.11 16 34 H 0.06 0.44 6.75 -51.93 -0.35 0.09 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.59 6.22 -51.92 -0.32 0.26 16 37 H 0.07 0.73 6.30 -51.93 -0.33 0.40 16 38 H 0.03 0.26 6.28 -51.93 -0.33 -0.07 16 39 H 0.08 0.76 8.00 -51.93 -0.42 0.35 16 40 H 0.04 0.41 6.94 -51.93 -0.36 0.05 16 41 H 0.08 1.00 6.08 -51.93 -0.32 0.68 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.41 4.69 8.65 -34.47 -0.30 4.39 16 44 H 0.11 2.05 7.59 -52.49 -0.40 1.65 16 45 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 46 H 0.12 3.13 6.18 -52.48 -0.32 2.81 16 47 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 48 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -30.30 390.13 -11.42 -41.72 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.40 Total: 8.80 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: -1.87 Total: -35.74 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: -0.44 Total: -40.99 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.94 Total: -42.28 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 50.15 SS G_CDS: -0.62 Total: 49.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.30 -11.42 -41.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619482039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.765 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds