Wall clock time and date at job start Sat Apr 11 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 H 1.08996 * 109.47282 * 304.45235 * 3 2 1 5 5 C 1.53004 * 109.46687 * 64.44897 * 3 2 1 6 6 N 1.46902 * 109.47101 * 184.44608 * 3 2 1 7 7 C 1.46902 * 110.99736 * 61.26242 * 6 3 2 8 8 C 1.46899 * 111.00131 * 185.21817 * 6 3 2 9 9 C 1.52991 * 109.47371 * 170.00125 * 8 6 3 10 10 N 1.46499 * 109.47364 * 179.97438 * 9 8 6 11 11 S 1.65603 * 120.00034 * 162.20396 * 10 9 8 12 12 O 1.42098 * 106.40040 * 312.39772 * 11 10 9 13 13 O 1.42098 * 106.40194 * 179.48106 * 11 10 9 14 14 C 1.76202 * 107.21945 * 65.94111 * 11 10 9 15 15 C 1.37637 * 120.12822 * 112.13939 * 14 11 10 16 16 C 1.38614 * 120.24888 * 180.32129 * 15 14 11 17 17 C 1.38652 * 120.49697 * 359.67359 * 16 15 14 18 18 C 1.37596 * 120.25119 * 359.97438 * 17 16 15 19 19 C 1.40696 * 120.12754 * 291.83714 * 14 11 10 20 20 C 1.41402 * 120.24389 * 359.97438 * 19 14 11 21 21 H 1.08002 * 119.99511 * 322.97431 * 20 19 14 22 22 C 1.39943 * 120.00248 * 142.97483 * 20 19 14 23 23 N 1.30829 * 119.99588 * 351.02059 * 22 20 19 24 24 Si 1.86797 * 120.00296 * 171.02422 * 22 20 19 25 25 H 1.48500 * 109.47364 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47090 * 300.00147 * 24 22 20 27 27 H 1.48507 * 109.46990 * 59.99921 * 24 22 20 28 28 H 1.08999 * 109.46737 * 184.65304 * 1 2 3 29 29 H 1.08996 * 109.46984 * 304.64985 * 1 2 3 30 30 H 1.08996 * 109.47220 * 64.65775 * 1 2 3 31 31 H 1.09003 * 109.46522 * 240.00089 * 2 1 3 32 32 H 1.09001 * 109.47409 * 120.00809 * 2 1 3 33 33 H 1.08999 * 109.46852 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47389 * 299.99630 * 5 3 2 35 35 H 1.08996 * 109.46984 * 60.00155 * 5 3 2 36 36 H 1.09003 * 109.47021 * 188.10537 * 7 6 3 37 37 H 1.08997 * 109.47147 * 308.10754 * 7 6 3 38 38 H 1.09001 * 109.46884 * 68.11250 * 7 6 3 39 39 H 1.09007 * 109.47209 * 49.99719 * 8 6 3 40 40 H 1.09002 * 109.46923 * 290.00422 * 8 6 3 41 41 H 1.09007 * 109.47285 * 59.99640 * 9 8 6 42 42 H 1.09002 * 109.47339 * 300.00042 * 9 8 6 43 43 H 0.96996 * 119.99712 * 342.20183 * 10 9 8 44 44 H 1.08003 * 119.87953 * 0.02562 * 15 14 11 45 45 H 1.07997 * 119.74853 * 179.69784 * 16 15 14 46 46 H 1.08010 * 119.87709 * 180.02562 * 17 16 15 47 47 H 1.08009 * 120.12802 * 180.02562 * 18 17 16 48 48 H 0.96998 * 120.00203 * 354.25276 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6130 1.9788 -0.8474 5 6 1.6234 2.1306 1.3015 6 7 3.5051 1.4438 -0.1074 7 6 3.9416 0.8162 -1.3618 8 6 4.0406 2.8064 0.0138 9 6 5.5634 2.7459 0.1477 10 7 6.0975 4.1048 0.2680 11 16 7.6257 4.3445 0.8590 12 8 7.7278 3.5582 2.0382 13 8 7.8481 5.7478 0.8391 14 6 8.7503 3.6460 -0.3038 15 6 9.5890 4.4612 -1.0293 16 6 10.4699 3.9149 -1.9495 17 6 10.5219 2.5433 -2.1453 18 6 9.6979 1.7086 -1.4259 19 6 8.7989 2.2522 -0.4896 20 6 7.9469 1.4043 0.2551 21 1 7.7212 1.6357 1.2856 22 6 7.3962 0.2653 -0.3431 23 7 7.5232 0.0769 -1.6315 24 14 6.4796 -0.9859 0.6979 25 1 5.9966 -2.0915 -0.1678 26 1 7.3924 -1.5310 1.7346 27 1 5.3205 -0.3296 1.3546 28 1 -0.3633 -1.0243 0.0834 29 1 -0.3633 0.5843 0.8454 30 1 -0.3633 0.4398 -0.9287 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5140 0.8899 33 1 1.9871 3.1581 1.3017 34 1 0.5363 2.1296 1.3812 35 1 2.0504 1.5943 2.1489 36 1 5.0253 0.7001 -1.3521 37 1 3.4721 -0.1624 -1.4610 38 1 3.6512 1.4455 -2.2031 39 1 3.6170 3.2862 0.8962 40 1 3.7764 3.3808 -0.8741 41 1 5.9870 2.2661 -0.7346 42 1 5.8276 2.1714 1.0356 43 1 5.5559 4.8640 0.0013 44 1 9.5572 5.5310 -0.8846 45 1 11.1209 4.5625 -2.5180 46 1 11.2125 2.1282 -2.8647 47 1 9.7404 0.6404 -1.5797 48 1 7.9251 0.7647 -2.1849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:17 Heat of formation + Delta-G solvation = -57.973218 kcal Electronic energy + Delta-G solvation = -29647.855190 eV Core-core repulsion = 25829.298801 eV Total energy + Delta-G solvation = -3818.556390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.63485 -37.95344 -36.39469 -35.23399 -34.90870 -34.01202 -32.99465 -30.26592 -29.58508 -29.43090 -28.09852 -25.53483 -24.83244 -23.93418 -21.98659 -21.20045 -21.09008 -19.72952 -18.67379 -18.20192 -16.90489 -16.37187 -16.09214 -15.32834 -15.06057 -14.86603 -14.73588 -14.55323 -14.21228 -13.95098 -13.70411 -13.48034 -13.20425 -13.05597 -12.74384 -12.51335 -12.35868 -12.27679 -11.80351 -11.65041 -11.56471 -11.42126 -11.32439 -11.26722 -11.20669 -11.15972 -10.94535 -10.71580 -10.66979 -10.61100 -10.51330 -10.34092 -10.25875 -9.76136 -9.38916 -9.20484 -8.63069 -8.28928 -8.07899 -7.74903 -7.34640 -4.85526 1.47928 2.15687 2.60649 3.16973 3.27845 3.38378 3.80032 3.93863 4.22052 4.38531 4.64361 4.84062 4.90823 5.11896 5.22204 5.29837 5.34395 5.41795 5.48400 5.52235 5.54113 5.68627 5.80900 5.84302 5.86514 5.90175 5.97694 6.00697 6.01135 6.05264 6.21195 6.23808 6.29510 6.36961 6.48696 6.56899 6.58425 6.79393 6.83254 7.12058 7.25875 7.30483 7.34126 7.35867 7.52603 7.63995 7.68043 7.83311 7.97869 8.36707 8.59956 9.88465 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.004783 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.101087 B = 5852.617779 C = 6982.510729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.081 3.919 4 H 0.036 0.964 5 C -0.152 4.152 6 N -0.529 5.529 7 C 0.006 3.994 8 C 0.041 3.959 9 C 0.126 3.874 10 N -1.121 6.121 11 S 2.711 3.289 12 O -0.971 6.971 13 O -1.000 7.000 14 C -0.772 4.772 15 C 0.007 3.993 16 C -0.253 4.253 17 C -0.059 4.059 18 C -0.204 4.204 19 C 0.170 3.830 20 C -0.534 4.534 21 H 0.118 0.882 22 C 0.048 3.952 23 N -0.799 5.799 24 Si 1.038 2.962 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.239 1.239 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.020 0.980 39 H 0.082 0.918 40 H 0.031 0.969 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.403 0.597 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 -0.071 -0.144 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.027 4.027 4 H 0.054 0.946 5 C -0.209 4.209 6 N -0.254 5.254 7 C -0.142 4.142 8 C -0.088 4.088 9 C 0.000 4.000 10 N -0.878 5.878 11 S 2.807 3.193 12 O -0.961 6.961 13 O -0.990 6.990 14 C -0.867 4.867 15 C -0.013 4.013 16 C -0.274 4.274 17 C -0.078 4.078 18 C -0.224 4.224 19 C 0.166 3.834 20 C -0.562 4.562 21 H 0.135 0.865 22 C -0.174 4.174 23 N -0.423 5.423 24 Si 0.860 3.140 25 H -0.198 1.198 26 H -0.203 1.203 27 H -0.163 1.163 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.039 0.961 39 H 0.100 0.900 40 H 0.050 0.950 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.235 0.765 44 H 0.129 0.871 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.131 0.869 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.670 -1.574 0.999 11.818 hybrid contribution 0.750 1.909 -1.767 2.707 sum -10.921 0.334 -0.768 10.953 Atomic orbital electron populations 1.21815 0.95915 1.01535 1.01623 1.21647 0.95088 0.96124 1.03069 1.21624 0.87643 0.96253 0.97217 0.94631 1.22011 1.00647 1.00565 0.97673 1.61924 1.08631 1.18743 1.36127 1.22729 1.03923 0.98743 0.88768 1.22492 0.96128 0.89402 1.00814 1.21709 0.91765 0.81677 1.04854 1.55486 1.33842 1.13709 1.84756 1.00749 0.72393 0.71886 0.74262 1.93479 1.85874 1.70966 1.45741 1.93453 1.85567 1.31908 1.88120 1.29988 1.24291 1.03419 1.28967 1.20352 0.91980 0.97530 0.91394 1.20529 1.06281 0.94885 1.05669 1.20895 0.96500 0.93850 0.96565 1.21456 0.99397 0.98800 1.02737 1.17121 0.88458 0.89138 0.88726 1.21519 1.24484 1.07983 1.02166 0.86452 1.27013 0.95555 0.97935 0.96860 1.70504 1.30284 1.35704 1.05836 0.84070 0.78176 0.75886 0.75889 1.19761 1.20312 1.16275 0.92764 0.92441 0.93141 0.91563 0.90960 0.92418 0.92282 0.91501 0.88691 0.91292 0.96097 0.90024 0.95043 0.90119 0.88629 0.76477 0.87146 0.88350 0.88476 0.86866 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.76 37.16 0.36 -0.96 16 2 C -0.12 -1.34 5.35 -26.73 -0.14 -1.48 16 3 C 0.08 0.98 2.15 -67.71 -0.15 0.83 16 4 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 5 C -0.15 -1.64 8.57 37.16 0.32 -1.32 16 6 N -0.53 -7.85 4.63 -234.89 -1.09 -8.94 16 7 C 0.01 0.09 8.91 60.07 0.53 0.63 16 8 C 0.04 0.61 4.84 -3.83 -0.02 0.59 16 9 C 0.13 2.31 4.18 -4.05 -0.02 2.29 16 10 N -1.12 -20.13 5.99 -10.61 -0.06 -20.19 16 11 S 2.71 58.41 5.44 -107.50 -0.58 57.82 16 12 O -0.97 -23.29 14.92 -57.17 -0.85 -24.15 16 13 O -1.00 -22.44 16.97 -57.17 -0.97 -23.41 16 14 C -0.77 -18.00 5.96 -38.87 -0.23 -18.23 16 15 C 0.01 0.16 9.53 -39.66 -0.38 -0.22 16 16 C -0.25 -5.35 10.05 -39.29 -0.39 -5.74 16 17 C -0.06 -1.27 10.02 -39.66 -0.40 -1.66 16 18 C -0.20 -4.80 7.66 -38.88 -0.30 -5.10 16 19 C 0.17 4.15 5.22 -106.83 -0.56 3.59 16 20 C -0.53 -12.76 4.67 -37.74 -0.18 -12.93 16 21 H 0.12 2.92 4.70 -52.49 -0.25 2.67 16 22 C 0.05 1.08 3.13 -17.34 -0.05 1.03 16 23 N -0.80 -18.45 12.17 55.55 0.68 -17.77 16 24 Si 1.04 20.36 28.49 -169.99 -4.84 15.52 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.24 -4.41 7.11 56.52 0.40 -4.00 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 6.34 -51.93 -0.33 0.14 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.75 6.05 -51.93 -0.31 0.44 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.62 6.12 -51.93 -0.32 0.30 16 34 H 0.06 0.53 6.45 -51.93 -0.33 0.20 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.71 4.13 -51.93 -0.21 1.50 16 37 H 0.07 0.97 5.87 -51.93 -0.30 0.67 16 38 H 0.02 0.30 8.09 -51.93 -0.42 -0.12 16 39 H 0.08 1.12 5.67 -51.93 -0.29 0.82 16 40 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 41 H 0.08 1.63 4.62 -51.93 -0.24 1.39 16 42 H 0.10 1.93 5.76 -51.93 -0.30 1.63 16 43 H 0.40 5.98 8.67 -34.47 -0.30 5.68 16 44 H 0.11 2.26 7.33 -52.48 -0.38 1.88 16 45 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 47 H 0.11 2.68 6.70 -52.48 -0.35 2.33 16 48 H 0.30 7.14 5.82 -40.82 -0.24 6.91 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -27.68 367.17 -10.55 -38.23 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -6.76 Total: 16.03 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: -1.60 Total: -38.68 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.47 Total: -46.91 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -1.82 Total: -47.55 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.84 Total: 15.52 kcal Atomic # 16 Polarization: 58.41 SS G_CDS: -0.58 Total: 57.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.68 -10.55 -38.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.742 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds