Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47037 * 2 1 4 4 H 1.09006 * 109.46929 * 55.00321 * 3 2 1 5 5 O 1.42898 * 109.47297 * 295.00297 * 3 2 1 6 6 C 1.52998 * 109.47173 * 174.99887 * 3 2 1 7 7 C 1.53002 * 109.47117 * 185.00120 * 6 3 2 8 8 C 1.53002 * 109.46866 * 180.02562 * 7 6 3 9 9 N 1.46497 * 109.46735 * 180.02562 * 8 7 6 10 10 C 1.34786 * 119.99573 * 180.02562 * 9 8 7 11 11 O 1.21588 * 119.99913 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99429 * 179.97438 * 10 9 8 13 13 C 1.40139 * 119.99628 * 174.33072 * 12 10 9 14 14 C 1.38698 * 120.07390 * 335.23136 * 13 12 10 15 15 C 1.38197 * 120.01641 * 179.70292 * 14 13 12 16 16 C 1.38551 * 120.17882 * 0.58798 * 15 14 13 17 17 F 1.35097 * 119.92614 * 179.70272 * 16 15 14 18 18 C 1.38345 * 120.14646 * 359.68848 * 16 15 14 19 19 C 1.38741 * 119.97915 * 0.02562 * 18 16 15 20 20 O 1.35773 * 120.08518 * 180.02562 * 19 18 16 21 21 C 1.34814 * 117.00276 * 5.20438 * 20 19 18 22 22 H 1.08002 * 119.99491 * 354.96960 * 21 20 19 23 23 C 1.38628 * 119.99847 * 174.97679 * 21 20 19 24 24 N 1.31578 * 119.99763 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00346 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46977 * 90.00228 * 25 23 21 27 27 H 1.48500 * 109.47234 * 209.99886 * 25 23 21 28 28 H 1.48496 * 109.46996 * 330.00178 * 25 23 21 29 29 H 1.09000 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46939 * 299.99357 * 1 2 3 31 31 H 1.09005 * 109.47151 * 59.99509 * 1 2 3 32 32 H 1.08997 * 109.46939 * 240.00643 * 2 1 3 33 33 H 1.08994 * 109.46898 * 120.00016 * 2 1 3 34 34 H 0.96700 * 113.99721 * 299.99959 * 5 3 2 35 35 H 1.09002 * 109.47046 * 305.00795 * 6 3 2 36 36 H 1.09005 * 109.46559 * 65.00247 * 6 3 2 37 37 H 1.08992 * 109.47004 * 300.00062 * 7 6 3 38 38 H 1.08995 * 109.46759 * 60.00479 * 7 6 3 39 39 H 1.09002 * 109.46721 * 300.00007 * 8 7 6 40 40 H 1.08992 * 109.47014 * 59.99807 * 8 7 6 41 41 H 0.96998 * 120.00381 * 359.97438 * 9 8 7 42 42 H 0.97000 * 120.00482 * 354.33028 * 12 10 9 43 43 H 1.07994 * 119.99017 * 359.97438 * 14 13 12 44 44 H 1.08006 * 119.91138 * 180.29879 * 15 14 13 45 45 H 1.08000 * 120.00676 * 180.02562 * 18 16 15 46 46 H 0.96999 * 119.99848 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0815 -1.2210 6 6 3.5649 1.4444 0.1257 7 6 4.0645 2.8851 0.2512 8 6 5.5894 2.8869 0.3763 9 7 6.0677 4.2663 0.4970 10 6 7.3870 4.5138 0.6192 11 8 8.1800 3.5922 0.6298 12 7 7.8270 5.7829 0.7298 13 6 9.1834 6.0352 0.9758 14 6 9.9667 5.0759 1.6001 15 6 11.3056 5.3235 1.8367 16 6 11.8667 6.5338 1.4627 17 9 13.1747 6.7728 1.7018 18 6 11.0906 7.4980 0.8446 19 6 9.7471 7.2538 0.5988 20 8 8.9836 8.1983 -0.0081 21 6 9.6137 9.3076 -0.4438 22 1 10.6630 9.4511 -0.2317 23 6 8.9148 10.2642 -1.1638 24 7 9.5297 11.3471 -1.5885 25 14 7.1002 10.0157 -1.5309 26 1 6.2884 10.6054 -0.4361 27 1 6.7591 10.6814 -2.8138 28 1 6.8106 8.5630 -1.6346 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0141 1.6543 -2.0138 35 1 3.8571 0.8800 1.0113 36 1 4.0029 0.9837 -0.7597 37 1 3.7723 3.4493 -0.6343 38 1 3.6264 3.3457 1.1366 39 1 5.8819 2.3225 1.2617 40 1 6.0271 2.4263 -0.5093 41 1 5.4351 5.0016 0.4882 42 1 7.2050 6.5216 0.6390 43 1 9.5312 4.1334 1.8975 44 1 11.9151 4.5733 2.3186 45 1 11.5304 8.4405 0.5537 46 1 9.0408 12.0162 -2.0926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761669649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = -141.021862 kcal Electronic energy + Delta-G solvation = -28670.541435 eV Core-core repulsion = 24282.170610 eV Total energy + Delta-G solvation = -4388.370825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.25459 -40.43070 -39.04338 -38.63631 -36.68216 -35.55089 -34.20664 -33.37031 -32.52286 -32.45690 -29.58293 -28.84812 -27.51803 -25.42833 -24.33310 -22.55595 -21.83680 -21.71156 -21.53794 -20.56794 -18.42806 -18.20813 -17.77286 -17.00046 -16.81287 -16.45240 -15.81409 -15.57249 -15.37647 -15.22692 -15.01489 -14.79945 -14.59399 -14.14449 -14.04897 -13.86022 -13.70136 -13.48224 -13.24914 -13.16249 -12.67518 -12.47116 -12.42597 -12.26824 -11.99720 -11.89189 -11.84159 -11.50675 -11.43686 -11.14745 -11.10353 -10.98282 -10.80677 -10.46775 -10.27002 -9.98420 -9.77634 -9.55115 -9.10636 -8.99861 -7.94803 -7.16568 -6.53406 -4.20657 1.77984 2.03244 2.73783 3.10790 3.13750 3.23175 3.31251 3.89925 4.09157 4.17267 4.28701 4.31509 4.47452 4.53926 4.55442 4.68637 4.83238 4.91213 4.95827 5.01451 5.08653 5.18801 5.28077 5.37768 5.43636 5.48214 5.50924 5.55003 5.70196 5.71112 5.81358 5.89169 5.90683 5.91695 6.07552 6.37182 6.49584 6.62728 6.82949 6.89672 6.99672 7.13477 7.24655 7.47358 7.66249 7.88433 8.09842 8.68593 8.79628 9.34556 10.53843 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.002439 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.692878 B =11479.141610 C =13921.838590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.105 3.895 4 H 0.098 0.902 5 O -0.560 6.560 6 C -0.148 4.148 7 C -0.129 4.129 8 C 0.140 3.860 9 N -0.747 5.747 10 C 0.703 3.297 11 O -0.581 6.581 12 N -0.667 5.667 13 C 0.085 3.915 14 C -0.064 4.064 15 C -0.216 4.216 16 C 0.123 3.877 17 F -0.149 7.149 18 C -0.242 4.242 19 C 0.160 3.840 20 O -0.212 6.212 21 C -0.390 4.390 22 H 0.109 0.891 23 C 0.065 3.935 24 N -0.873 5.873 25 Si 0.906 3.094 26 H -0.272 1.272 27 H -0.281 1.281 28 H -0.261 1.261 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.374 0.626 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.397 0.603 42 H 0.409 0.591 43 H 0.150 0.850 44 H 0.124 0.876 45 H 0.149 0.851 46 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.075 -18.883 4.004 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.046 3.954 4 H 0.116 0.884 5 O -0.366 6.366 6 C -0.187 4.187 7 C -0.167 4.167 8 C 0.015 3.985 9 N -0.404 5.404 10 C 0.404 3.596 11 O -0.459 6.459 12 N -0.313 5.313 13 C -0.010 4.010 14 C -0.084 4.084 15 C -0.237 4.237 16 C 0.103 3.897 17 F -0.128 7.128 18 C -0.263 4.263 19 C 0.106 3.894 20 O -0.117 6.117 21 C -0.465 4.465 22 H 0.126 0.874 23 C -0.139 4.139 24 N -0.510 5.510 25 Si 0.731 3.269 26 H -0.197 1.197 27 H -0.207 1.207 28 H -0.185 1.185 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.221 0.779 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.231 0.769 42 H 0.244 0.756 43 H 0.168 0.832 44 H 0.142 0.858 45 H 0.167 0.833 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.932 -19.100 4.254 24.615 hybrid contribution -0.591 0.550 -0.653 1.039 sum -15.523 -18.550 3.600 24.455 Atomic orbital electron populations 1.21712 0.95151 1.01446 1.02432 1.22255 0.97143 0.97300 1.02810 1.21998 0.92976 0.92599 0.87831 0.88384 1.86597 1.76991 1.57295 1.15685 1.22224 0.96193 0.96943 1.03310 1.21743 0.94130 0.97451 1.03366 1.21187 0.93275 0.81907 1.02090 1.45103 1.05835 1.09337 1.80075 1.15861 0.82539 0.83202 0.78019 1.90858 1.53812 1.43517 1.57717 1.42258 1.08358 1.06725 1.73984 1.16711 0.83545 0.93901 1.06867 1.20806 0.92490 0.99054 0.96098 1.20563 0.96013 0.97016 1.10076 1.17462 0.77634 0.94778 0.99807 1.91422 1.33863 1.94950 1.92587 1.20952 0.94011 1.02094 1.09261 1.18389 0.89237 0.88177 0.93643 1.83486 1.35543 1.26752 1.65903 1.20749 0.97386 0.93807 1.34554 0.87383 1.24471 1.00139 0.94270 0.95046 1.69647 1.37382 1.08631 1.35310 0.86188 0.83133 0.79432 0.78124 1.19743 1.20650 1.18492 0.92900 0.92746 0.92068 0.91629 0.91019 0.77909 0.90588 0.91157 0.90486 0.91229 0.91682 0.91691 0.76890 0.75590 0.83221 0.85761 0.83336 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.81 37.16 0.36 -0.43 16 2 C -0.16 -0.76 5.61 -26.73 -0.15 -0.91 16 3 C 0.10 0.60 2.96 -26.73 -0.08 0.52 16 4 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 5 O -0.56 -3.92 12.41 -35.23 -0.44 -4.36 16 6 C -0.15 -0.82 4.89 -26.73 -0.13 -0.95 16 7 C -0.13 -0.90 5.23 -26.73 -0.14 -1.04 16 8 C 0.14 1.35 5.67 -4.04 -0.02 1.33 16 9 N -0.75 -8.80 5.56 -65.23 -0.36 -9.16 16 10 C 0.70 11.37 8.37 -86.91 -0.73 10.64 16 11 O -0.58 -11.01 13.51 5.29 0.07 -10.94 16 12 N -0.67 -11.46 5.30 -14.07 -0.07 -11.54 16 13 C 0.08 1.68 6.45 -83.43 -0.54 1.14 16 14 C -0.06 -1.19 8.71 -39.43 -0.34 -1.54 16 15 C -0.22 -3.94 10.02 -39.48 -0.40 -4.33 16 16 C 0.12 2.45 7.29 -39.43 -0.29 2.16 16 17 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 18 C -0.24 -5.28 9.14 -39.36 -0.36 -5.64 16 19 C 0.16 3.55 6.66 -38.94 -0.26 3.29 16 20 O -0.21 -5.13 8.00 0.02 0.00 -5.13 16 21 C -0.39 -10.41 9.95 30.88 0.31 -10.11 16 22 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 23 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 24 N -0.87 -24.30 13.96 55.48 0.77 -23.53 16 25 Si 0.91 20.13 28.62 -169.99 -4.86 15.26 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 7.82 -51.93 -0.41 -0.04 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.37 1.50 9.05 45.56 0.41 1.91 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.59 7.82 -51.93 -0.41 0.19 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.40 3.79 8.49 -40.82 -0.35 3.44 16 42 H 0.41 6.45 8.36 -40.82 -0.34 6.11 16 43 H 0.15 2.73 5.78 -52.49 -0.30 2.43 16 44 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 45 H 0.15 3.38 5.63 -52.49 -0.30 3.09 16 46 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -31.13 388.40 -7.62 -38.74 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.76 Total: 11.87 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.86 Total: -4.24 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.34 Total: -44.22 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.37 Total: -20.42 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.86 Total: 15.26 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.13 -7.62 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761669649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.278 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds