Wall clock time and date at job start Sat Apr 11 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 H 1.08996 * 109.47282 * 304.45235 * 3 2 1 5 5 C 1.53004 * 109.46687 * 64.44897 * 3 2 1 6 6 N 1.46902 * 109.47101 * 184.44608 * 3 2 1 7 7 C 1.46902 * 110.99736 * 61.26242 * 6 3 2 8 8 C 1.46899 * 111.00131 * 185.21817 * 6 3 2 9 9 C 1.52991 * 109.47371 * 170.00125 * 8 6 3 10 10 N 1.46499 * 109.47364 * 179.97438 * 9 8 6 11 11 S 1.65603 * 120.00034 * 162.20396 * 10 9 8 12 12 O 1.42098 * 106.40040 * 312.39772 * 11 10 9 13 13 O 1.42098 * 106.40194 * 179.48106 * 11 10 9 14 14 C 1.76202 * 107.21945 * 65.94111 * 11 10 9 15 15 C 1.37637 * 120.12822 * 112.13939 * 14 11 10 16 16 C 1.38614 * 120.24888 * 180.32129 * 15 14 11 17 17 C 1.38652 * 120.49697 * 359.67359 * 16 15 14 18 18 C 1.37596 * 120.25119 * 359.97438 * 17 16 15 19 19 C 1.40696 * 120.12754 * 291.83714 * 14 11 10 20 20 C 1.41402 * 120.24389 * 359.97438 * 19 14 11 21 21 H 1.08002 * 119.99511 * 322.97431 * 20 19 14 22 22 C 1.39943 * 120.00248 * 142.97483 * 20 19 14 23 23 N 1.30829 * 119.99588 * 351.02059 * 22 20 19 24 24 Si 1.86797 * 120.00296 * 171.02422 * 22 20 19 25 25 H 1.48500 * 109.47364 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47090 * 300.00147 * 24 22 20 27 27 H 1.48507 * 109.46990 * 59.99921 * 24 22 20 28 28 H 1.08999 * 109.46737 * 184.65304 * 1 2 3 29 29 H 1.08996 * 109.46984 * 304.64985 * 1 2 3 30 30 H 1.08996 * 109.47220 * 64.65775 * 1 2 3 31 31 H 1.09003 * 109.46522 * 240.00089 * 2 1 3 32 32 H 1.09001 * 109.47409 * 120.00809 * 2 1 3 33 33 H 1.08999 * 109.46852 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47389 * 299.99630 * 5 3 2 35 35 H 1.08996 * 109.46984 * 60.00155 * 5 3 2 36 36 H 1.09003 * 109.47021 * 188.10537 * 7 6 3 37 37 H 1.08997 * 109.47147 * 308.10754 * 7 6 3 38 38 H 1.09001 * 109.46884 * 68.11250 * 7 6 3 39 39 H 1.09007 * 109.47209 * 49.99719 * 8 6 3 40 40 H 1.09002 * 109.46923 * 290.00422 * 8 6 3 41 41 H 1.09007 * 109.47285 * 59.99640 * 9 8 6 42 42 H 1.09002 * 109.47339 * 300.00042 * 9 8 6 43 43 H 0.96996 * 119.99712 * 342.20183 * 10 9 8 44 44 H 1.08003 * 119.87953 * 0.02562 * 15 14 11 45 45 H 1.07997 * 119.74853 * 179.69784 * 16 15 14 46 46 H 1.08010 * 119.87709 * 180.02562 * 17 16 15 47 47 H 1.08009 * 120.12802 * 180.02562 * 18 17 16 48 48 H 0.96998 * 120.00203 * 354.25276 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6130 1.9788 -0.8474 5 6 1.6234 2.1306 1.3015 6 7 3.5051 1.4438 -0.1074 7 6 3.9416 0.8162 -1.3618 8 6 4.0406 2.8064 0.0138 9 6 5.5634 2.7459 0.1477 10 7 6.0975 4.1048 0.2680 11 16 7.6257 4.3445 0.8590 12 8 7.7278 3.5582 2.0382 13 8 7.8481 5.7478 0.8391 14 6 8.7503 3.6460 -0.3038 15 6 9.5890 4.4612 -1.0293 16 6 10.4699 3.9149 -1.9495 17 6 10.5219 2.5433 -2.1453 18 6 9.6979 1.7086 -1.4259 19 6 8.7989 2.2522 -0.4896 20 6 7.9469 1.4043 0.2551 21 1 7.7212 1.6357 1.2856 22 6 7.3962 0.2653 -0.3431 23 7 7.5232 0.0769 -1.6315 24 14 6.4796 -0.9859 0.6979 25 1 5.9966 -2.0915 -0.1678 26 1 7.3924 -1.5310 1.7346 27 1 5.3205 -0.3296 1.3546 28 1 -0.3633 -1.0243 0.0834 29 1 -0.3633 0.5843 0.8454 30 1 -0.3633 0.4398 -0.9287 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5140 0.8899 33 1 1.9871 3.1581 1.3017 34 1 0.5363 2.1296 1.3812 35 1 2.0504 1.5943 2.1489 36 1 5.0253 0.7001 -1.3521 37 1 3.4721 -0.1624 -1.4610 38 1 3.6512 1.4455 -2.2031 39 1 3.6170 3.2862 0.8962 40 1 3.7764 3.3808 -0.8741 41 1 5.9870 2.2661 -0.7346 42 1 5.8276 2.1714 1.0356 43 1 5.5559 4.8640 0.0013 44 1 9.5572 5.5310 -0.8846 45 1 11.1209 4.5625 -2.5180 46 1 11.2125 2.1282 -2.8647 47 1 9.7404 0.6404 -1.5797 48 1 7.9251 0.7647 -2.1849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:17 Heat of formation + Delta-G solvation = -76.513634 kcal Electronic energy + Delta-G solvation = -29648.659163 eV Core-core repulsion = 25829.298801 eV Total energy + Delta-G solvation = -3819.360362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.87003 -39.54701 -38.16458 -36.75911 -36.58369 -35.68583 -34.09981 -32.00681 -31.20536 -30.46473 -29.35023 -27.26453 -25.96224 -24.94959 -23.68666 -22.93139 -22.34199 -20.76247 -20.33293 -19.91118 -18.57201 -17.87185 -17.53258 -16.70138 -16.58127 -16.42933 -15.91569 -15.76051 -15.65108 -15.51590 -15.32751 -14.95056 -14.62193 -14.30722 -14.09181 -13.96154 -13.58408 -13.40029 -13.22747 -13.17442 -13.04862 -12.99150 -12.84795 -12.69999 -12.53605 -12.43398 -12.25623 -12.15306 -12.10797 -11.96722 -11.83136 -11.56057 -11.44672 -11.19522 -11.09702 -10.92389 -10.19207 -10.03083 -9.53289 -9.18774 -9.13315 -6.66117 -0.22369 0.39245 0.85274 1.54611 1.68063 1.81829 2.26705 2.32025 2.65527 2.91003 3.02858 3.35930 3.71208 3.94272 4.03285 4.07982 4.20911 4.22382 4.32634 4.44918 4.50031 4.53576 4.58702 4.60436 4.63013 4.74752 4.79230 4.80650 4.83060 4.99043 5.06924 5.08737 5.15816 5.19126 5.22701 5.31723 5.33506 5.37766 5.49186 5.51670 5.54359 5.59243 5.78824 5.88049 6.03304 6.13684 6.19380 6.25833 6.31621 6.59155 6.81816 8.08785 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.004783 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.101087 B = 5852.617779 C = 6982.510729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.080 3.920 4 H 0.042 0.958 5 C -0.149 4.149 6 N -0.542 5.542 7 C 0.009 3.991 8 C 0.047 3.953 9 C 0.129 3.871 10 N -1.106 6.106 11 S 2.728 3.272 12 O -0.998 6.998 13 O -1.009 7.009 14 C -0.791 4.791 15 C -0.008 4.008 16 C -0.251 4.251 17 C -0.057 4.057 18 C -0.227 4.227 19 C 0.150 3.850 20 C -0.547 4.547 21 H 0.103 0.897 22 C 0.037 3.963 23 N -0.806 5.806 24 Si 1.062 2.938 25 H -0.266 1.266 26 H -0.281 1.281 27 H -0.224 1.224 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.097 0.903 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.420 0.580 44 H 0.126 0.874 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.103 0.897 48 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 0.511 -0.656 12.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.028 4.028 4 H 0.060 0.940 5 C -0.206 4.206 6 N -0.267 5.267 7 C -0.139 4.139 8 C -0.082 4.082 9 C 0.003 3.997 10 N -0.867 5.867 11 S 2.823 3.177 12 O -0.988 6.988 13 O -0.999 6.999 14 C -0.884 4.884 15 C -0.028 4.028 16 C -0.271 4.271 17 C -0.076 4.076 18 C -0.247 4.247 19 C 0.145 3.855 20 C -0.575 4.575 21 H 0.120 0.880 22 C -0.182 4.182 23 N -0.430 5.430 24 Si 0.880 3.120 25 H -0.190 1.190 26 H -0.207 1.207 27 H -0.147 1.147 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.255 0.745 44 H 0.144 0.856 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.121 0.879 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.077 -0.970 0.473 13.122 hybrid contribution 1.239 1.800 -1.652 2.739 sum -11.838 0.829 -1.179 11.926 Atomic orbital electron populations 1.21772 0.94025 1.02302 1.02226 1.21646 0.96702 0.95220 1.02327 1.21741 0.85726 0.97228 0.98113 0.94019 1.22005 1.02011 1.00161 0.96465 1.61906 1.10594 1.18453 1.35787 1.22636 1.02300 0.99608 0.89379 1.22411 0.93573 0.90135 1.02119 1.21570 0.94131 0.81030 1.02956 1.55091 1.32739 1.14496 1.84385 1.00124 0.72778 0.71144 0.73636 1.93443 1.86518 1.71576 1.47263 1.93429 1.86052 1.32238 1.88212 1.30292 1.25365 1.03408 1.29340 1.20691 0.92085 0.98342 0.91642 1.20959 1.05845 0.95217 1.05070 1.21259 0.96042 0.94015 0.96244 1.21493 1.00510 0.98725 1.03942 1.17371 0.88931 0.89814 0.89384 1.21436 1.25412 1.09073 1.01557 0.87972 1.27669 0.95189 0.98426 0.96937 1.70562 1.31011 1.35392 1.06062 0.83806 0.78057 0.74985 0.75150 1.19022 1.20727 1.14693 0.92021 0.91638 0.92651 0.92174 0.91854 0.92355 0.90154 0.92458 0.91379 0.90280 0.95644 0.88458 0.93816 0.92007 0.90735 0.74497 0.85645 0.84983 0.85382 0.87886 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.76 71.98 0.70 -1.48 16 2 C -0.12 -2.44 5.35 30.59 0.16 -2.28 16 3 C 0.08 1.76 2.15 44.92 0.10 1.86 16 4 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 5 C -0.15 -2.87 8.57 71.98 0.62 -2.25 16 6 N -0.54 -15.44 4.63 -897.05 -4.15 -19.60 16 7 C 0.01 0.26 8.91 127.69 1.14 1.40 16 8 C 0.05 1.35 4.84 86.30 0.42 1.77 16 9 C 0.13 4.75 4.18 86.38 0.36 5.11 16 10 N -1.11 -39.30 5.99 -187.50 -1.12 -40.42 16 11 S 2.73 117.81 5.44 -56.49 -0.31 117.50 16 12 O -1.00 -48.78 14.92 -128.00 -1.91 -50.69 16 13 O -1.01 -44.58 16.97 -128.00 -2.17 -46.75 16 14 C -0.79 -37.00 5.96 22.73 0.14 -36.87 16 15 C -0.01 -0.34 9.53 22.22 0.21 -0.13 16 16 C -0.25 -10.08 10.05 22.46 0.23 -9.86 16 17 C -0.06 -2.36 10.02 22.22 0.22 -2.14 16 18 C -0.23 -10.76 7.66 22.73 0.17 -10.59 16 19 C 0.15 7.41 5.22 -21.29 -0.11 7.30 16 20 C -0.55 -26.87 4.67 23.46 0.11 -26.76 16 21 H 0.10 5.28 4.70 -2.91 -0.01 5.26 16 22 C 0.04 1.70 3.13 85.26 0.27 1.96 16 23 N -0.81 -38.02 12.17 21.83 0.27 -37.75 16 24 Si 1.06 41.48 28.49 68.60 1.95 43.43 16 25 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 26 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.22 -8.13 7.11 99.48 0.71 -7.43 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.88 6.34 -2.39 -0.02 0.86 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 1.27 6.05 -2.39 -0.01 1.26 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.10 6.12 -2.39 -0.01 1.09 16 34 H 0.08 1.20 6.45 -2.39 -0.02 1.18 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 2.47 4.13 -2.39 -0.01 2.46 16 37 H 0.08 2.17 5.87 -2.39 -0.01 2.16 16 38 H 0.03 0.72 8.09 -2.39 -0.02 0.70 16 39 H 0.10 2.49 5.67 -2.38 -0.01 2.47 16 40 H 0.04 1.15 8.08 -2.39 -0.02 1.13 16 41 H 0.06 2.54 4.62 -2.38 -0.01 2.53 16 42 H 0.07 3.07 5.76 -2.39 -0.01 3.05 16 43 H 0.42 11.92 8.67 -96.75 -0.84 11.08 16 44 H 0.13 4.95 7.33 -2.91 -0.02 4.93 16 45 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 46 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 47 H 0.10 5.00 6.70 -2.91 -0.02 4.98 16 48 H 0.29 14.22 5.82 -92.71 -0.54 13.68 16 Total: -1.00 -59.42 367.17 -2.33 -61.75 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: 0.38 Total: 45.48 kcal Atomic # 6 Polarization: -77.68 SS G_CDS: 4.73 Total: -72.95 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -5.01 Total: -97.77 kcal Atomic # 8 Polarization: -93.36 SS G_CDS: -4.08 Total: -97.44 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.95 Total: 43.43 kcal Atomic # 16 Polarization: 117.81 SS G_CDS: -0.31 Total: 117.50 kcal Total: -59.42 -2.33 -61.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.767 kcal (2) G-P(sol) polarization free energy of solvation -59.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds