Wall clock time and date at job start Sat Apr 11 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47392 * 2 1 4 4 H 1.09000 * 109.47282 * 55.00185 * 3 2 1 5 5 C 1.52999 * 109.47535 * 174.99990 * 3 2 1 6 6 N 1.46903 * 109.46946 * 295.00252 * 3 2 1 7 7 C 1.46896 * 110.99961 * 298.94943 * 6 3 2 8 8 C 1.46900 * 110.99889 * 175.00059 * 6 3 2 9 9 C 1.52999 * 109.47133 * 189.99710 * 8 6 3 10 10 N 1.46496 * 109.47393 * 179.97438 * 9 8 6 11 11 S 1.65597 * 120.00464 * 165.00168 * 10 9 8 12 12 O 1.42096 * 106.40808 * 178.53993 * 11 10 9 13 13 O 1.42098 * 106.40131 * 311.46084 * 11 10 9 14 14 C 1.76201 * 107.21733 * 64.99948 * 11 10 9 15 15 C 1.38660 * 119.87441 * 269.72577 * 14 11 10 16 16 C 1.38617 * 120.49928 * 179.72118 * 15 14 11 17 17 C 1.37634 * 120.24606 * 0.55713 * 16 15 14 18 18 C 1.40694 * 119.74891 * 359.72381 * 17 16 15 19 19 C 1.41396 * 120.24872 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00057 * 155.24659 * 19 18 17 21 21 C 1.39950 * 119.99734 * 335.25510 * 19 18 17 22 22 N 1.30820 * 120.00076 * 342.24615 * 21 19 18 23 23 Si 1.86795 * 119.99829 * 162.25041 * 21 19 18 24 24 H 1.48503 * 109.47361 * 59.99694 * 23 21 19 25 25 H 1.48498 * 109.47000 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47364 * 299.99866 * 23 21 19 27 27 C 1.37597 * 119.87812 * 90.00391 * 14 11 10 28 28 H 1.08992 * 109.47112 * 59.99983 * 1 2 3 29 29 H 1.08996 * 109.47441 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46620 * 299.99969 * 1 2 3 31 31 H 1.08997 * 109.47303 * 239.99752 * 2 1 3 32 32 H 1.09000 * 109.47309 * 120.00214 * 2 1 3 33 33 H 1.09000 * 109.46676 * 59.99824 * 5 3 2 34 34 H 1.08996 * 109.47553 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47265 * 300.00592 * 5 3 2 36 36 H 1.09008 * 109.47151 * 59.99944 * 7 6 3 37 37 H 1.09002 * 109.47555 * 180.02562 * 7 6 3 38 38 H 1.09004 * 109.47470 * 300.00461 * 7 6 3 39 39 H 1.08999 * 109.47189 * 309.99494 * 8 6 3 40 40 H 1.09001 * 109.47304 * 69.99690 * 8 6 3 41 41 H 1.08998 * 109.47427 * 299.99991 * 9 8 6 42 42 H 1.09001 * 109.47041 * 59.99819 * 9 8 6 43 43 H 0.97005 * 119.99799 * 344.99986 * 10 9 8 44 44 H 1.07995 * 119.74934 * 0.02562 * 15 14 11 45 45 H 1.08000 * 119.87512 * 180.26701 * 16 15 14 46 46 H 1.08003 * 120.12805 * 179.74706 * 17 16 15 47 47 H 0.96990 * 120.00039 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.12301 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 7 1.6514 2.0992 -1.2552 7 6 2.2407 1.4131 -2.4128 8 6 2.0209 3.5209 -1.2418 9 6 1.3865 4.2241 -2.4435 10 7 1.7544 5.6420 -2.4299 11 16 1.5311 6.5686 -3.7841 12 8 1.9464 7.8841 -3.4433 13 8 2.0849 5.8351 -4.8678 14 6 -0.2043 6.6547 -4.0767 15 6 -0.8169 5.7062 -4.8814 16 6 -2.1822 5.7583 -5.1156 17 6 -2.9432 6.7613 -4.5596 18 6 -2.3314 7.7326 -3.7462 19 6 -3.1032 8.7673 -3.1692 20 1 -2.7641 9.2553 -2.2673 21 6 -4.3066 9.1589 -3.7666 22 7 -4.5544 8.8375 -5.0103 23 14 -5.5589 10.1407 -2.7883 24 1 -4.9472 11.4183 -2.3423 25 1 -6.7387 10.4290 -3.6428 26 1 -5.9860 9.3559 -1.6022 27 6 -0.9455 7.6664 -3.5106 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.9994 0.9052 -0.7161 34 1 3.9283 2.4719 0.1253 35 1 3.8533 0.9569 1.0571 36 1 1.8948 0.3796 -2.4374 37 1 1.9373 1.9200 -3.3288 38 1 3.3275 1.4306 -2.3310 39 1 1.6624 3.9808 -0.3209 40 1 3.1054 3.6150 -1.2967 41 1 1.7449 3.7642 -3.3645 42 1 0.3019 4.1300 -2.3886 43 1 2.1289 6.0382 -1.6275 44 1 -0.2268 4.9180 -5.3250 45 1 -2.6496 5.0117 -5.7406 46 1 -4.0061 6.8024 -4.7467 47 1 -5.3883 9.1093 -5.4245 48 1 -0.4655 8.4065 -2.8875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619482039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:07 Heat of formation + Delta-G solvation = -82.518424 kcal Electronic energy + Delta-G solvation = -27722.148513 eV Core-core repulsion = 23902.527763 eV Total energy + Delta-G solvation = -3819.620750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.86998 -39.43439 -38.27713 -36.92245 -36.55549 -35.65791 -33.69546 -31.90734 -31.58021 -30.58919 -29.19322 -27.34306 -26.76981 -24.59450 -23.67020 -22.85501 -22.58113 -20.75083 -20.30774 -19.63184 -18.46992 -17.74559 -17.65643 -16.93108 -16.81892 -16.52582 -16.24297 -15.87674 -15.48211 -15.20663 -15.05226 -14.97434 -14.53918 -14.33089 -14.27040 -13.85181 -13.71671 -13.39341 -13.26202 -13.18353 -13.06509 -13.04416 -12.91638 -12.86030 -12.75121 -12.73344 -12.56005 -12.25366 -12.20339 -12.05246 -11.95891 -11.56763 -11.53058 -11.38122 -11.27876 -11.12848 -10.42200 -9.83998 -9.54901 -9.16710 -8.72401 -6.44558 -0.50081 0.41748 0.85741 1.37550 1.47185 1.50767 2.09460 2.18523 2.55530 2.78297 3.04851 3.48860 3.53295 3.84137 3.92068 4.11831 4.20828 4.31126 4.34657 4.44585 4.47025 4.50649 4.57026 4.58873 4.65040 4.77533 4.84401 4.85352 4.91193 4.95732 4.98118 5.05753 5.08997 5.11786 5.19900 5.21463 5.24444 5.31173 5.42299 5.44312 5.57361 5.59517 5.89638 5.94438 6.06854 6.11357 6.18939 6.21360 6.53187 6.80534 6.85477 8.25818 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.002877 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.868722 B = 9729.296036 C =10801.523132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.079 3.921 4 H 0.082 0.918 5 C -0.185 4.185 6 N -0.539 5.539 7 C 0.008 3.992 8 C 0.055 3.945 9 C 0.117 3.883 10 N -1.104 6.104 11 S 2.723 3.277 12 O -0.996 6.996 13 O -0.987 6.987 14 C -0.638 4.638 15 C -0.146 4.146 16 C -0.123 4.123 17 C -0.140 4.140 18 C 0.062 3.938 19 C -0.499 4.499 20 H 0.081 0.919 21 C 0.036 3.964 22 N -0.825 5.825 23 Si 0.985 3.015 24 H -0.261 1.261 25 H -0.267 1.267 26 H -0.257 1.257 27 C -0.145 4.145 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.427 0.573 44 H 0.132 0.868 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.292 0.708 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.849 -15.528 9.994 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.029 4.029 4 H 0.100 0.900 5 C -0.244 4.244 6 N -0.264 5.264 7 C -0.140 4.140 8 C -0.075 4.075 9 C -0.009 4.009 10 N -0.867 5.867 11 S 2.815 3.185 12 O -0.986 6.986 13 O -0.977 6.977 14 C -0.727 4.727 15 C -0.166 4.166 16 C -0.142 4.142 17 C -0.160 4.160 18 C 0.059 3.941 19 C -0.529 4.529 20 H 0.099 0.901 21 C -0.180 4.180 22 N -0.451 5.451 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.191 1.191 26 H -0.182 1.182 27 C -0.166 4.166 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.263 0.737 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.130 0.870 47 H 0.102 0.898 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.763 -15.228 9.087 20.243 hybrid contribution -0.485 0.849 0.510 1.103 sum 9.277 -14.379 9.597 19.619 Atomic orbital electron populations 1.21651 0.95709 1.00987 1.01855 1.21600 0.96280 0.94706 1.02456 1.21834 0.93801 0.95823 0.91487 0.90033 1.22449 0.96913 1.02116 1.02892 1.62086 1.59533 1.01340 1.03409 1.22621 0.97759 1.00297 0.93316 1.22177 0.98643 0.88692 0.97979 1.21351 1.00584 0.78471 1.00515 1.55100 1.79823 1.20048 1.31680 1.00655 0.73297 0.71778 0.72729 1.93504 1.82180 1.38770 1.84141 1.93488 1.77129 1.73399 1.53653 1.30232 1.24810 1.05584 1.12053 1.20461 0.95209 0.99588 1.01375 1.21143 0.94338 0.98551 1.00137 1.21640 0.99737 0.94137 1.00485 1.18039 0.91639 0.92595 0.91825 1.19851 1.05230 1.17118 1.10654 0.90115 1.26784 0.99889 0.96197 0.95103 1.69815 1.24970 1.38183 1.12106 0.85203 0.76716 0.78667 0.78881 1.18506 1.19103 1.18151 1.20833 0.93898 0.98235 1.03641 0.92926 0.92882 0.93342 0.91569 0.90686 0.92197 0.92731 0.91065 0.90135 0.91635 0.94464 0.89328 0.92943 0.90417 0.91316 0.73671 0.85069 0.85570 0.86974 0.89754 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.80 71.98 0.71 -1.48 16 2 C -0.11 -1.44 5.22 30.59 0.16 -1.28 16 3 C 0.08 1.12 2.34 44.91 0.11 1.22 16 4 H 0.08 1.20 8.03 -2.39 -0.02 1.18 16 5 C -0.19 -2.24 8.50 71.98 0.61 -1.63 16 6 N -0.54 -9.41 4.20 -897.04 -3.77 -13.19 16 7 C 0.01 0.13 8.63 127.69 1.10 1.23 16 8 C 0.05 1.00 4.54 86.30 0.39 1.39 16 9 C 0.12 2.77 6.15 86.38 0.53 3.31 16 10 N -1.10 -28.90 6.00 -187.50 -1.12 -30.03 16 11 S 2.72 98.70 5.74 -56.49 -0.32 98.37 16 12 O -1.00 -41.37 17.27 -128.00 -2.21 -43.58 16 13 O -0.99 -38.50 16.73 -128.00 -2.14 -40.64 16 14 C -0.64 -27.68 5.94 22.22 0.13 -27.55 16 15 C -0.15 -6.17 9.53 22.46 0.21 -5.95 16 16 C -0.12 -5.47 10.02 22.22 0.22 -5.25 16 17 C -0.14 -7.16 8.70 22.73 0.20 -6.96 16 18 C 0.06 3.33 5.57 -21.29 -0.12 3.21 16 19 C -0.50 -26.58 9.05 23.46 0.21 -26.37 16 20 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 21 C 0.04 1.76 5.14 85.26 0.44 2.20 16 22 N -0.83 -42.28 10.97 21.83 0.24 -42.04 16 23 Si 0.99 37.35 29.59 68.60 2.03 39.38 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 25 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 26 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 27 C -0.15 -7.15 9.26 22.73 0.21 -6.94 16 28 H 0.05 0.97 7.75 -2.39 -0.02 0.96 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.83 6.17 -2.39 -0.01 0.81 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.74 6.39 -2.39 -0.02 0.72 16 34 H 0.05 0.70 6.75 -2.39 -0.02 0.68 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 1.16 6.22 -2.38 -0.01 1.15 16 37 H 0.06 1.18 6.30 -2.39 -0.02 1.17 16 38 H 0.04 0.55 6.28 -2.39 -0.01 0.54 16 39 H 0.09 1.49 8.00 -2.39 -0.02 1.47 16 40 H 0.05 0.87 6.94 -2.39 -0.02 0.85 16 41 H 0.08 1.87 6.08 -2.39 -0.01 1.85 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.43 8.89 8.65 -96.74 -0.84 8.05 16 44 H 0.13 4.83 7.59 -2.91 -0.02 4.81 16 45 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 46 H 0.11 5.89 6.18 -2.91 -0.02 5.87 16 47 H 0.29 13.47 8.30 -92.72 -0.77 12.70 16 48 H 0.11 5.27 7.60 -2.91 -0.02 5.25 16 Total: -1.00 -65.51 390.13 -2.06 -67.57 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.13 Total: 35.01 kcal Atomic # 6 Polarization: -75.98 SS G_CDS: 5.12 Total: -70.86 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -4.66 Total: -85.25 kcal Atomic # 8 Polarization: -79.87 SS G_CDS: -4.35 Total: -84.23 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 16 Polarization: 98.70 SS G_CDS: -0.32 Total: 98.37 kcal Total: -65.51 -2.06 -67.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619482039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.951 kcal (2) G-P(sol) polarization free energy of solvation -65.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds