Wall clock time and date at job start Sat Apr 11 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46581 * 2 1 4 4 H 1.08996 * 109.46972 * 54.99850 * 3 2 1 5 5 C 1.53000 * 109.46461 * 174.99676 * 3 2 1 6 6 C 1.53007 * 109.46724 * 184.99533 * 5 3 2 7 7 H 1.08994 * 109.47229 * 305.00744 * 6 5 3 8 8 C 1.53002 * 109.46917 * 185.00115 * 6 5 3 9 9 O 1.42903 * 109.46557 * 65.00535 * 6 5 3 10 10 N 1.46495 * 109.46903 * 294.99534 * 3 2 1 11 11 C 1.34773 * 119.99954 * 85.00710 * 10 3 2 12 12 O 1.21599 * 120.00015 * 359.97438 * 11 10 3 13 13 N 1.34777 * 120.00333 * 179.97438 * 11 10 3 14 14 C 1.40135 * 120.00239 * 175.62846 * 13 11 10 15 15 C 1.38690 * 120.07643 * 34.59208 * 14 13 11 16 16 C 1.38199 * 120.02019 * 179.76677 * 15 14 13 17 17 C 1.38537 * 120.17727 * 0.51477 * 16 15 14 18 18 F 1.35101 * 119.92591 * 179.76387 * 17 16 15 19 19 C 1.38352 * 120.14926 * 359.74327 * 17 16 15 20 20 C 1.38735 * 119.97664 * 0.02562 * 19 17 16 21 21 O 1.35776 * 120.08630 * 179.97438 * 20 19 17 22 22 C 1.34809 * 116.99902 * 5.42270 * 21 20 19 23 23 H 1.07991 * 120.00110 * 354.95510 * 22 21 20 24 24 C 1.38635 * 119.99519 * 174.95773 * 22 21 20 25 25 N 1.31566 * 120.00455 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99862 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46887 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46978 * 119.99829 * 26 24 22 29 29 H 1.48499 * 109.47464 * 240.00249 * 26 24 22 30 30 H 1.08996 * 109.46955 * 60.00236 * 1 2 3 31 31 H 1.09006 * 109.46438 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47185 * 300.00040 * 1 2 3 33 33 H 1.08993 * 109.47185 * 239.99960 * 2 1 3 34 34 H 1.08996 * 109.46955 * 119.99764 * 2 1 3 35 35 H 1.09007 * 109.47389 * 65.00490 * 5 3 2 36 36 H 1.08990 * 109.47674 * 304.99748 * 5 3 2 37 37 H 1.09003 * 109.47091 * 300.00206 * 8 6 5 38 38 H 1.08997 * 109.47275 * 60.00249 * 8 6 5 39 39 H 1.08999 * 109.47079 * 180.02562 * 8 6 5 40 40 H 0.96700 * 114.00435 * 60.00431 * 9 6 5 41 41 H 0.97002 * 120.00069 * 265.00153 * 10 3 2 42 42 H 0.97000 * 119.99604 * 355.63636 * 13 11 10 43 43 H 1.07997 * 119.98963 * 0.03220 * 15 14 13 44 44 H 1.08003 * 119.91175 * 180.23260 * 16 15 14 45 45 H 1.08002 * 120.00722 * 180.02562 * 19 17 16 46 46 H 0.97008 * 120.00375 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 6 4.0644 2.8851 0.2511 7 1 3.6970 3.4716 -0.5909 8 6 5.5944 2.8961 0.2515 9 8 3.5837 3.4514 1.4719 10 7 1.6524 2.0974 -1.2518 11 6 0.4352 2.6643 -1.3670 12 8 -0.3416 2.6318 -0.4320 13 7 0.0787 3.2672 -2.5185 14 6 -1.2181 3.7758 -2.6709 15 6 -1.8819 4.3242 -1.5837 16 6 -3.1590 4.8298 -1.7364 17 6 -3.7841 4.7812 -2.9717 18 9 -5.0345 5.2727 -3.1142 19 6 -3.1307 4.2309 -4.0600 20 6 -1.8467 3.7258 -3.9149 21 8 -1.2036 3.1848 -4.9813 22 6 -1.8215 3.2699 -6.1764 23 1 -2.8191 3.6785 -6.2406 24 6 -1.1764 2.8327 -7.3229 25 7 0.0387 2.3343 -7.2447 26 14 -2.0329 2.9498 -8.9789 27 1 -3.3826 3.5420 -8.7972 28 1 -1.2343 3.8091 -9.8895 29 1 -2.1625 1.5922 -9.5664 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.0030 0.9836 -0.7596 36 1 3.8570 0.8802 1.0113 37 1 5.9617 2.3095 1.0936 38 1 5.9611 2.4641 -0.6796 39 1 5.9503 3.9224 0.3412 40 1 3.8723 2.9793 2.2650 41 1 2.2720 2.1231 -1.9978 42 1 0.7199 3.3490 -3.2418 43 1 -1.3990 4.3600 -0.6183 44 1 -3.6728 5.2599 -0.8893 45 1 -3.6200 4.1946 -5.0221 46 1 0.4900 2.0280 -8.0469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878936751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:45 Heat of formation + Delta-G solvation = -136.513199 kcal Electronic energy + Delta-G solvation = -30253.952107 eV Core-core repulsion = 25865.776792 eV Total energy + Delta-G solvation = -4388.175315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.20651 -40.38301 -39.07389 -38.09836 -36.51697 -35.57378 -33.96815 -32.39629 -32.00821 -31.84923 -29.39031 -28.90748 -27.81439 -25.48034 -24.24494 -22.68205 -21.79558 -21.56592 -20.81374 -20.37253 -18.33126 -18.24881 -17.58790 -16.90236 -16.42143 -16.02044 -15.69983 -15.36279 -15.19020 -15.01997 -14.91714 -14.40475 -14.27174 -13.91622 -13.76376 -13.64047 -13.48717 -13.19335 -13.15849 -12.63677 -12.61435 -12.38254 -12.27394 -12.10344 -11.77195 -11.62931 -11.34591 -11.33805 -11.13285 -10.98838 -10.93487 -10.71611 -10.64558 -10.51148 -10.12386 -9.77708 -9.69239 -9.35149 -8.95111 -8.80386 -7.82479 -7.05056 -6.59174 -4.16650 1.90839 2.17300 2.97728 3.06122 3.08813 3.13938 3.56146 3.86288 4.10227 4.37368 4.40500 4.57181 4.64802 4.84713 4.90272 4.97972 5.05417 5.13424 5.16382 5.20933 5.29081 5.44693 5.51141 5.59805 5.64345 5.78369 5.79846 5.86308 5.93881 6.04153 6.08452 6.13559 6.26138 6.33071 6.60222 6.69551 6.72652 6.77004 6.95667 6.98912 7.12747 7.20987 7.37088 7.45338 7.71893 7.85734 8.35054 8.87108 8.96183 9.49863 10.58060 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010042 B = 0.003379 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.564437 B = 8285.097860 C = 9883.318973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.168 3.832 4 H 0.096 0.904 5 C -0.161 4.161 6 C 0.100 3.900 7 H 0.100 0.900 8 C -0.186 4.186 9 O -0.558 6.558 10 N -0.740 5.740 11 C 0.706 3.294 12 O -0.578 6.578 13 N -0.667 5.667 14 C 0.080 3.920 15 C -0.050 4.050 16 C -0.228 4.228 17 C 0.126 3.874 18 F -0.152 7.152 19 C -0.259 4.259 20 C 0.156 3.844 21 O -0.169 6.169 22 C -0.391 4.391 23 H 0.094 0.906 24 C 0.043 3.957 25 N -0.861 5.861 26 Si 0.941 3.059 27 H -0.265 1.265 28 H -0.275 1.275 29 H -0.275 1.275 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.371 0.629 41 H 0.394 0.606 42 H 0.409 0.591 43 H 0.144 0.856 44 H 0.122 0.878 45 H 0.142 0.858 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -1.896 12.384 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.062 3.938 4 H 0.114 0.886 5 C -0.199 4.199 6 C 0.041 3.959 7 H 0.118 0.882 8 C -0.243 4.243 9 O -0.363 6.363 10 N -0.396 5.396 11 C 0.407 3.593 12 O -0.456 6.456 13 N -0.314 5.314 14 C -0.015 4.015 15 C -0.071 4.071 16 C -0.248 4.248 17 C 0.106 3.894 18 F -0.131 7.131 19 C -0.280 4.280 20 C 0.100 3.900 21 O -0.072 6.072 22 C -0.467 4.467 23 H 0.112 0.888 24 C -0.162 4.162 25 N -0.496 5.496 26 Si 0.766 3.234 27 H -0.190 1.190 28 H -0.201 1.201 29 H -0.201 1.201 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.217 0.783 41 H 0.228 0.772 42 H 0.245 0.755 43 H 0.162 0.838 44 H 0.140 0.860 45 H 0.159 0.841 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.814 -1.745 12.632 15.502 hybrid contribution 0.221 -0.397 -1.437 1.507 sum 9.035 -2.142 11.195 14.545 Atomic orbital electron populations 1.21776 0.94483 1.00181 1.03642 1.21989 0.97623 0.96149 1.01554 1.20797 0.92907 0.92913 0.87135 0.88565 1.22650 0.95758 0.97889 1.03617 1.21936 0.92442 0.93404 0.88079 0.88184 1.22521 0.96547 1.02700 1.02577 1.86676 1.76653 1.57414 1.15507 1.45129 1.16145 1.61279 1.17023 1.15819 0.82172 0.78058 0.83247 1.90880 1.51312 1.64861 1.38566 1.42214 1.12757 1.59549 1.16836 1.16644 0.86017 1.06341 0.92465 1.20693 0.93815 0.94429 0.98113 1.20493 0.97370 1.10964 0.95957 1.17461 0.79566 0.97827 0.94508 1.91407 1.39257 1.85795 1.96661 1.20840 0.96843 1.10587 0.99685 1.18833 0.90105 0.92663 0.88360 1.83934 1.43675 1.65533 1.14103 1.21395 1.00606 1.43637 0.81072 0.88833 1.25260 0.95852 0.96044 0.99031 1.70017 1.11739 1.37910 1.29887 0.85633 0.79169 0.78437 0.80186 1.18957 1.20055 1.20086 0.91821 0.94134 0.92234 0.92115 0.91751 0.90341 0.90098 0.92428 0.91489 0.91809 0.78279 0.77218 0.75522 0.83844 0.86022 0.84050 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.51 37.16 0.32 -1.74 16 2 C -0.13 -1.50 5.61 -26.72 -0.15 -1.65 16 3 C 0.17 1.85 2.21 -67.93 -0.15 1.70 16 4 H 0.10 1.28 7.13 -51.93 -0.37 0.91 16 5 C -0.16 -1.22 4.43 -26.73 -0.12 -1.34 16 6 C 0.10 0.85 3.53 -26.73 -0.09 0.75 16 7 H 0.10 1.00 7.62 -51.93 -0.40 0.60 16 8 C -0.19 -1.23 9.53 37.16 0.35 -0.88 16 9 O -0.56 -5.51 12.79 -35.23 -0.45 -5.96 16 10 N -0.74 -9.52 4.40 -58.68 -0.26 -9.78 16 11 C 0.71 12.04 6.98 -86.92 -0.61 11.43 16 12 O -0.58 -11.14 10.89 5.28 0.06 -11.09 16 13 N -0.67 -12.29 5.20 -14.07 -0.07 -12.36 16 14 C 0.08 1.68 6.33 -83.44 -0.53 1.15 16 15 C -0.05 -0.98 8.69 -39.43 -0.34 -1.32 16 16 C -0.23 -4.32 10.02 -39.49 -0.40 -4.71 16 17 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 18 F -0.15 -2.97 17.26 2.25 0.04 -2.94 16 19 C -0.26 -5.72 9.14 -39.36 -0.36 -6.08 16 20 C 0.16 3.63 6.66 -38.94 -0.26 3.37 16 21 O -0.17 -4.43 9.32 0.03 0.00 -4.43 16 22 C -0.39 -10.34 9.49 30.88 0.29 -10.04 16 23 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 24 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 25 N -0.86 -23.40 13.67 55.48 0.76 -22.64 16 26 Si 0.94 19.75 29.55 -169.99 -5.02 14.72 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 29 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 30 H 0.06 1.12 5.64 -51.93 -0.29 0.83 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.89 7.84 -51.93 -0.41 0.49 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.37 2.17 9.05 45.56 0.41 2.58 16 41 H 0.39 4.33 8.62 -40.82 -0.35 3.98 16 42 H 0.41 7.21 8.59 -40.82 -0.35 6.86 16 43 H 0.14 2.76 6.19 -52.49 -0.32 2.43 16 44 H 0.12 2.01 8.06 -52.48 -0.42 1.58 16 45 H 0.14 3.13 5.64 -52.49 -0.30 2.84 16 46 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -30.91 381.36 -7.22 -38.13 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -5.59 Total: 16.65 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.43 Total: -6.06 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.43 Total: -44.78 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.39 Total: -21.47 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.91 -7.22 -38.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878936751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.382 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds