Wall clock time and date at job start Sat Apr 11 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 H 1.08997 * 109.47104 * 305.00205 * 3 2 1 5 5 O 1.42901 * 109.46911 * 65.00127 * 3 2 1 6 6 C 1.53002 * 109.47084 * 185.00206 * 3 2 1 7 7 C 1.53008 * 109.46647 * 175.00050 * 6 3 2 8 8 C 1.53002 * 109.46647 * 180.02562 * 7 6 3 9 9 N 1.46506 * 109.47134 * 179.97438 * 8 7 6 10 10 C 1.34767 * 119.99993 * 179.97438 * 9 8 7 11 11 O 1.21590 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99895 * 180.02562 * 10 9 8 13 13 C 1.40132 * 120.00144 * 175.63330 * 12 10 9 14 14 C 1.38693 * 120.07536 * 34.59596 * 13 12 10 15 15 C 1.38206 * 120.02298 * 179.70087 * 14 13 12 16 16 C 1.38545 * 120.17086 * 0.60087 * 15 14 13 17 17 F 1.35092 * 119.92516 * 179.70002 * 16 15 14 18 18 C 1.38342 * 120.14905 * 359.67478 * 16 15 14 19 19 C 1.38734 * 119.97993 * 0.02658 * 18 16 15 20 20 O 1.35782 * 120.08876 * 180.02562 * 19 18 16 21 21 C 1.34805 * 117.00119 * 5.43081 * 20 19 18 22 22 H 1.08003 * 119.99906 * 354.95562 * 21 20 19 23 23 C 1.38635 * 120.00180 * 174.95678 * 21 20 19 24 24 N 1.31568 * 119.99980 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99849 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47335 * 59.99921 * 25 23 21 27 27 H 1.48506 * 109.47078 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47047 * 299.99505 * 25 23 21 29 29 H 1.08995 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47425 * 59.99527 * 1 2 3 31 31 H 1.09007 * 109.46832 * 299.99586 * 1 2 3 32 32 H 1.08999 * 109.47425 * 120.00473 * 2 1 3 33 33 H 1.09003 * 109.47189 * 240.00104 * 2 1 3 34 34 H 0.96700 * 113.99618 * 60.00339 * 5 3 2 35 35 H 1.08996 * 109.47327 * 294.99731 * 6 3 2 36 36 H 1.08996 * 109.46963 * 55.00596 * 6 3 2 37 37 H 1.08996 * 109.46997 * 299.99884 * 7 6 3 38 38 H 1.08996 * 109.46993 * 60.00565 * 7 6 3 39 39 H 1.08999 * 109.47094 * 300.00155 * 8 7 6 40 40 H 1.09007 * 109.47044 * 60.00105 * 8 7 6 41 41 H 0.97001 * 119.99371 * 0.02562 * 9 8 7 42 42 H 0.96998 * 119.99515 * 355.63042 * 12 10 9 43 43 H 1.07999 * 119.99051 * 359.97438 * 14 13 12 44 44 H 1.07993 * 119.91456 * 180.29579 * 15 14 13 45 45 H 1.08001 * 120.01191 * 180.02562 * 18 16 15 46 46 H 0.96995 * 120.00001 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 3.5649 1.4443 -0.1258 7 6 4.0645 2.8850 -0.2512 8 6 5.5893 2.8867 -0.3776 9 7 6.0677 4.2662 -0.4983 10 6 7.3868 4.5136 -0.6215 11 8 8.1797 3.5919 -0.6331 12 7 7.8269 5.7827 -0.7321 13 6 9.2027 6.0465 -0.7681 14 6 10.0657 5.1538 -1.3862 15 6 11.4216 5.4181 -1.4265 16 6 11.9247 6.5679 -0.8397 17 9 13.2517 6.8183 -0.8768 18 6 11.0711 7.4605 -0.2163 19 6 9.7081 7.2044 -0.1775 20 8 8.8682 8.0791 0.4333 21 6 9.4055 9.2306 0.8835 22 1 10.4723 9.3881 0.8245 23 6 8.5886 10.2126 1.4223 24 7 7.2889 10.0210 1.4938 25 14 9.3331 11.8085 2.0455 26 1 10.0337 12.4962 0.9314 27 1 8.2556 12.6863 2.5688 28 1 10.3017 11.5120 3.1315 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0143 1.6541 2.0139 35 1 4.0030 0.9835 0.7595 36 1 3.8570 0.8801 -1.0114 37 1 3.6263 3.3457 -1.1365 38 1 3.7724 3.4492 0.6345 39 1 6.0277 2.4258 0.5075 40 1 5.8811 2.3225 -1.2635 41 1 5.4351 5.0015 -0.4887 42 1 7.1914 6.5134 -0.7867 43 1 9.6774 4.2540 -1.8400 44 1 12.0914 4.7242 -1.9124 45 1 11.4655 8.3563 0.2401 46 1 6.7174 10.7079 1.8711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761669648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:22 Heat of formation + Delta-G solvation = -145.359283 kcal Electronic energy + Delta-G solvation = -28586.429039 eV Core-core repulsion = 24197.870130 eV Total energy + Delta-G solvation = -4388.558910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.22793 -40.20949 -38.87737 -38.51688 -36.50206 -35.40889 -33.99931 -33.28185 -32.41101 -32.34519 -29.41402 -28.65543 -27.37392 -25.48858 -24.21984 -22.44482 -21.77769 -21.65981 -21.44155 -20.39044 -18.33230 -18.16059 -17.59125 -16.85600 -16.71766 -16.34012 -15.67400 -15.44442 -15.21298 -15.15116 -14.96906 -14.66066 -14.49804 -14.28620 -13.86241 -13.71195 -13.53845 -13.47338 -13.22096 -13.05649 -12.59708 -12.41452 -12.21692 -12.11790 -11.89345 -11.76741 -11.65165 -11.37355 -11.33978 -11.05156 -11.01414 -10.91545 -10.72258 -10.56234 -10.18507 -9.84976 -9.74503 -9.42737 -8.95515 -8.93731 -7.84825 -7.07685 -6.59190 -4.17111 1.88237 2.15169 2.92634 3.08149 3.08788 3.11223 3.49748 3.86055 3.99126 4.27490 4.37935 4.49296 4.58706 4.62802 4.77670 4.88544 4.92688 4.97225 5.01207 5.14468 5.18412 5.28351 5.37211 5.46311 5.53242 5.56774 5.60184 5.64813 5.76421 5.80109 5.87630 5.99946 6.03088 6.06420 6.23828 6.54654 6.65267 6.72516 6.93595 6.95955 7.09949 7.17715 7.33219 7.33885 7.69203 7.85062 8.29858 8.85849 8.89284 9.48588 10.57829 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.002294 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.410544 B =12203.537860 C =14619.944061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.105 3.895 4 H 0.098 0.902 5 O -0.560 6.560 6 C -0.148 4.148 7 C -0.129 4.129 8 C 0.141 3.859 9 N -0.747 5.747 10 C 0.704 3.296 11 O -0.588 6.588 12 N -0.665 5.665 13 C 0.078 3.922 14 C -0.050 4.050 15 C -0.228 4.228 16 C 0.128 3.872 17 F -0.152 7.152 18 C -0.258 4.258 19 C 0.157 3.843 20 O -0.168 6.168 21 C -0.393 4.393 22 H 0.094 0.906 23 C 0.043 3.957 24 N -0.860 5.860 25 Si 0.942 3.058 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.374 0.626 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.399 0.601 42 H 0.411 0.589 43 H 0.143 0.857 44 H 0.122 0.878 45 H 0.143 0.857 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 -14.701 -3.802 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.046 3.954 4 H 0.116 0.884 5 O -0.365 6.365 6 C -0.186 4.186 7 C -0.167 4.167 8 C 0.016 3.984 9 N -0.403 5.403 10 C 0.404 3.596 11 O -0.466 6.466 12 N -0.312 5.312 13 C -0.017 4.017 14 C -0.071 4.071 15 C -0.249 4.249 16 C 0.108 3.892 17 F -0.131 7.131 18 C -0.279 4.279 19 C 0.101 3.899 20 O -0.071 6.071 21 C -0.469 4.469 22 H 0.111 0.889 23 C -0.162 4.162 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.221 0.779 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.233 0.767 42 H 0.247 0.753 43 H 0.160 0.840 44 H 0.140 0.860 45 H 0.160 0.840 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.145 -15.020 -4.065 18.576 hybrid contribution 0.412 1.166 0.719 1.430 sum -9.733 -13.855 -3.346 17.259 Atomic orbital electron populations 1.21710 0.95181 1.01391 1.02442 1.22256 0.97114 0.97366 1.02774 1.21996 0.93020 0.92525 0.87860 0.88391 1.86601 1.76954 1.57296 1.15664 1.22223 0.96149 0.97042 1.03235 1.21743 0.94199 0.97325 1.03421 1.21157 0.93210 0.82104 1.01898 1.45068 1.06001 1.09218 1.80026 1.15888 0.82479 0.83323 0.77869 1.90865 1.54027 1.43482 1.58241 1.42191 1.06230 1.07079 1.75657 1.16653 0.82453 0.96754 1.05833 1.20676 0.91556 0.98491 0.96394 1.20487 0.95871 0.98779 1.09740 1.17452 0.76587 0.95426 0.99771 1.91405 1.32308 1.94450 1.94910 1.20836 0.92736 1.03570 1.10789 1.18825 0.88980 0.90881 0.91261 1.83934 1.33891 1.26464 1.62798 1.21303 0.93852 0.91125 1.40590 0.88896 1.25273 0.95263 0.98967 0.96689 1.69997 1.03179 1.34686 1.41600 0.85756 0.78521 0.79751 0.79345 1.19360 1.20209 1.19381 0.92948 0.92751 0.92059 0.91647 0.91056 0.77919 0.91190 0.90666 0.91264 0.90396 0.91822 0.91883 0.76737 0.75323 0.83975 0.85977 0.83988 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.81 37.16 0.36 -0.52 16 2 C -0.16 -0.87 5.61 -26.73 -0.15 -1.02 16 3 C 0.11 0.69 2.97 -26.73 -0.08 0.61 16 4 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 5 O -0.56 -4.42 12.41 -35.23 -0.44 -4.86 16 6 C -0.15 -0.96 4.89 -26.73 -0.13 -1.09 16 7 C -0.13 -1.06 5.23 -26.73 -0.14 -1.20 16 8 C 0.14 1.55 5.67 -4.04 -0.02 1.53 16 9 N -0.75 -9.98 5.56 -65.22 -0.36 -10.35 16 10 C 0.70 12.47 8.41 -86.92 -0.73 11.74 16 11 O -0.59 -11.98 13.76 5.29 0.07 -11.91 16 12 N -0.66 -12.47 5.20 -14.08 -0.07 -12.54 16 13 C 0.08 1.65 6.33 -83.44 -0.53 1.12 16 14 C -0.05 -0.99 8.70 -39.42 -0.34 -1.34 16 15 C -0.23 -4.32 10.02 -39.48 -0.40 -4.72 16 16 C 0.13 2.58 7.29 -39.43 -0.29 2.30 16 17 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 18 C -0.26 -5.70 9.14 -39.36 -0.36 -6.06 16 19 C 0.16 3.65 6.66 -38.94 -0.26 3.39 16 20 O -0.17 -4.41 9.32 0.02 0.00 -4.41 16 21 C -0.39 -10.39 9.49 30.88 0.29 -10.10 16 22 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 23 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 24 N -0.86 -23.51 13.67 55.48 0.76 -22.75 16 25 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 28 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.41 7.82 -51.92 -0.41 0.00 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.37 1.83 9.05 45.56 0.41 2.24 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.71 7.82 -51.93 -0.41 0.30 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.40 4.55 8.49 -40.82 -0.35 4.21 16 42 H 0.41 7.31 8.59 -40.82 -0.35 6.96 16 43 H 0.14 2.73 6.19 -52.49 -0.32 2.40 16 44 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 45 H 0.14 3.12 5.64 -52.49 -0.30 2.82 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -31.43 390.35 -7.79 -39.21 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.78 Total: 14.22 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.87 Total: -4.33 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.32 Total: -45.64 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.36 Total: -21.18 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.43 -7.79 -39.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761669648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.146 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds