Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46581 * 2 1 4 4 H 1.08996 * 109.46972 * 54.99850 * 3 2 1 5 5 C 1.53000 * 109.46461 * 174.99676 * 3 2 1 6 6 C 1.53007 * 109.46724 * 184.99533 * 5 3 2 7 7 H 1.08994 * 109.47229 * 305.00744 * 6 5 3 8 8 C 1.53002 * 109.46917 * 185.00115 * 6 5 3 9 9 O 1.42903 * 109.46557 * 65.00535 * 6 5 3 10 10 N 1.46495 * 109.46903 * 294.99534 * 3 2 1 11 11 C 1.34773 * 119.99954 * 85.00710 * 10 3 2 12 12 O 1.21599 * 120.00015 * 359.97438 * 11 10 3 13 13 N 1.34777 * 120.00333 * 179.97438 * 11 10 3 14 14 C 1.40135 * 120.00239 * 175.62846 * 13 11 10 15 15 C 1.38690 * 120.07643 * 34.59208 * 14 13 11 16 16 C 1.38199 * 120.02019 * 179.76677 * 15 14 13 17 17 C 1.38537 * 120.17727 * 0.51477 * 16 15 14 18 18 F 1.35101 * 119.92591 * 179.76387 * 17 16 15 19 19 C 1.38352 * 120.14926 * 359.74327 * 17 16 15 20 20 C 1.38735 * 119.97664 * 0.02562 * 19 17 16 21 21 O 1.35776 * 120.08630 * 179.97438 * 20 19 17 22 22 C 1.34809 * 116.99902 * 5.42270 * 21 20 19 23 23 H 1.07991 * 120.00110 * 354.95510 * 22 21 20 24 24 C 1.38635 * 119.99519 * 174.95773 * 22 21 20 25 25 N 1.31566 * 120.00455 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99862 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46887 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46978 * 119.99829 * 26 24 22 29 29 H 1.48499 * 109.47464 * 240.00249 * 26 24 22 30 30 H 1.08996 * 109.46955 * 60.00236 * 1 2 3 31 31 H 1.09006 * 109.46438 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47185 * 300.00040 * 1 2 3 33 33 H 1.08993 * 109.47185 * 239.99960 * 2 1 3 34 34 H 1.08996 * 109.46955 * 119.99764 * 2 1 3 35 35 H 1.09007 * 109.47389 * 65.00490 * 5 3 2 36 36 H 1.08990 * 109.47674 * 304.99748 * 5 3 2 37 37 H 1.09003 * 109.47091 * 300.00206 * 8 6 5 38 38 H 1.08997 * 109.47275 * 60.00249 * 8 6 5 39 39 H 1.08999 * 109.47079 * 180.02562 * 8 6 5 40 40 H 0.96700 * 114.00435 * 60.00431 * 9 6 5 41 41 H 0.97002 * 120.00069 * 265.00153 * 10 3 2 42 42 H 0.97000 * 119.99604 * 355.63636 * 13 11 10 43 43 H 1.07997 * 119.98963 * 0.03220 * 15 14 13 44 44 H 1.08003 * 119.91175 * 180.23260 * 16 15 14 45 45 H 1.08002 * 120.00722 * 180.02562 * 19 17 16 46 46 H 0.97008 * 120.00375 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 6 4.0644 2.8851 0.2511 7 1 3.6970 3.4716 -0.5909 8 6 5.5944 2.8961 0.2515 9 8 3.5837 3.4514 1.4719 10 7 1.6524 2.0974 -1.2518 11 6 0.4352 2.6643 -1.3670 12 8 -0.3416 2.6318 -0.4320 13 7 0.0787 3.2672 -2.5185 14 6 -1.2181 3.7758 -2.6709 15 6 -1.8819 4.3242 -1.5837 16 6 -3.1590 4.8298 -1.7364 17 6 -3.7841 4.7812 -2.9717 18 9 -5.0345 5.2727 -3.1142 19 6 -3.1307 4.2309 -4.0600 20 6 -1.8467 3.7258 -3.9149 21 8 -1.2036 3.1848 -4.9813 22 6 -1.8215 3.2699 -6.1764 23 1 -2.8191 3.6785 -6.2406 24 6 -1.1764 2.8327 -7.3229 25 7 0.0387 2.3343 -7.2447 26 14 -2.0329 2.9498 -8.9789 27 1 -3.3826 3.5420 -8.7972 28 1 -1.2343 3.8091 -9.8895 29 1 -2.1625 1.5922 -9.5664 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.0030 0.9836 -0.7596 36 1 3.8570 0.8802 1.0113 37 1 5.9617 2.3095 1.0936 38 1 5.9611 2.4641 -0.6796 39 1 5.9503 3.9224 0.3412 40 1 3.8723 2.9793 2.2650 41 1 2.2720 2.1231 -1.9978 42 1 0.7199 3.3490 -3.2418 43 1 -1.3990 4.3600 -0.6183 44 1 -3.6728 5.2599 -0.8893 45 1 -3.6200 4.1946 -5.0221 46 1 0.4900 2.0280 -8.0469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878936751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = -158.395245 kcal Electronic energy + Delta-G solvation = -30254.900984 eV Core-core repulsion = 25865.776792 eV Total energy + Delta-G solvation = -4389.124191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.82021 -41.79574 -40.58525 -39.08869 -38.06670 -36.71067 -35.46700 -34.30227 -33.18970 -32.57333 -31.06110 -30.03325 -29.11968 -27.37535 -25.13108 -24.22822 -23.40900 -22.27494 -22.14275 -21.53458 -20.13233 -19.72771 -19.18063 -18.30019 -17.31630 -17.15743 -16.99581 -16.81430 -16.66003 -16.53057 -16.15147 -15.95107 -15.49998 -15.26069 -15.23147 -15.11554 -14.89205 -14.58274 -14.36711 -14.00801 -13.72836 -13.43295 -13.39215 -13.32742 -13.02465 -12.97177 -12.57740 -12.49496 -12.42781 -12.30095 -12.12981 -11.94768 -11.81215 -11.62887 -11.58497 -11.18398 -10.89754 -10.82895 -10.82309 -9.94755 -9.52784 -8.71540 -8.50583 -6.16447 0.23739 0.48016 1.37219 1.42712 1.53031 1.69406 2.14022 2.16319 2.70673 3.06471 3.17707 3.25159 3.46628 3.47044 3.77080 3.93558 3.96529 4.14602 4.17372 4.29291 4.36718 4.38308 4.38719 4.58256 4.63652 4.68539 4.81375 4.89753 4.96402 5.02804 5.04316 5.07823 5.10200 5.22647 5.24220 5.26196 5.33609 5.34676 5.36414 5.48734 5.61447 5.69797 5.93724 5.98591 6.12251 6.94149 6.96370 7.02890 7.56586 7.66152 8.69968 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010042 B = 0.003379 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.564437 B = 8285.097860 C = 9883.318973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.166 3.834 4 H 0.075 0.925 5 C -0.148 4.148 6 C 0.099 3.901 7 H 0.077 0.923 8 C -0.179 4.179 9 O -0.583 6.583 10 N -0.725 5.725 11 C 0.703 3.297 12 O -0.601 6.601 13 N -0.670 5.670 14 C 0.083 3.917 15 C -0.051 4.051 16 C -0.204 4.204 17 C 0.120 3.880 18 F -0.145 7.145 19 C -0.264 4.264 20 C 0.130 3.870 21 O -0.202 6.202 22 C -0.416 4.416 23 H 0.098 0.902 24 C -0.008 4.008 25 N -0.904 5.904 26 Si 1.010 2.990 27 H -0.258 1.258 28 H -0.267 1.267 29 H -0.269 1.269 30 H 0.025 0.975 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.387 0.613 41 H 0.404 0.596 42 H 0.411 0.589 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.135 0.865 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.116 -2.302 13.540 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.062 3.938 4 H 0.093 0.907 5 C -0.186 4.186 6 C 0.040 3.960 7 H 0.095 0.905 8 C -0.237 4.237 9 O -0.391 6.391 10 N -0.381 5.381 11 C 0.404 3.596 12 O -0.481 6.481 13 N -0.317 5.317 14 C -0.013 4.013 15 C -0.072 4.072 16 C -0.223 4.223 17 C 0.100 3.900 18 F -0.124 7.124 19 C -0.285 4.285 20 C 0.076 3.924 21 O -0.107 6.107 22 C -0.492 4.492 23 H 0.115 0.885 24 C -0.207 4.207 25 N -0.541 5.541 26 Si 0.831 3.169 27 H -0.182 1.182 28 H -0.192 1.192 29 H -0.194 1.194 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.236 0.764 41 H 0.240 0.760 42 H 0.246 0.754 43 H 0.170 0.830 44 H 0.174 0.826 45 H 0.153 0.847 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.554 -2.156 13.838 16.953 hybrid contribution -0.043 -0.221 -1.527 1.544 sum 9.510 -2.378 12.311 15.737 Atomic orbital electron populations 1.21709 0.97056 0.99908 1.01091 1.21979 0.95125 0.96386 1.03261 1.20953 0.95362 0.92288 0.85197 0.90709 1.22591 0.92613 0.97821 1.05582 1.21911 0.93658 0.93359 0.87062 0.90453 1.22444 0.94879 1.02567 1.03770 1.86632 1.77263 1.58473 1.16686 1.45139 1.14703 1.60011 1.18216 1.15962 0.83174 0.78036 0.82385 1.90848 1.52371 1.65742 1.39134 1.42263 1.12041 1.59950 1.17484 1.16889 0.86935 1.05431 0.92007 1.20857 0.94172 0.94240 0.97931 1.20868 0.96701 1.08492 0.96283 1.17443 0.79937 0.98139 0.94487 1.91423 1.38685 1.85644 1.96651 1.20914 0.96714 1.10705 1.00187 1.19169 0.90791 0.93763 0.88656 1.83912 1.44616 1.67590 1.14582 1.21775 1.01159 1.44429 0.81796 0.88505 1.26345 0.96554 0.95393 1.02444 1.70120 1.13338 1.39575 1.31078 0.84632 0.78316 0.78694 0.75294 1.18153 1.19156 1.19434 0.95574 0.93271 0.93457 0.91577 0.88713 0.88879 0.87353 0.90661 0.90709 0.92764 0.76363 0.76014 0.75363 0.83044 0.82642 0.84719 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.51 71.99 0.61 -3.36 16 2 C -0.13 -2.63 5.61 30.60 0.17 -2.45 16 3 C 0.17 3.44 2.21 44.99 0.10 3.54 16 4 H 0.07 1.93 7.13 -2.39 -0.02 1.91 16 5 C -0.15 -1.84 4.43 30.60 0.14 -1.71 16 6 C 0.10 1.51 3.53 30.60 0.11 1.62 16 7 H 0.08 1.51 7.62 -2.39 -0.02 1.49 16 8 C -0.18 -1.97 9.53 71.98 0.69 -1.28 16 9 O -0.58 -10.77 12.79 -148.98 -1.91 -12.67 16 10 N -0.73 -18.50 4.40 -457.82 -2.02 -20.52 16 11 C 0.70 24.35 6.98 179.06 1.25 25.60 16 12 O -0.60 -23.43 10.89 -4.03 -0.04 -23.48 16 13 N -0.67 -25.43 5.20 -316.69 -1.65 -27.08 16 14 C 0.08 3.55 6.33 38.22 0.24 3.79 16 15 C -0.05 -1.98 8.69 22.37 0.19 -1.79 16 16 C -0.20 -7.36 10.02 22.33 0.22 -7.14 16 17 C 0.12 4.78 7.29 22.37 0.16 4.94 16 18 F -0.15 -5.46 17.26 44.97 0.78 -4.68 16 19 C -0.26 -11.90 9.14 22.42 0.20 -11.70 16 20 C 0.13 6.23 6.66 22.68 0.15 6.38 16 21 O -0.20 -11.03 9.32 -22.81 -0.21 -11.24 16 22 C -0.42 -22.76 9.49 67.91 0.64 -22.12 16 23 H 0.10 5.03 5.20 -2.92 -0.02 5.01 16 24 C -0.01 -0.41 5.49 84.83 0.47 0.06 16 25 N -0.90 -50.65 13.67 21.61 0.30 -50.35 16 26 Si 1.01 40.91 29.55 68.60 2.03 42.94 16 27 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 28 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 29 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 30 H 0.03 0.92 5.64 -2.39 -0.01 0.91 16 31 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.05 1.42 7.84 -2.39 -0.02 1.40 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.39 3.78 9.05 -74.06 -0.67 3.11 16 41 H 0.40 8.75 8.62 -92.71 -0.80 7.95 16 42 H 0.41 15.14 8.59 -92.71 -0.80 14.35 16 43 H 0.15 5.69 6.19 -2.91 -0.02 5.67 16 44 H 0.16 4.59 8.06 -2.91 -0.02 4.56 16 45 H 0.14 6.15 5.64 -2.91 -0.02 6.13 16 46 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 Total: -1.00 -69.39 381.36 1.42 -67.98 By element: Atomic # 1 Polarization: 45.94 SS G_CDS: -1.21 Total: 44.73 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.35 Total: -5.62 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -3.37 Total: -97.95 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -2.16 Total: -47.39 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.78 Total: -4.68 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -69.39 1.42 -67.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878936751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.420 kcal (2) G-P(sol) polarization free energy of solvation -69.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds