Wall clock time and date at job start Sat Apr 11 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 H 1.08997 * 109.47104 * 305.00205 * 3 2 1 5 5 O 1.42901 * 109.46911 * 65.00127 * 3 2 1 6 6 C 1.53002 * 109.47084 * 185.00206 * 3 2 1 7 7 C 1.53008 * 109.46647 * 175.00050 * 6 3 2 8 8 C 1.53002 * 109.46647 * 180.02562 * 7 6 3 9 9 N 1.46506 * 109.47134 * 179.97438 * 8 7 6 10 10 C 1.34767 * 119.99993 * 179.97438 * 9 8 7 11 11 O 1.21590 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99895 * 180.02562 * 10 9 8 13 13 C 1.40132 * 120.00144 * 175.63330 * 12 10 9 14 14 C 1.38693 * 120.07536 * 34.59596 * 13 12 10 15 15 C 1.38206 * 120.02298 * 179.70087 * 14 13 12 16 16 C 1.38545 * 120.17086 * 0.60087 * 15 14 13 17 17 F 1.35092 * 119.92516 * 179.70002 * 16 15 14 18 18 C 1.38342 * 120.14905 * 359.67478 * 16 15 14 19 19 C 1.38734 * 119.97993 * 0.02658 * 18 16 15 20 20 O 1.35782 * 120.08876 * 180.02562 * 19 18 16 21 21 C 1.34805 * 117.00119 * 5.43081 * 20 19 18 22 22 H 1.08003 * 119.99906 * 354.95562 * 21 20 19 23 23 C 1.38635 * 120.00180 * 174.95678 * 21 20 19 24 24 N 1.31568 * 119.99980 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99849 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47335 * 59.99921 * 25 23 21 27 27 H 1.48506 * 109.47078 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47047 * 299.99505 * 25 23 21 29 29 H 1.08995 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47425 * 59.99527 * 1 2 3 31 31 H 1.09007 * 109.46832 * 299.99586 * 1 2 3 32 32 H 1.08999 * 109.47425 * 120.00473 * 2 1 3 33 33 H 1.09003 * 109.47189 * 240.00104 * 2 1 3 34 34 H 0.96700 * 113.99618 * 60.00339 * 5 3 2 35 35 H 1.08996 * 109.47327 * 294.99731 * 6 3 2 36 36 H 1.08996 * 109.46963 * 55.00596 * 6 3 2 37 37 H 1.08996 * 109.46997 * 299.99884 * 7 6 3 38 38 H 1.08996 * 109.46993 * 60.00565 * 7 6 3 39 39 H 1.08999 * 109.47094 * 300.00155 * 8 7 6 40 40 H 1.09007 * 109.47044 * 60.00105 * 8 7 6 41 41 H 0.97001 * 119.99371 * 0.02562 * 9 8 7 42 42 H 0.96998 * 119.99515 * 355.63042 * 12 10 9 43 43 H 1.07999 * 119.99051 * 359.97438 * 14 13 12 44 44 H 1.07993 * 119.91456 * 180.29579 * 15 14 13 45 45 H 1.08001 * 120.01191 * 180.02562 * 18 16 15 46 46 H 0.96995 * 120.00001 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 3.5649 1.4443 -0.1258 7 6 4.0645 2.8850 -0.2512 8 6 5.5893 2.8867 -0.3776 9 7 6.0677 4.2662 -0.4983 10 6 7.3868 4.5136 -0.6215 11 8 8.1797 3.5919 -0.6331 12 7 7.8269 5.7827 -0.7321 13 6 9.2027 6.0465 -0.7681 14 6 10.0657 5.1538 -1.3862 15 6 11.4216 5.4181 -1.4265 16 6 11.9247 6.5679 -0.8397 17 9 13.2517 6.8183 -0.8768 18 6 11.0711 7.4605 -0.2163 19 6 9.7081 7.2044 -0.1775 20 8 8.8682 8.0791 0.4333 21 6 9.4055 9.2306 0.8835 22 1 10.4723 9.3881 0.8245 23 6 8.5886 10.2126 1.4223 24 7 7.2889 10.0210 1.4938 25 14 9.3331 11.8085 2.0455 26 1 10.0337 12.4962 0.9314 27 1 8.2556 12.6863 2.5688 28 1 10.3017 11.5120 3.1315 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0143 1.6541 2.0139 35 1 4.0030 0.9835 0.7595 36 1 3.8570 0.8801 -1.0114 37 1 3.6263 3.3457 -1.1365 38 1 3.7724 3.4492 0.6345 39 1 6.0277 2.4258 0.5075 40 1 5.8811 2.3225 -1.2635 41 1 5.4351 5.0015 -0.4887 42 1 7.1914 6.5134 -0.7867 43 1 9.6774 4.2540 -1.8400 44 1 12.0914 4.7242 -1.9124 45 1 11.4655 8.3563 0.2401 46 1 6.7174 10.7079 1.8711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761669648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:22 Heat of formation + Delta-G solvation = -167.099207 kcal Electronic energy + Delta-G solvation = -28587.371753 eV Core-core repulsion = 24197.870130 eV Total energy + Delta-G solvation = -4389.501624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.82139 -41.72571 -40.42244 -39.17917 -38.14294 -36.51075 -35.54146 -34.30564 -33.89403 -33.15032 -31.08089 -30.04233 -28.36740 -27.36701 -25.05342 -23.98713 -23.21015 -22.38555 -22.17955 -21.76442 -20.14098 -19.67329 -19.14983 -18.32230 -17.38741 -17.12731 -17.02970 -16.90275 -16.61042 -16.46838 -16.28046 -15.97478 -15.68804 -15.57631 -15.30414 -15.22593 -15.02471 -14.79078 -14.26929 -14.02114 -13.79013 -13.63764 -13.43414 -13.22178 -13.02181 -12.93274 -12.57747 -12.50366 -12.43359 -12.34344 -12.17100 -11.81815 -11.68978 -11.65468 -11.54170 -11.35352 -11.02706 -10.81697 -10.68605 -10.13965 -9.53754 -8.74000 -8.50430 -6.16693 0.22127 0.47417 1.37300 1.45761 1.51038 1.61886 2.05227 2.14889 2.69044 3.06130 3.14964 3.20324 3.46417 3.51742 3.75593 3.95448 3.99447 4.05968 4.17232 4.21563 4.32386 4.37567 4.41069 4.55018 4.60061 4.69732 4.75802 4.85729 4.94664 4.97401 5.00001 5.03163 5.13737 5.18892 5.23093 5.28422 5.33903 5.35297 5.41230 5.43894 5.49773 5.59042 5.91575 5.94979 6.08978 6.91792 6.93783 6.94797 7.46229 7.63837 8.69733 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.002294 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.410544 B =12203.537860 C =14619.944061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.107 3.893 4 H 0.092 0.908 5 O -0.579 6.579 6 C -0.142 4.142 7 C -0.118 4.118 8 C 0.140 3.860 9 N -0.732 5.732 10 C 0.701 3.299 11 O -0.614 6.614 12 N -0.667 5.667 13 C 0.078 3.922 14 C -0.051 4.051 15 C -0.203 4.203 16 C 0.122 3.878 17 F -0.144 7.144 18 C -0.264 4.264 19 C 0.130 3.870 20 O -0.202 6.202 21 C -0.417 4.417 22 H 0.099 0.901 23 C -0.009 4.009 24 N -0.905 5.905 25 Si 1.011 2.989 26 H -0.259 1.259 27 H -0.270 1.270 28 H -0.262 1.262 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.385 0.615 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.409 0.591 42 H 0.413 0.587 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.137 0.863 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 -15.850 -4.415 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.191 4.191 3 C 0.048 3.952 4 H 0.110 0.890 5 O -0.387 6.387 6 C -0.180 4.180 7 C -0.156 4.156 8 C 0.016 3.984 9 N -0.388 5.388 10 C 0.402 3.598 11 O -0.495 6.495 12 N -0.314 5.314 13 C -0.018 4.018 14 C -0.072 4.072 15 C -0.223 4.223 16 C 0.102 3.898 17 F -0.123 7.123 18 C -0.285 4.285 19 C 0.076 3.924 20 O -0.107 6.107 21 C -0.493 4.493 22 H 0.116 0.884 23 C -0.209 4.209 24 N -0.542 5.542 25 Si 0.831 3.169 26 H -0.184 1.184 27 H -0.195 1.195 28 H -0.187 1.187 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.234 0.766 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.245 0.755 42 H 0.249 0.751 43 H 0.171 0.829 44 H 0.176 0.824 45 H 0.154 0.846 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.677 -16.210 -4.692 19.453 hybrid contribution 0.318 1.296 0.800 1.556 sum -9.358 -14.914 -3.891 18.032 Atomic orbital electron populations 1.21712 0.95600 1.01664 1.01824 1.22220 0.96685 0.96680 1.03526 1.21984 0.92858 0.93046 0.87301 0.88973 1.86569 1.77384 1.58119 1.16618 1.22185 0.96079 0.95777 1.04006 1.21660 0.91943 0.98668 1.03329 1.21334 0.94948 0.80525 1.01547 1.45091 1.04616 1.10759 1.78327 1.16034 0.83610 0.82474 0.77725 1.90831 1.55106 1.43963 1.59588 1.42222 1.05571 1.07742 1.75853 1.16918 0.83819 0.96124 1.04906 1.20870 0.91792 0.98407 0.96122 1.20883 0.95972 0.98110 1.07356 1.17443 0.76759 0.95606 0.99979 1.91424 1.31593 1.94447 1.94852 1.20921 0.92753 1.03902 1.10910 1.19175 0.89472 0.91495 0.92243 1.83914 1.34844 1.27120 1.64808 1.21713 0.94453 0.91795 1.41295 0.88354 1.26379 0.95676 1.02187 0.96633 1.70109 1.04577 1.36076 1.43428 0.84746 0.77896 0.75305 0.78985 1.18368 1.19478 1.18652 0.92236 0.93005 0.93051 0.90965 0.90200 0.76599 0.90662 0.89637 0.90628 0.91196 0.92737 0.91622 0.75528 0.75061 0.82940 0.82425 0.84577 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 71.98 0.71 -0.91 16 2 C -0.15 -1.43 5.61 30.59 0.17 -1.26 16 3 C 0.11 1.25 2.97 30.59 0.09 1.34 16 4 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 5 O -0.58 -8.61 12.41 -148.98 -1.85 -10.46 16 6 C -0.14 -1.59 4.89 30.60 0.15 -1.44 16 7 C -0.12 -1.78 5.23 30.60 0.16 -1.62 16 8 C 0.14 2.93 5.67 86.38 0.49 3.42 16 9 N -0.73 -19.06 5.56 -478.52 -2.66 -21.72 16 10 C 0.70 24.51 8.41 179.06 1.51 26.02 16 11 O -0.61 -24.49 13.76 -4.00 -0.06 -24.55 16 12 N -0.67 -25.15 5.20 -316.70 -1.65 -26.80 16 13 C 0.08 3.29 6.33 38.22 0.24 3.53 16 14 C -0.05 -1.94 8.70 22.37 0.19 -1.74 16 15 C -0.20 -7.14 10.02 22.34 0.22 -6.92 16 16 C 0.12 4.75 7.29 22.37 0.16 4.92 16 17 F -0.14 -5.29 17.26 44.97 0.78 -4.52 16 18 C -0.26 -11.69 9.14 22.41 0.20 -11.48 16 19 C 0.13 6.17 6.66 22.68 0.15 6.32 16 20 O -0.20 -10.98 9.32 -22.84 -0.21 -11.19 16 21 C -0.42 -22.71 9.49 67.91 0.64 -22.07 16 22 H 0.10 5.03 5.20 -2.91 -0.02 5.01 16 23 C -0.01 -0.48 5.49 84.83 0.47 -0.02 16 24 N -0.91 -50.94 13.67 21.61 0.30 -50.65 16 25 Si 1.01 40.79 29.55 68.60 2.03 42.82 16 26 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 27 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 28 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.65 7.82 -2.38 -0.02 0.63 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.39 3.40 9.05 -74.06 -0.67 2.73 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.20 7.82 -2.39 -0.02 1.18 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.41 9.09 8.49 -92.71 -0.79 8.30 16 42 H 0.41 15.07 8.59 -92.71 -0.80 14.27 16 43 H 0.15 5.53 6.19 -2.91 -0.02 5.51 16 44 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 45 H 0.14 6.09 5.64 -2.91 -0.02 6.07 16 46 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -68.20 390.35 1.03 -67.17 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -1.21 Total: 41.81 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.56 Total: -1.91 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -4.01 Total: -99.17 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -2.12 Total: -46.20 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.52 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -68.20 1.03 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761669648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.934 kcal (2) G-P(sol) polarization free energy of solvation -68.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds