Wall clock time and date at job start Sat Apr 11 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47037 * 2 1 4 4 H 1.09006 * 109.46929 * 55.00321 * 3 2 1 5 5 O 1.42898 * 109.47297 * 295.00297 * 3 2 1 6 6 C 1.52998 * 109.47173 * 174.99887 * 3 2 1 7 7 C 1.53002 * 109.47117 * 185.00120 * 6 3 2 8 8 C 1.53002 * 109.46866 * 180.02562 * 7 6 3 9 9 N 1.46497 * 109.46735 * 180.02562 * 8 7 6 10 10 C 1.34786 * 119.99573 * 180.02562 * 9 8 7 11 11 O 1.21588 * 119.99913 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99429 * 179.97438 * 10 9 8 13 13 C 1.40139 * 119.99628 * 174.33072 * 12 10 9 14 14 C 1.38698 * 120.07390 * 335.23136 * 13 12 10 15 15 C 1.38197 * 120.01641 * 179.70292 * 14 13 12 16 16 C 1.38551 * 120.17882 * 0.58798 * 15 14 13 17 17 F 1.35097 * 119.92614 * 179.70272 * 16 15 14 18 18 C 1.38345 * 120.14646 * 359.68848 * 16 15 14 19 19 C 1.38741 * 119.97915 * 0.02562 * 18 16 15 20 20 O 1.35773 * 120.08518 * 180.02562 * 19 18 16 21 21 C 1.34814 * 117.00276 * 5.20438 * 20 19 18 22 22 H 1.08002 * 119.99491 * 354.96960 * 21 20 19 23 23 C 1.38628 * 119.99847 * 174.97679 * 21 20 19 24 24 N 1.31578 * 119.99763 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00346 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46977 * 90.00228 * 25 23 21 27 27 H 1.48500 * 109.47234 * 209.99886 * 25 23 21 28 28 H 1.48496 * 109.46996 * 330.00178 * 25 23 21 29 29 H 1.09000 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46939 * 299.99357 * 1 2 3 31 31 H 1.09005 * 109.47151 * 59.99509 * 1 2 3 32 32 H 1.08997 * 109.46939 * 240.00643 * 2 1 3 33 33 H 1.08994 * 109.46898 * 120.00016 * 2 1 3 34 34 H 0.96700 * 113.99721 * 299.99959 * 5 3 2 35 35 H 1.09002 * 109.47046 * 305.00795 * 6 3 2 36 36 H 1.09005 * 109.46559 * 65.00247 * 6 3 2 37 37 H 1.08992 * 109.47004 * 300.00062 * 7 6 3 38 38 H 1.08995 * 109.46759 * 60.00479 * 7 6 3 39 39 H 1.09002 * 109.46721 * 300.00007 * 8 7 6 40 40 H 1.08992 * 109.47014 * 59.99807 * 8 7 6 41 41 H 0.96998 * 120.00381 * 359.97438 * 9 8 7 42 42 H 0.97000 * 120.00482 * 354.33028 * 12 10 9 43 43 H 1.07994 * 119.99017 * 359.97438 * 14 13 12 44 44 H 1.08006 * 119.91138 * 180.29879 * 15 14 13 45 45 H 1.08000 * 120.00676 * 180.02562 * 18 16 15 46 46 H 0.96999 * 119.99848 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0815 -1.2210 6 6 3.5649 1.4444 0.1257 7 6 4.0645 2.8851 0.2512 8 6 5.5894 2.8869 0.3763 9 7 6.0677 4.2663 0.4970 10 6 7.3870 4.5138 0.6192 11 8 8.1800 3.5922 0.6298 12 7 7.8270 5.7829 0.7298 13 6 9.1834 6.0352 0.9758 14 6 9.9667 5.0759 1.6001 15 6 11.3056 5.3235 1.8367 16 6 11.8667 6.5338 1.4627 17 9 13.1747 6.7728 1.7018 18 6 11.0906 7.4980 0.8446 19 6 9.7471 7.2538 0.5988 20 8 8.9836 8.1983 -0.0081 21 6 9.6137 9.3076 -0.4438 22 1 10.6630 9.4511 -0.2317 23 6 8.9148 10.2642 -1.1638 24 7 9.5297 11.3471 -1.5885 25 14 7.1002 10.0157 -1.5309 26 1 6.2884 10.6054 -0.4361 27 1 6.7591 10.6814 -2.8138 28 1 6.8106 8.5630 -1.6346 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0141 1.6543 -2.0138 35 1 3.8571 0.8800 1.0113 36 1 4.0029 0.9837 -0.7597 37 1 3.7723 3.4493 -0.6343 38 1 3.6264 3.3457 1.1366 39 1 5.8819 2.3225 1.2617 40 1 6.0271 2.4263 -0.5093 41 1 5.4351 5.0016 0.4882 42 1 7.2050 6.5216 0.6390 43 1 9.5312 4.1334 1.8975 44 1 11.9151 4.5733 2.3186 45 1 11.5304 8.4405 0.5537 46 1 9.0408 12.0162 -2.0926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761669649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:24 Heat of formation + Delta-G solvation = -162.751000 kcal Electronic energy + Delta-G solvation = -28671.483682 eV Core-core repulsion = 24282.170610 eV Total energy + Delta-G solvation = -4389.313071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.83934 -41.84900 -40.54492 -39.18436 -38.25352 -36.53963 -35.64126 -34.46905 -33.89943 -33.16563 -31.22016 -30.17883 -28.40205 -27.30931 -25.08911 -23.99452 -23.20744 -22.39645 -22.18673 -21.81620 -20.15871 -19.78842 -19.24564 -18.39738 -17.39429 -17.25755 -17.09834 -16.89822 -16.61763 -16.47667 -16.32032 -15.89002 -15.75124 -15.66800 -15.39259 -15.26658 -15.02193 -14.82068 -14.27273 -14.25141 -13.86657 -13.67514 -13.59645 -13.27752 -13.09847 -12.94134 -12.65089 -12.50735 -12.44416 -12.39236 -12.17198 -11.82011 -11.68440 -11.65864 -11.53939 -11.42866 -11.09827 -10.92576 -10.68464 -10.15411 -9.60993 -8.75083 -8.51327 -6.25430 0.17299 0.39988 1.33482 1.38626 1.51242 1.55844 1.98888 2.26432 2.65388 2.75690 3.02859 3.13061 3.38688 3.51816 3.75811 3.89385 3.99442 4.06851 4.13953 4.21852 4.27621 4.32536 4.41474 4.51530 4.55505 4.70677 4.75554 4.86291 4.88002 4.96872 5.00513 5.08111 5.13956 5.17318 5.19424 5.26476 5.34477 5.41142 5.44021 5.45735 5.48983 5.60280 5.81707 5.91817 6.09185 6.80225 6.90715 6.92027 7.37860 7.47138 8.59571 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.002439 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.692878 B =11479.141610 C =13921.838590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.154 4.154 3 C 0.107 3.893 4 H 0.092 0.908 5 O -0.579 6.579 6 C -0.143 4.143 7 C -0.118 4.118 8 C 0.139 3.861 9 N -0.730 5.730 10 C 0.701 3.299 11 O -0.608 6.608 12 N -0.668 5.668 13 C 0.096 3.904 14 C -0.064 4.064 15 C -0.188 4.188 16 C 0.113 3.887 17 F -0.147 7.147 18 C -0.253 4.253 19 C 0.134 3.866 20 O -0.222 6.222 21 C -0.401 4.401 22 H 0.079 0.921 23 C 0.011 3.989 24 N -0.920 5.920 25 Si 0.973 3.027 26 H -0.260 1.260 27 H -0.276 1.276 28 H -0.251 1.251 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.385 0.615 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.411 0.589 42 H 0.416 0.584 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.127 0.873 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.970 -21.540 4.732 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.049 3.951 4 H 0.110 0.890 5 O -0.386 6.386 6 C -0.181 4.181 7 C -0.156 4.156 8 C 0.015 3.985 9 N -0.386 5.386 10 C 0.402 3.598 11 O -0.489 6.489 12 N -0.315 5.315 13 C 0.000 4.000 14 C -0.084 4.084 15 C -0.208 4.208 16 C 0.093 3.907 17 F -0.125 7.125 18 C -0.274 4.274 19 C 0.082 3.918 20 O -0.129 6.129 21 C -0.476 4.476 22 H 0.097 0.903 23 C -0.188 4.188 24 N -0.560 5.560 25 Si 0.794 3.206 26 H -0.184 1.184 27 H -0.201 1.201 28 H -0.174 1.174 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.234 0.766 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.247 0.753 42 H 0.252 0.748 43 H 0.181 0.819 44 H 0.178 0.822 45 H 0.145 0.855 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.860 -21.795 4.998 28.005 hybrid contribution 0.104 1.154 -0.767 1.390 sum -16.756 -20.641 4.230 26.921 Atomic orbital electron populations 1.21715 0.95667 1.01625 1.01828 1.22225 0.96634 0.96829 1.03485 1.21976 0.92930 0.92932 0.87312 0.88958 1.86564 1.77429 1.58053 1.16603 1.22186 0.95995 0.95969 1.03986 1.21659 0.91950 0.98547 1.03444 1.21348 0.94930 0.80473 1.01708 1.45089 1.04415 1.10850 1.78255 1.15992 0.83680 0.82292 0.77816 1.90830 1.54958 1.44058 1.59044 1.42275 1.07451 1.07636 1.74113 1.16858 0.84915 0.92842 1.05349 1.21042 0.92596 0.99098 0.95678 1.20958 0.96030 0.96409 1.07390 1.17497 0.77747 0.95123 1.00372 1.91428 1.33537 1.95007 1.92564 1.20957 0.94543 1.01990 1.09873 1.18692 0.89565 0.89020 0.94530 1.83435 1.35288 1.26566 1.67602 1.20635 0.96584 0.95172 1.35253 0.90321 1.25350 1.04982 0.93762 0.94738 1.69747 1.39408 1.09848 1.36952 0.85188 0.77233 0.79873 0.78312 1.18413 1.20070 1.17429 0.92347 0.93009 0.93013 0.90992 0.90278 0.76587 0.89756 0.90647 0.90934 0.90586 0.91644 0.92495 0.75344 0.74798 0.81897 0.82195 0.85518 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.81 71.98 0.71 -0.69 16 2 C -0.15 -1.17 5.61 30.60 0.17 -1.00 16 3 C 0.11 1.00 2.96 30.59 0.09 1.09 16 4 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 5 O -0.58 -7.08 12.41 -148.98 -1.85 -8.93 16 6 C -0.14 -1.21 4.89 30.59 0.15 -1.06 16 7 C -0.12 -1.34 5.23 30.60 0.16 -1.18 16 8 C 0.14 2.35 5.67 86.38 0.49 2.84 16 9 N -0.73 -15.33 5.56 -478.53 -2.66 -17.99 16 10 C 0.70 21.10 8.37 179.05 1.50 22.60 16 11 O -0.61 -21.67 13.51 -3.99 -0.05 -21.72 16 12 N -0.67 -21.77 5.30 -316.69 -1.68 -23.45 16 13 C 0.10 3.70 6.45 38.22 0.25 3.95 16 14 C -0.06 -2.22 8.71 22.37 0.19 -2.02 16 15 C -0.19 -6.32 10.02 22.33 0.22 -6.10 16 16 C 0.11 4.39 7.29 22.37 0.16 4.55 16 17 F -0.15 -5.55 17.26 44.97 0.78 -4.77 16 18 C -0.25 -11.30 9.14 22.42 0.20 -11.10 16 19 C 0.13 6.00 6.66 22.68 0.15 6.15 16 20 O -0.22 -10.94 8.00 -22.83 -0.18 -11.12 16 21 C -0.40 -22.31 9.95 67.91 0.68 -21.63 16 22 H 0.08 4.71 5.44 -2.91 -0.02 4.69 16 23 C 0.01 0.59 5.49 84.82 0.47 1.06 16 24 N -0.92 -53.12 13.96 21.61 0.30 -52.82 16 25 Si 0.97 41.52 28.62 68.60 1.96 43.48 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 27 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.57 7.82 -2.38 -0.02 0.55 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.39 2.41 9.05 -74.06 -0.67 1.74 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.07 0.93 7.82 -2.39 -0.02 0.91 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.41 6.66 8.49 -92.71 -0.79 5.87 16 42 H 0.42 12.37 8.36 -92.71 -0.78 11.60 16 43 H 0.16 5.43 5.78 -2.91 -0.02 5.41 16 44 H 0.16 4.28 8.06 -2.91 -0.02 4.25 16 45 H 0.13 6.19 5.63 -2.91 -0.02 6.18 16 46 H 0.29 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -68.26 388.40 1.02 -67.24 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -1.19 Total: 32.62 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.59 Total: -2.54 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -4.04 Total: -94.25 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -2.09 Total: -41.77 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.78 Total: -4.77 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.96 Total: 43.48 kcal Total: -68.26 1.02 -67.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761669649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.516 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds